prot_H-paniculata_contig33024.8862.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig33024.8862.1
Unique Nameprot_H-paniculata_contig33024.8862.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length44
Homology
BLAST of mRNA_H-paniculata_contig33024.8862.1 vs. uniprot
Match: A0A6H5JEX6_9PHAE (PseudoU_synth_1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEX6_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 4.260e-17
Identity = 35/41 (85.37%), Postives = 41/41 (100.00%), Query Frame = 0
Query:    3 FQVCGQAFLWHMVRCLMSVLFMVGRGLESPEIMSFLLDLDR 43
            F+VCGQAFLWHMVRCLM+VLFMVGRGLESP++MSFLLD++R
Sbjct:  500 FEVCGQAFLWHMVRCLMAVLFMVGRGLESPDVMSFLLDMER 540          
BLAST of mRNA_H-paniculata_contig33024.8862.1 vs. uniprot
Match: A0A2I0JP50_PUNGR (PseudoU_synth_1 domain-containing protein n=1 Tax=Punica granatum TaxID=22663 RepID=A0A2I0JP50_PUNGR)

HSP 1 Score: 66.2 bits (160), Expect = 1.370e-11
Identity = 28/40 (70.00%), Postives = 35/40 (87.50%), Query Frame = 0
Query:    4 QVCGQAFLWHMVRCLMSVLFMVGRGLESPEIMSFLLDLDR 43
            +V G AFLWH VRC+++VLFMVG+GLESP+I+ FLLD DR
Sbjct:  204 KVTGSAFLWHQVRCMVAVLFMVGQGLESPQILEFLLDTDR 243          
BLAST of mRNA_H-paniculata_contig33024.8862.1 vs. uniprot
Match: A0A218XIH9_PUNGR (PseudoU_synth_1 domain-containing protein n=6 Tax=Punica granatum TaxID=22663 RepID=A0A218XIH9_PUNGR)

HSP 1 Score: 66.2 bits (160), Expect = 1.540e-11
Identity = 28/40 (70.00%), Postives = 35/40 (87.50%), Query Frame = 0
Query:    4 QVCGQAFLWHMVRCLMSVLFMVGRGLESPEIMSFLLDLDR 43
            +V G AFLWH VRC+++VLFMVG+GLESP+I+ FLLD DR
Sbjct:  333 KVTGSAFLWHQVRCMVAVLFMVGQGLESPQILEFLLDTDR 372          
BLAST of mRNA_H-paniculata_contig33024.8862.1 vs. uniprot
Match: A0A7S1VPD3_9STRA (tRNA pseudouridine synthase (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VPD3_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 5.450e-11
Identity = 25/40 (62.50%), Postives = 34/40 (85.00%), Query Frame = 0
Query:    2 FFQVCGQAFLWHMVRCLMSVLFMVGRGLESPEIMSFLLDL 41
            +FQ+ GQAFLWH +RC++SVLF+VGRGLE P ++  LLD+
Sbjct:  120 YFQIVGQAFLWHQIRCIVSVLFLVGRGLEEPSVVDELLDV 159          
BLAST of mRNA_H-paniculata_contig33024.8862.1 vs. uniprot
Match: A7SJV8_NEMVE (Predicted protein n=1 Tax=Nematostella vectensis TaxID=45351 RepID=A7SJV8_NEMVE)

HSP 1 Score: 64.3 bits (155), Expect = 7.310e-11
Identity = 24/39 (61.54%), Postives = 34/39 (87.18%), Query Frame = 0
Query:    5 VCGQAFLWHMVRCLMSVLFMVGRGLESPEIMSFLLDLDR 43
            +CG AFLWH VRC+MS+L MVG+GLE PE++ +LLD+++
Sbjct:  295 ICGSAFLWHQVRCMMSILLMVGQGLEQPEVIDWLLDIEK 333          
BLAST of mRNA_H-paniculata_contig33024.8862.1 vs. uniprot
Match: A0A2R5GGG2_9STRA (tRNA pseudouridine synthase n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GGG2_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 1.000e-10
Identity = 25/42 (59.52%), Postives = 37/42 (88.10%), Query Frame = 0
Query:    2 FFQVCGQAFLWHMVRCLMSVLFMVGRGLESPEIMSFLLDLDR 43
            + +VCG AFLWH +RCL+SVLF+VG+ LESP+++S LLD+++
Sbjct:  378 YLKVCGSAFLWHQIRCLVSVLFLVGQRLESPDVISALLDIEK 419          
BLAST of mRNA_H-paniculata_contig33024.8862.1 vs. uniprot
Match: A0A024TF41_9STRA (tRNA pseudouridine synthase n=3 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TF41_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 1.000e-10
Identity = 27/41 (65.85%), Postives = 36/41 (87.80%), Query Frame = 0
Query:    2 FFQVCGQAFLWHMVRCLMSVLFMVGRGLESPEIMSFLLDLD 42
            +FQV G+AFLWH VRC+ ++LF+VG+G ESPEI+S LLD+D
Sbjct:  304 YFQVHGRAFLWHQVRCMAAILFLVGKGHESPEIVSTLLDID 344          
BLAST of mRNA_H-paniculata_contig33024.8862.1 vs. uniprot
Match: A0A059BT35_EUCGR (PseudoU_synth_1 domain-containing protein n=3 Tax=Eucalyptus grandis TaxID=71139 RepID=A0A059BT35_EUCGR)

