mRNA_H-paniculata_contig32812.8804.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig32812.8804.1
Unique NamemRNA_H-paniculata_contig32812.8804.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig32812.8804.1 vs. uniprot
Match: A0A6H5JBB0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBB0_9PHAE)

HSP 1 Score: 139 bits (350), Expect = 8.600e-32
Identity = 79/128 (61.72%), Postives = 95/128 (74.22%), Query Frame = 3 
Query:  207 IFQLLLPEVSTTSSDSGPLLLLLIMCALAPILAWGSNLVMIEHPSARSKRRRSSVSLLLSAPAMFFWGIGTSNVG-TDSLGWEPSQSSAALAVATIVVPAVDAFFASHAVERWLDKMSCQHWQFSRQA 587
            IFQLLLPEV   SSD   L LL+IM A+AP L+W + LV  E P +  KRR S VSL LSAPAMFFWG+GTS VG T  +GW  S ++AALAVATI++PA+DAFF S  VE+W DK SCQ W+FS++A
Sbjct:  491 IFQLLLPEVG--SSDK--LTLLIIMSAIAPGLSWAAGLVAREKPGSTEKRR-SLVSLFLSAPAMFFWGLGTSTVGMTHGMGWNDSATAAALAVATIIIPAMDAFFNSRKVEQWYDKWSCQRWRFSQRA 613
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BLAST of mRNA_H-paniculata_contig32812.8804.1 vs. uniprot
Match: A0A6H5KM21_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM21_9PHAE)

HSP 1 Score: 97.8 bits (242), Expect = 4.850e-18
Identity = 51/105 (48.57%), Postives = 69/105 (65.71%), Query Frame = 3 
Query:  207 IFQLLLPEVSTTSSDSGPLLLLLIMCALAPILAWGSNLVMIEHPSARSKR-RRSSVSLLLSAPAMFFWGIGTSNVGTDSLGWEPSQSSAALAVATIVVPAVDAFF 518
            IFQLLLPE     S  GPL LLL++C +AP  +WG  + +   P   + R R+++    L+ PAMFFWG+GTS +  +S  W  S S+AALAVATIV+PA+D +F
Sbjct:  383 IFQLLLPEFD--ESGDGPLYLLLVLCFIAPFWSWGVAMSVKRDPEITNTRARQTAAKYFLAIPAMFFWGVGTSKIAPNSFNWAESASAAALAVATIVIPALDTYF 485
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BLAST of mRNA_H-paniculata_contig32812.8804.1 vs. uniprot
Match: D7FWX2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWX2_ECTSI)

HSP 1 Score: 92.8 bits (229), Expect = 1.380e-16
Identity = 49/104 (47.12%), Postives = 66/104 (63.46%), Query Frame = 3 
Query:  207 IFQLLLPEVSTTSSDSGPLLLLLIMCALAPILAWGSNLVMIEHPSARSKRRRSSVSLLLSAPAMFFWGIGTSNVGTDSLGWEPSQSSAALAVATIVVPAVDAFF 518
            IFQLLLPE     S  GPL LLL++C +AP  +WG+ + +   P   + R         ++PAMFFWG+GTS +  +S  W  S S+AALAVATIV+PA+D +F
Sbjct:  265 IFQLLLPEFD--ESGDGPLYLLLVLCFIAPFWSWGAAMSVKRDPETTNTR---------ASPAMFFWGVGTSKIAPNSFNWAESASAAALAVATIVIPALDTYF 357
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BLAST of mRNA_H-paniculata_contig32812.8804.1 vs. uniprot
Match: D7FN08_ECTSI (Kinase, NEK n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN08_ECTSI)

HSP 1 Score: 92.0 bits (227), Expect = 3.510e-16
Identity = 52/117 (44.44%), Postives = 75/117 (64.10%), Query Frame = 3 
Query:  207 IFQLLLPEVSTTSSDSGPLLLLLIMCALAPILAWGSNLVMIEHPSARS--KRRRSSVSLLLSAPAMFFWGIGTSNVGTDSLGWEPSQSSAALAVATIVVPAVDAFFASHAVERWLDK 551
            +FQLLLP+++    +   L+LL IMCALAP++   +   + +  S  +  K R + +S+LL APAMFFWG+GTS VG  +LGW  S S+ ++A AT+ +PAVD+FF S       DK
Sbjct:  463 MFQLLLPQIA----EGRQLILLYIMCALAPLVKLATTGSVDDSDSKHTGVKARSNKLSVLLGAPAMFFWGVGTSTVGQTALGWSSSLSATSMAAATLAIPAVDSFFNSRKASAIGDK 575
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig32812.8804.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JBB0_9PHAE8.600e-3261.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KM21_9PHAE4.850e-1848.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FWX2_ECTSI1.380e-1647.12Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FN08_ECTSI3.510e-1644.44Kinase, NEK n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig32812contigH-paniculata_contig32812:63..2502 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1407
Cds size549
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig32812.8804.1prot_H-paniculata_contig32812.8804.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig32812 341..1922 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930012.0243301-UTR-H-paniculata_contig32812:62..3401622930012.0243301-UTR-H-paniculata_contig32812:62..340Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig32812 63..340 +
1691481109.7998319-UTR-H-paniculata_contig32812:62..3401691481109.7998319-UTR-H-paniculata_contig32812:62..340Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig32812 63..340 +
1622930012.0909595-UTR-H-paniculata_contig32812:1922..25021622930012.0909595-UTR-H-paniculata_contig32812:1922..2502Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig32812 1923..2502 +
1691481109.8319342-UTR-H-paniculata_contig32812:1922..25021691481109.8319342-UTR-H-paniculata_contig32812:1922..2502Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig32812 1923..2502 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930012.0416157-CDS-H-paniculata_contig32812:340..4201622930012.0416157-CDS-H-paniculata_contig32812:340..420Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32812 341..420 +
1691481109.8089504-CDS-H-paniculata_contig32812:340..4201691481109.8089504-CDS-H-paniculata_contig32812:340..420Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32812 341..420 +
1622930012.054538-CDS-H-paniculata_contig32812:1107..13001622930012.054538-CDS-H-paniculata_contig32812:1107..1300Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32812 1108..1300 +
1691481109.8167906-CDS-H-paniculata_contig32812:1107..13001691481109.8167906-CDS-H-paniculata_contig32812:1107..1300Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32812 1108..1300 +
1622930012.0727801-CDS-H-paniculata_contig32812:1646..19221622930012.0727801-CDS-H-paniculata_contig32812:1646..1922Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32812 1647..1922 +
1691481109.824398-CDS-H-paniculata_contig32812:1646..19221691481109.824398-CDS-H-paniculata_contig32812:1646..1922Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32812 1647..1922 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig32812.8804.1

