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Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 64.7 |
| Seed ortholog evalue | 1.7e-07 |
| Seed eggNOG ortholog | 2880.D8LKX6 |
| Preferred name | USP48 |
| KEGG ko | ko:K02911,ko:K06255,ko:K11858 |
| KEGG Pathway | ko03010,ko04512,ko05161,ko05205,map03010,map04512,map05161,map05205 |
| KEGG Module | M00178 |
| Hectar predicted targeting category | other localisation |
| GOs | GO:0000003,GO:0003006,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005739,GO:0005829,GO:0005886,GO:0007275,GO:0008150,GO:0009791,GO:0010154,GO:0016020,GO:0022414,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044444,GO:0044446,GO:0044456,GO:0044459,GO:0044464,GO:0045121,GO:0045202,GO:0045211,GO:0048316,GO:0048608,GO:0048731,GO:0048856,GO:0061458,GO:0070013,GO:0071944,GO:0097060,GO:0098589,GO:0098590,GO:0098794,GO:0098805,GO:0098857 |
| EggNOG free text desc. | ubiquitinyl hydrolase activity |
| EggNOG OGs | COG5077@1,KOG1863@2759 |
| EC | 3.4.19.12 |
| COG Functional cat. | O |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | br01610,ko00000,ko00001,ko00002,ko00535,ko01000,ko01002,ko03011,ko03029,ko04121,ko04147,ko04516 |
| Exons | 3 |
| Model size | 2636 |
| Cds size | 1848 |
| Stop | 0 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig3318.8900.1 >prot_H-paniculata_contig3318.8900.1 ID=prot_H-paniculata_contig3318.8900.1|Name=mRNA_H-paniculata_contig3318.8900.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=616bp
MVMGDLVKAAMDLAVPETSFAAAAGAIRGENENNAGGVSAAAAASNGNEG GRTWLNNSMDDDSSASDGEDAAQAAMHLTTLNRAPAAAALAAMEEDETFS SHHTRARLSHTPGRRNDESYHQESDEDRADSPPSRSISIGQGADQGDGLF TPPARHCDACKVGPKRTTVCCRKCYGEYHPGCVGFNPAGRLYPPPQWICP HCDGGTRGMGKLHAYFQGKGTQVHGDQPWCPICFKDNRRELSKAEAKGGR KWRACPGAAHCPGCNLITHPACVARLPRNSDGTWPCPECKLRQINRSIHS TVRRGGCCGASPGSPGGAAESLSGTGGGGGGGNDPVEGAESRVSRVDEVQ ITPPKKVEMGEPSKRESLSPQTLSPNTLLGTGVVGGGGGGGAGLGSAKSR SISTPPPSFKKRLAAKARAGAISVSENTAIGSVGSAIMTDVGKSGSDART TMVTANSNDSVPIVQQQHFVPLVEPKRGRGRPTLQASAAYRAYLESLRMS PTPRGTMGKAVGNRLPARVVHPDQGEAPTKRGRGRPRRDSYPLDPPPISS TKSSARARLSSGGGGGGGGGSTASRPSYSSFGNASSAKVAGLLAAASVIT SSGRIPHRKGAAAAAA back to topmRNA from alignment at H-paniculata_contig3318:11728..15475+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig3318.8900.1 ID=mRNA_H-paniculata_contig3318.8900.1|Name=mRNA_H-paniculata_contig3318.8900.