HSP 1 Score: 62.8 bits (151), Expect = 2.550e-10
Identity = 25/41 (60.98%), Postives = 35/41 (85.37%), Query Frame = 0
Query:    2 FFQVCGQAFLWHMVRCLMSVLFMVGRGLESPEIMSFLLDLD 42
            +F++ G AFLWH VRC+++V+FMVG+GLESP++M  LLD D
Sbjct:  289 YFKIKGSAFLWHQVRCMVAVMFMVGQGLESPDVMDALLDTD 329          
BLAST of mRNA_H-paniculata_contig33024.8862.1 vs. uniprot
Match: A0A7S2UF07_9STRA (tRNA pseudouridine synthase (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UF07_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 4.110e-10
Identity = 24/42 (57.14%), Postives = 36/42 (85.71%), Query Frame = 0
Query:    2 FFQVCGQAFLWHMVRCLMSVLFMVGRGLESPEIMSFLLDLDR 43
            +F++ GQAFLWH +RC+++VLFMVG  LESP ++S LLD+++
Sbjct:   20 YFEIVGQAFLWHQIRCIVAVLFMVGEELESPRVISDLLDINK 61          
BLAST of mRNA_H-paniculata_contig33024.8862.1 vs. uniprot
Match: A0A7S3LCH6_9STRA (tRNA pseudouridine synthase (Fragment) n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3LCH6_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 4.150e-10
Identity = 22/40 (55.00%), Postives = 34/40 (85.00%), Query Frame = 0
Query:    4 QVCGQAFLWHMVRCLMSVLFMVGRGLESPEIMSFLLDLDR 43
            Q+ GQAFLWH +RC++S+LFM+G+GLE P+++  LLD+ +
Sbjct:   66 QIVGQAFLWHQIRCIVSILFMIGKGLEEPQVVEELLDVQK 105          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig33024.8862.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JEX6_9PHAE4.260e-1785.37PseudoU_synth_1 domain-containing protein n=1 Tax=... [more]
A0A2I0JP50_PUNGR1.370e-1170.00PseudoU_synth_1 domain-containing protein n=1 Tax=... [more]
A0A218XIH9_PUNGR1.540e-1170.00PseudoU_synth_1 domain-containing protein n=6 Tax=... [more]
A0A7S1VPD3_9STRA5.450e-1162.50tRNA pseudouridine synthase (Fragment) n=1 Tax=Gra... [more]
A7SJV8_NEMVE7.310e-1161.54Predicted protein n=1 Tax=Nematostella vectensis T... [more]
A0A2R5GGG2_9STRA1.000e-1059.52tRNA pseudouridine synthase n=1 Tax=Hondaea fermen... [more]
A0A024TF41_9STRA1.000e-1065.85tRNA pseudouridine synthase n=3 Tax=Aphanomyces in... [more]
A0A059BT35_EUCGR2.550e-1060.98PseudoU_synth_1 domain-containing protein n=3 Tax=... [more]
A0A7S2UF07_9STRA4.110e-1057.14tRNA pseudouridine synthase (Fragment) n=1 Tax=Att... [more]
A0A7S3LCH6_9STRA4.150e-1055.00tRNA pseudouridine synthase (Fragment) n=1 Tax=Amp... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR020097Pseudouridine synthase I, TruA, alpha/beta domainPFAMPF01416PseudoU_synth_1coord: 3..40
e-value: 5.0E-12
score: 46.2
IPR020095Pseudouridine synthase I, TruA, C-terminalGENE3D3.30.70.660coord: 1..43
e-value: 6.1E-8
score: 34.4
IPR001406Pseudouridine synthase I, TruAPANTHERPTHR11142PSEUDOURIDYLATE SYNTHASEcoord: 2..42
NoneNo IPR availablePANTHERPTHR11142:SF5TRNA PSEUDOURIDINE(38/39) SYNTHASEcoord: 2..42
IPR020103Pseudouridine synthase, catalytic domain superfamilySUPERFAMILY55120Pseudouridine synthasecoord: 2..41

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig33024contigH-paniculata_contig33024:154..285 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig33024.8862.1mRNA_H-paniculata_contig33024.8862.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig33024 154..285 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig33024.8862.1 ID=prot_H-paniculata_contig33024.8862.1|Name=mRNA_H-paniculata_contig33024.8862.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=44bp
VFFQVCGQAFLWHMVRCLMSVLFMVGRGLESPEIMSFLLDLDR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR020097PsdUridine_synth_TruA_a/b_dom
IPR020095PsdUridine_synth_TruA_C
IPR001406PsdUridine_synth_TruA
IPR020103PsdUridine_synth_cat_dom_sf