mRNA_H-paniculata_contig33024.8862.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig33024.8862.1
Unique NamemRNA_H-paniculata_contig33024.8862.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig33024.8862.1 vs. uniprot
Match: A0A6H5JEX6_9PHAE (PseudoU_synth_1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEX6_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 4.260e-17
Identity = 35/41 (85.37%), Postives = 41/41 (100.00%), Query Frame = 1 
Query:    7 FQVCGQAFLWHMVRCLMSVLFMVGRGLESPEIMSFLLDLDR 129
            F+VCGQAFLWHMVRCLM+VLFMVGRGLESP++MSFLLD++R
Sbjct:  500 FEVCGQAFLWHMVRCLMAVLFMVGRGLESPDVMSFLLDMER 540
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BLAST of mRNA_H-paniculata_contig33024.8862.1 vs. uniprot
Match: A0A2I0JP50_PUNGR (PseudoU_synth_1 domain-containing protein n=1 Tax=Punica granatum TaxID=22663 RepID=A0A2I0JP50_PUNGR)

HSP 1 Score: 66.2 bits (160), Expect = 1.370e-11
Identity = 28/40 (70.00%), Postives = 35/40 (87.50%), Query Frame = 1 
Query:   10 QVCGQAFLWHMVRCLMSVLFMVGRGLESPEIMSFLLDLDR 129
            +V G AFLWH VRC+++VLFMVG+GLESP+I+ FLLD DR
Sbjct:  204 KVTGSAFLWHQVRCMVAVLFMVGQGLESPQILEFLLDTDR 243
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BLAST of mRNA_H-paniculata_contig33024.8862.1 vs. uniprot
Match: A0A218XIH9_PUNGR (PseudoU_synth_1 domain-containing protein n=6 Tax=Punica granatum TaxID=22663 RepID=A0A218XIH9_PUNGR)

HSP 1 Score: 66.2 bits (160), Expect = 1.540e-11
Identity = 28/40 (70.00%), Postives = 35/40 (87.50%), Query Frame = 1 
Query:   10 QVCGQAFLWHMVRCLMSVLFMVGRGLESPEIMSFLLDLDR 129
            +V G AFLWH VRC+++VLFMVG+GLESP+I+ FLLD DR
Sbjct:  333 KVTGSAFLWHQVRCMVAVLFMVGQGLESPQILEFLLDTDR 372
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BLAST of mRNA_H-paniculata_contig33024.8862.1 vs. uniprot
Match: A0A7S1VPD3_9STRA (tRNA pseudouridine synthase (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VPD3_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 5.450e-11
Identity = 25/40 (62.50%), Postives = 34/40 (85.00%), Query Frame = 1 
Query:    4 FFQVCGQAFLWHMVRCLMSVLFMVGRGLESPEIMSFLLDL 123
            +FQ+ GQAFLWH +RC++SVLF+VGRGLE P ++  LLD+
Sbjct:  120 YFQIVGQAFLWHQIRCIVSVLFLVGRGLEEPSVVDELLDV 159
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BLAST of mRNA_H-paniculata_contig33024.8862.1 vs. uniprot
Match: A7SJV8_NEMVE (Predicted protein n=1 Tax=Nematostella vectensis TaxID=45351 RepID=A7SJV8_NEMVE)

HSP 1 Score: 64.3 bits (155), Expect = 7.310e-11
Identity = 24/39 (61.54%), Postives = 34/39 (87.18%), Query Frame = 1 
Query:   13 VCGQAFLWHMVRCLMSVLFMVGRGLESPEIMSFLLDLDR 129
            +CG AFLWH VRC+MS+L MVG+GLE PE++ +LLD+++
Sbjct:  295 ICGSAFLWHQVRCMMSILLMVGQGLEQPEVIDWLLDIEK 333
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BLAST of mRNA_H-paniculata_contig33024.8862.1 vs. uniprot
Match: A0A2R5GGG2_9STRA (tRNA pseudouridine synthase n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GGG2_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 1.000e-10
Identity = 25/42 (59.52%), Postives = 37/42 (88.10%), Query Frame = 1 
Query:    4 FFQVCGQAFLWHMVRCLMSVLFMVGRGLESPEIMSFLLDLDR 129
            + +VCG AFLWH +RCL+SVLF+VG+ LESP+++S LLD+++
Sbjct:  378 YLKVCGSAFLWHQIRCLVSVLFLVGQRLESPDVISALLDIEK 419
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BLAST of mRNA_H-paniculata_contig33024.8862.1 vs. uniprot
Match: A0A024TF41_9STRA (tRNA pseudouridine synthase n=3 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TF41_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 1.000e-10
Identity = 27/41 (65.85%), Postives = 36/41 (87.80%), Query Frame = 1 
Query:    4 FFQVCGQAFLWHMVRCLMSVLFMVGRGLESPEIMSFLLDLD 126
            +FQV G+AFLWH VRC+ ++LF+VG+G ESPEI+S LLD+D
Sbjct:  304 YFQVHGRAFLWHQVRCMAAILFLVGKGHESPEIVSTLLDID 344
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BLAST of mRNA_H-paniculata_contig33024.8862.1 vs. uniprot
Match: A0A059BT35_EUCGR (PseudoU_synth_1 domain-containing protein n=3 Tax=Eucalyptus grandis TaxID=71139 RepID=A0A059BT35_EUCGR)