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3748bp|location=Sequence derived from alignment at H-paniculata_contig3318:11728..15475+ (Halopteris paniculata Hal_grac_a_UBK monoicous) GTCGGGAGGTCGCGTGCGACCTCATCTGTGTTGTTAAAGCACCCTTCCCT
CTTTTTCCTGTACATTACCTGTTTATGGCACAGAACGGCGCACCTGTACC
TTTTCGTTTCCTTCGCCTCCTCATTTATCCAATAAAAGATTCGAATTTCC
CAACCCCCTATGGAAACCCAGCGCATGTTGTCTTTCTAAAATAAATAGAC
AAATATTTGCTAACGTACACGTTGATGAGCTAGCACAGGCTAAACCGAAC
AAACGAAATGCAGACAGGCATACCGTAGCAACATTCCATCACTCAGAAAA
ACCACGGCAAGCTGTGTGGTACGGTGCTTTCTTCTAGGCTTCCGGTTTCT
TCCTTGCGAGCGGGCTTCTGGTGTTGTTTGGCAGCGATTCACCCACGGCA
AAAGCAAGACAGACGTTCGTTCGGTCGCACGGTGATTTTGAAGAGGCTAG
GACATCTTACAAGCCGAAGGCTGAGAAGACTAACGGAGGCCAGCCGGTAC
ATCAAATCAAATCAACTTGTGGAAGGAGCTGCGTGAAAGTCTGGCTTGCG
AACCGATGATGCTCGGATGATCTTGACTGCCTAGTTCGCGCGAGTCCCGC
ACGACTTACCCAAGGTGTGGCCAGCGCTACCTGCTACGGTTATACTAGTC
TGTCTGCAGCTCATCTATATACTTTCTGTGCTAGGTGGTCTGCACGTGGA
CGGGAGCAAAACTTGACTTTTTCTGTGATCAACAAAAAGCCTCTACAGAC
AGCGAACTGAACTACTGACTGTACTGTACTGTGCAGCCACTGCAACTGAC
TCTCTCCTGTCTACTGTCTGCACTTGCTTTCACTGAACAAACAGGTCGGG
TGCGCCCATTACTGCACGAGGGGTGCTGTTTCAGCAGAGGACTAGGTGGT
GCAAGCGTGGACCATACTCACTCCAGCAAACAATCCAGGCTTGGCGTGCC
GTGCTCTAGATCAGGACCCGATAAGCTGTGAGGTGTGTGTGGGTTCGTGT
CTGGACAACCCGTTTGTTCGTGATAATCGATGATTTTCAAGGTCCAAAGA
CATTGGAAATGTACACGAAGTAAGGTCAAGTCTGACCTCTAGTATGTGCG
CGAGGGTTTTGGAATGAGCGGCCCTCAGCGCGTTACTCCTACAGGCTCTA
GCAGAGAAGGTAGGGCCGGGGAATGACTCAAGAACGTGCCAGCTTGATCG
GTCAATCGCGAGTTACTCAATCTGCTTCTCGAGTGTAATGAGAGTGGATG
ACGGGTATTTGACTTTTTTTCGCACTACTATTTTGACTTTTTAGGTGTTG
GATATAAATACATAGAAGACGTCGGTACAGTAATACAGTAAAAATAAATA
CTGTAAGTACAGACAGTACAGTGAATATATATTTTCACAACAGTCAGAAG
TATTGAGACAAAATAGAGAAGTTGGACAGGCGTTGTATCGAATATACATC
CGGTACGTGAAGTAGAAGGGTGTAATCATTGCTGCACAGTTATGCTCTCA
TGCGGCAGGCAGCACACCACCGCGTAGCACATGAAGAAAGTTGTACTCTT
TTTCTCGAGGAGTCTGTACACGCAGACAGTTGCCGACCACAGGAACTCAA
AGAGTTTTACGTGTAGCCTGGTGCGCTGCTGTGAACAGAAGTCCGAAGAC
AGAGCAGCTGTCCCGTTGCGGGCTGGTTGCGAGATTTAAAAATGTTCAGA
GATCTACAGTAATATTGTACCGCTGGCTCTCCACTTATTGCACATACATA
ATCATAATGTCCGAACGGAAAGTGTCATTGAAATATACAAATATACGATC
ATGACGCGTGGACGGAAATTACTCCATTTAACCACCCTGCTCTTCTGTAT
ACATACATACCGTAGGACGGAGAAGTAGCCTAGAGCTCCGCCTCAACATT
ATGGTTATGGGAGATCTGGTGAAGGCTGCGATGGACCTAGCAGTCCCGGA
AACAAGTTTTGCAGCAGCGGCGGGGGCTATTCGAGGAGAGAACGAAAACA
ACGCCGGCGGGGTATCGGCGGCTGCCGCGGCGAGCAATGGGAATGAAGGA
GGAAGAACGTGGCTGAACAACAGTATGGATGATGACAGTAGCGCCAGCGA
TGGTGAGGATGCGGCGCAAGCGGCGATGCATTTGACCACACTGAACAGGG
CGCCGGCGGCGGCGGCGTTGGCTGCCATGGAGGAGGACGAAACGTTCAGC
AGTCACCACACACGGGCACGTTTATCACACACCCCAGGGCGCCGAAACGA
TGAAAGCTACCACCAAGAGAGCGATGAAGACAGAGCAGACTCGCCGCCCA
GCAGGTCGATCTCGATCGGGCAGGGTGCAGATCAGGGGGACGGGCTTTTC
ACTCCCCCCGCACGGCACTGCGACGCGTGTAAGGTGGGCCCGAAGCGCAC
CACTGTTTGCTGTCGGAAGTGCTACGGTGAATACCACCCGGGCTGCGTCG
GGTTTAACCCTGCGGGAAGGTTGTACCCTCCCCCACAGTGGATATGTCCC
CATTGCGATGGCGGTACGCGGGGCATGGGCAAGCTCCACGCCTACTTCCA
GGGCAAGGGTACCCAAGTACACGGTGACCAGCCGTGGTGTCCCATTTGCT
TCAAGGACAATCGGAGGGAGCTCAGCAAGGCTGAGGCCAAGGGAGGTCGC
AAGTGGCGTGCGTGCCCCGGCGCGGCCCACTGCCCCGGCTGCAATCTCAT
CACGCACCCGGCCTGTGTGGCCCGCCTTCCGCGCAATTCCGACGGGACAT
GGCCATGTCCAGAGTGCAAGCTTCGACAGATAAACAGAAGCATTCACAGT
ACTGTGCGCCGCGGTGGCTGCTGTGGCGCCAGTCCTGGGAGTCCCGGCGG
GGCAGCAGAGAGCCTCAGCGGCACGGGCGGCGGCGGCGGCGGCGGCAATG
ATCCTGTTGAGGGAGCAGAGAGCCGCGTCAGCAGAGTGGATGAGGTTCAG
ATCACCCCACCGAAAAAGGTGGAGATGGGGGAGCCCTCAAAGAGGGAGTC
TTTGTCTCCGCAAACCCTTTCACCAAATACACTACTCGGGACAGGGGTGG
TTGGAGGCGGAGGCGGAGGGGGGGCAGGTCTGGGTTCCGCGAAATCGAGG
AGTATTAGTACACCGCCGCCGTCCTTCAAGAAGCGTCTTGCAGCCAAGGC
GAGAGCTGGAGCCATCAGCGTTTCGGAGAATACTGCTATCGGTAGCGTCG
GATCTGCGATAATGACCGACGTCGGCAAAAGCGGAAGCGATGCCAGGACT
ACCATGGTTACCGCCAATAGCAACGATAGCGTTCCAATTGTGCAGCAACA
GCACTTTGTTCCACTTGTGGAACCTAAAAGAGGGCGCGGGCGACCTACCC
TACAGGCAAGTGCCGCGTACCGAGCGTACCTCGAGAGCTTGCGGATGTCT
CCGACGCCGCGGGGCACCATGGGGAAGGCGGTGGGTAACAGGCTTCCGGC
GCGAGTGGTGCACCCAGATCAGGGCGAAGCGCCGACCAAGCGGGGTCGCG
GGCGCCCCCGCCGCGACTCCTATCCTCTGGATCCTCCCCCAATTTCCAGT
ACGAAGAGCAGTGCACGCGCTCGGCTGAGCTCCGGCGGCGGTGGTGGCGG
AGGAGGAGGCAGCACCGCATCTCGTCCGTCGTATTCCTCATTCGGCAACG
CGAGCAGCGCCAAGGTTGCCGGGTTATTGGCGGCCGCAAGCGTGATAACT