HSP 1 Score: 62.8 bits (151), Expect = 2.550e-10
Identity = 25/41 (60.98%), Postives = 35/41 (85.37%), Query Frame = 1 
Query:    4 FFQVCGQAFLWHMVRCLMSVLFMVGRGLESPEIMSFLLDLD 126
            +F++ G AFLWH VRC+++V+FMVG+GLESP++M  LLD D
Sbjct:  289 YFKIKGSAFLWHQVRCMVAVMFMVGQGLESPDVMDALLDTD 329
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BLAST of mRNA_H-paniculata_contig33024.8862.1 vs. uniprot
Match: A0A7S2UF07_9STRA (tRNA pseudouridine synthase (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UF07_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 4.110e-10
Identity = 24/42 (57.14%), Postives = 36/42 (85.71%), Query Frame = 1 
Query:    4 FFQVCGQAFLWHMVRCLMSVLFMVGRGLESPEIMSFLLDLDR 129
            +F++ GQAFLWH +RC+++VLFMVG  LESP ++S LLD+++
Sbjct:   20 YFEIVGQAFLWHQIRCIVAVLFMVGEELESPRVISDLLDINK 61
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BLAST of mRNA_H-paniculata_contig33024.8862.1 vs. uniprot
Match: A0A7S3LCH6_9STRA (tRNA pseudouridine synthase (Fragment) n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3LCH6_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 4.150e-10
Identity = 22/40 (55.00%), Postives = 34/40 (85.00%), Query Frame = 1 
Query:   10 QVCGQAFLWHMVRCLMSVLFMVGRGLESPEIMSFLLDLDR 129
            Q+ GQAFLWH +RC++S+LFM+G+GLE P+++  LLD+ +
Sbjct:   66 QIVGQAFLWHQIRCIVSILFMIGKGLEEPQVVEELLDVQK 105
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig33024.8862.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JEX6_9PHAE4.260e-1785.37PseudoU_synth_1 domain-containing protein n=1 Tax=... [more]
A0A2I0JP50_PUNGR1.370e-1170.00PseudoU_synth_1 domain-containing protein n=1 Tax=... [more]
A0A218XIH9_PUNGR1.540e-1170.00PseudoU_synth_1 domain-containing protein n=6 Tax=... [more]
A0A7S1VPD3_9STRA5.450e-1162.50tRNA pseudouridine synthase (Fragment) n=1 Tax=Gra... [more]
A7SJV8_NEMVE7.310e-1161.54Predicted protein n=1 Tax=Nematostella vectensis T... [more]
A0A2R5GGG2_9STRA1.000e-1059.52tRNA pseudouridine synthase n=1 Tax=Hondaea fermen... [more]
A0A024TF41_9STRA1.000e-1065.85tRNA pseudouridine synthase n=3 Tax=Aphanomyces in... [more]
A0A059BT35_EUCGR2.550e-1060.98PseudoU_synth_1 domain-containing protein n=3 Tax=... [more]
A0A7S2UF07_9STRA4.110e-1057.14tRNA pseudouridine synthase (Fragment) n=1 Tax=Att... [more]
A0A7S3LCH6_9STRA4.150e-1055.00tRNA pseudouridine synthase (Fragment) n=1 Tax=Amp... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig33024contigH-paniculata_contig33024:154..285 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score64.3
Seed ortholog evalue1.6e-08
Seed eggNOG ortholog45351.EDO36025
Preferred namePUS3
KEGG koko:K01855
Hectar predicted targeting categorysignal peptide
GOsGO:0001522,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009982,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0016556,GO:0016853,GO:0016866,GO:0031119,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:1901360,GO:1990481
EggNOG free text desc.mRNA pseudouridine synthesis
EggNOG OGs38DRB@33154,3B9CT@33208,COG0101@1,KOG2554@2759
EC5.4.99.45
COG Functional cat.J
Best tax levelMetazoa
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03016
Exons1
Model size132
Cds size132
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930021.3972597-CDS-H-paniculata_contig33024:153..2851622930021.3972597-CDS-H-paniculata_contig33024:153..285Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig33024 154..285 +
1691481113.611944-CDS-H-paniculata_contig33024:153..2851691481113.611944-CDS-H-paniculata_contig33024:153..285Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig33024 154..285 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig33024.8862.1prot_H-paniculata_contig33024.8862.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig33024 154..285 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig33024.8862.1

>prot_H-paniculata_contig33024.8862.1 ID=prot_H-paniculata_contig33024.8862.1|Name=mRNA_H-paniculata_contig33024.8862.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=44bp
VFFQVCGQAFLWHMVRCLMSVLFMVGRGLESPEIMSFLLDLDR*
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mRNA from alignment at H-paniculata_contig33024:154..285+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig33024.8862.1 ID=mRNA_H-paniculata_contig33024.8862.1|Name=mRNA_H-paniculata_contig33024.8862.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=132bp|location=Sequence derived from alignment at H-paniculata_contig33024:154..285+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTTTTTTCCAGGTGTGTGGTCAGGCTTTTTTGTGGCATATGGTTCGGTG
CCTGATGTCGGTGCTGTTCATGGTTGGGCGCGGACTGGAATCTCCGGAGA
TCATGTCCTTTCTTCTGGACCTCGACAGGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig33024:154..285+

>mRNA_H-paniculata_contig33024.8862.1 ID=mRNA_H-paniculata_contig33024.8862.1|Name=mRNA_H-paniculata_contig33024.8862.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=264bp|location=Sequence derived from alignment at H-paniculata_contig33024:154..285+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTTTTTTCCAGGTGTGTGGTCAGGCTTTTTTGTGGCATATGGTTCGGTG
CCTGATGTCGGTGCTGTTCATGGTTGGGCGCGGACTGGAATCTCCGGAGA
TCATGTCCTTTCTTCTGGACCTCGACAGGTGAGTTTTTTTCCAGGTGTGT
GGTCAGGCTTTTTTGTGGCATATGGTTCGGTGCCTGATGTCGGTGCTGTT
CATGGTTGGGCGCGGACTGGAATCTCCGGAGATCATGTCCTTTCTTCTGG
ACCTCGACAGGTGA
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