AGCAGCGGGAGGATTCCTCATCGAAAGGGCGCGGCCGCCGCCGCCGCC back to topCoding sequence (CDS) from alignment at H-paniculata_contig3318:11728..15475+ >mRNA_H-paniculata_contig3318.8900.1 ID=mRNA_H-paniculata_contig3318.8900.1|Name=mRNA_H-paniculata_contig3318.8900.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3696bp|location=Sequence derived from alignment at H-paniculata_contig3318:11728..15475+ (Halopteris paniculata Hal_grac_a_UBK monoicous) ATGGTTATGGGAGATCTGGTGAAGGCTGCGATGGACCTAGCAGTCCCGGA AACAAGTTTTGCAGCAGCGGCGGGGGCTATTCGAGGAGAGAACGAAAACA ACGCCGGCGGGGTATCGGCGGCTGCCGCGGCGAGCAATGGGAATGAAGGA GGAAGAACGTGGCTGAACAACAGTATGGATGATGACAGTAGCGCCAGCGA TGGTGAGGATGCGGCGCAAGCGGCGATGCATTTGACCACACTGAACAGGG CGCCGGCGGCGGCGGCGTTGGCTGCCATGGAGGAGGACGAAACGTTCAGC AGTCACCACACACGGGCACGTTTATCACACACCCCAGGGCGCCGAAACGA TGAAAGCTACCACCAAGAGAGCGATGAAGACAGAGCAGACTCGCCGCCCA GCAGGTCGATCTCGATCGGGCAGGGTGCAGATCAGGGGGACGGGCTTTTC ACTCCCCCCGCACGGCACTGCGACGCGTGTAAGGTGGGCCCGAAGCGCAC CACTGTTTGCTGTCGGAAGTGCTACGGTGAATACCACCCGGGCTGCGTCG GGTTTAACCCTGCGGGAAGGTTGTACCCTCCCCCACAGTGGATATGTCCC CATTGCGATGGCGGTACGCGGGGCATGGGCAAGCTCCACGCCTACTTCCA GGGCAAGGGTACCCAAGTACACGGTGACCAGCCGTGGTGTCCCATTTGCT TCAAGGACAATCGGAGGGAGCTCAGCAAGGCTGAGGCCAAGGGAGGTCGC AAGTGGCGTGCGTGCCCCGGCGCGGCCCACTGCCCCGGCTGCAATCTCAT CACGCACCCGGCCTGTGTGGCCCGCCTTCCGCGCAATTCCGACGGGACAT GGCCATGTCCAGAGTGCAAGCTTCGACAGATAAACAGAAGCATTCACAGT ACTGTGCGCCGCGGTGGCTGCTGTGGCGCCAGTCCTGGGAGTCCCGGCGG GGCAGCAGAGAGCCTCAGCGGCACGGGCGGCGGCGGCGGCGGCGGCAATG ATCCTGTTGAGGGAGCAGAGAGCCGCGTCAGCAGAGTGGATGAGGTTCAG ATCACCCCACCGAAAAAGGTGGAGATGGGGGAGCCCTCAAAGAGGGAGTC TTTGTCTCCGCAAACCCTTTCACCAAATACACTACTCGGGACAGGGGTGG TTGGAGGCGGAGGCGGAGGGGGGGCAGGTCTGGGTTCCGCGAAATCGAGG AGTATTAGTACACCGCCGCCGTCCTTCAAGAAGCGTCTTGCAGCCAAGGC GAGAGCTGGAGCCATCAGCGTTTCGGAGAATACTGCTATCGGTAGCGTCG GATCTGCGATAATGACCGACGTCGGCAAAAGCGGAAGCGATGCCAGGACT ACCATGGTTACCGCCAATAGCAACGATAGCGTTCCAATTGTGCAGCAACA GCACTTTGTTCCACTTGTGGAACCTAAAAGAGGGCGCGGGCGACCTACCC TACAGGCAAGTGCCGCGTACCGAGCGTACCTCGAGAGCTTGCGGATGTCT CCGACGCCGCGGGGCACCATGGGGAAGGCGGTGGGTAACAGGCTTCCGGC GCGAGTGGTGCACCCAGATCAGGGCGAAGCGCCGACCAAGCGGGGTCGCG GGCGCCCCCGCCGCGACTCCTATCCTCTGGATCCTCCCCCAATTTCCAGT ACGAAGAGCAGTGCACGCGCTCGGCTGAGCTCCGGCGGCGGTGGTGGCGG AGGAGGAGGCAGCACCGCATCTCGTCCGTCGTATTCCTCATTCGGCAACG CGAGCAGCGCCAAGGTTGCCGGGTTATTGGCGGCCGCAAGCGTGATAACT AGCAGCGGGAGGATTCCTCATCGAAAGGGCGCGGCCGCCGCCGCCGCCAT GGTTATGGGAGATCTGGTGAAGGCTGCGATGGACCTAGCAGTCCCGGAAA CAAGTTTTGCAGCAGCGGCGGGGGCTATTCGAGGAGAGAACGAAAACAAC GCCGGCGGGGTATCGGCGGCTGCCGCGGCGAGCAATGGGAATGAAGGAGG AAGAACGTGGCTGAACAACAGTATGGATGATGACAGTAGCGCCAGCGATG GTGAGGATGCGGCGCAAGCGGCGATGCATTTGACCACACTGAACAGGGCG CCGGCGGCGGCGGCGTTGGCTGCCATGGAGGAGGACGAAACGTTCAGCAG TCACCACACACGGGCACGTTTATCACACACCCCAGGGCGCCGAAACGATG AAAGCTACCACCAAGAGAGCGATGAAGACAGAGCAGACTCGCCGCCCAGC AGGTCGATCTCGATCGGGCAGGGTGCAGATCAGGGGGACGGGCTTTTCAC TCCCCCCGCACGGCACTGCGACGCGTGTAAGGTGGGCCCGAAGCGCACCA CTGTTTGCTGTCGGAAGTGCTACGGTGAATACCACCCGGGCTGCGTCGGG TTTAACCCTGCGGGAAGGTTGTACCCTCCCCCACAGTGGATATGTCCCCA TTGCGATGGCGGTACGCGGGGCATGGGCAAGCTCCACGCCTACTTCCAGG GCAAGGGTACCCAAGTACACGGTGACCAGCCGTGGTGTCCCATTTGCTTC AAGGACAATCGGAGGGAGCTCAGCAAGGCTGAGGCCAAGGGAGGTCGCAA GTGGCGTGCGTGCCCCGGCGCGGCCCACTGCCCCGGCTGCAATCTCATCA CGCACCCGGCCTGTGTGGCCCGCCTTCCGCGCAATTCCGACGGGACATGG CCATGTCCAGAGTGCAAGCTTCGACAGATAAACAGAAGCATTCACAGTAC TGTGCGCCGCGGTGGCTGCTGTGGCGCCAGTCCTGGGAGTCCCGGCGGGG CAGCAGAGAGCCTCAGCGGCACGGGCGGCGGCGGCGGCGGCGGCAATGAT CCTGTTGAGGGAGCAGAGAGCCGCGTCAGCAGAGTGGATGAGGTTCAGAT CACCCCACCGAAAAAGGTGGAGATGGGGGAGCCCTCAAAGAGGGAGTCTT TGTCTCCGCAAACCCTTTCACCAAATACACTACTCGGGACAGGGGTGGTT GGAGGCGGAGGCGGAGGGGGGGCAGGTCTGGGTTCCGCGAAATCGAGGAG TATTAGTACACCGCCGCCGTCCTTCAAGAAGCGTCTTGCAGCCAAGGCGA GAGCTGGAGCCATCAGCGTTTCGGAGAATACTGCTATCGGTAGCGTCGGA TCTGCGATAATGACCGACGTCGGCAAAAGCGGAAGCGATGCCAGGACTAC CATGGTTACCGCCAATAGCAACGATAGCGTTCCAATTGTGCAGCAACAGC ACTTTGTTCCACTTGTGGAACCTAAAAGAGGGCGCGGGCGACCTACCCTA CAGGCAAGTGCCGCGTACCGAGCGTACCTCGAGAGCTTGCGGATGTCTCC GACGCCGCGGGGCACCATGGGGAAGGCGGTGGGTAACAGGCTTCCGGCGC GAGTGGTGCACCCAGATCAGGGCGAAGCGCCGACCAAGCGGGGTCGCGGG CGCCCCCGCCGCGACTCCTATCCTCTGGATCCTCCCCCAATTTCCAGTAC GAAGAGCAGTGCACGCGCTCGGCTGAGCTCCGGCGGCGGTGGTGGCGGAG GAGGAGGCAGCACCGCATCTCGTCCGTCGTATTCCTCATTCGGCAACGCG AGCAGCGCCAAGGTTGCCGGGTTATTGGCGGCCGCAAGCGTGATAACTAG CAGCGGGAGGATTCCTCATCGAAAGGGCGCGGCCGCCGCCGCCGCC back to top
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