>prot_H-paniculata_contig32812.8804.1 ID=prot_H-paniculata_contig32812.8804.1|Name=mRNA_H-paniculata_contig32812.8804.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=183bp
MCALAPILAWGSNLVMIEHPSARSKRRRSSVSLLLSAPAMFFWGIGTSNV
GTDSLGWEPSQSSAALAVATIVVPAVDAFFASHAVERWLDKMSCQHWQFS
RQARNGTDQIRDGVDVMNVILELPARLPLLARNRPPRGTVLVSSVHELPR
ALSILPSGKNSCRLLRCDFASSAPSKRRRRWR*
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mRNA from alignment at H-paniculata_contig32812:63..2502+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig32812.8804.1 ID=mRNA_H-paniculata_contig32812.8804.1|Name=mRNA_H-paniculata_contig32812.8804.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2440bp|location=Sequence derived from alignment at H-paniculata_contig32812:63..2502+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTACTAAAAGACCTCTATCTAGACTTGCAATCATGCTCAGTACACGAGCT
ACCCTACCCGTTCGGGCGTAGGTCCGTAAGGTGCCTTATTTTTCTAGGCA
GCTCCCACTGTTTGTGACTTACTCTATCTTCCGTTCCCAACTCCCATGTG
CGAATTCTACGAGTCGATCGCTTCCTTCTTCATCACTGCTGCCGTTTTCC
AACCAGATCTTCCAGCTGCTCTTGCCCGAGGTGTCGACGACCTCAAGCGA
CTCCGGTCCTCTACTACTGCTGCTGATAATGTGCGCTCTGGCCCCGATTT
TGGCATGGGGAAGCAATCTGGTCATGATAGAGCACCCTTCGGCGAGATCC
AAACGACGGTGAGCTAACTGCGAGTGTTTTTTAAAATTGATTCTTCGCCT
TAGTATCGACAGCAGTATTTTCCATTCCTGGAGTCGTCTGTCCAGCGATT
TTTCGTCGCCGCTCACTAACACTACAAATGCAGTCTGCTAAGAAGAATAA
TTATTTTGGGCTGAGCCTTCAAGTCTTGGATTTTGAGGGATGTTGAACAA
CTTTGTTTTTTATTACTTTACCTAAGAATTAGTATGGGCTCTACGATTGA
GCACCAATTCTTATACCGTTTTCTTTTTTATACCAAGCCCCAGTTTTTCA
TGACTCAGTATCTCAAGAGGGGGCCGCATCTGTCCGGTATTGCGATATCT
TGCCCCGGTAATACATTTCCGAGCCGTGTTGTGTGTCTCTTGGGGTTGGA
GCCTGATTCGCCGCTCATCAGTGCAGGGGACGAGAGTCGCCCGATCGGCC
GACGATCTCCCATTCACATGGCAGATTGTGATACCGACGAACCCAAACGT
CGTGCTGGGTTTTCGACAAATAACTTGTATTCAGCAATGTGTGGAATGCA
TTCAACACCAGGTTTGGTCTATTTTCTGGTAAAATGTATGCGGCATGGGC
GGATCATACATCCAATCTCGCTGTCTGAGTATTTCGCAACACCTACCAAA
TACACGTAATCTATCCGATATAAACTATCCGTTATTTGCGTTTAGGCGAT
CCAGCGTAAGCCTACTGCTGTCCGCGCCAGCGATGTTTTTCTGGGGAATC
GGGACAAGCAATGTCGGGACCGATTCGTTGGGATGGGAACCTTCCCAGAG
CTCGGCTGCTTTGGCCGTGGCCACCATAGTTGTTCCCGCGGTCGATGCGT
TCTTTGCGAGTCATGCAGTCGAGCGCTGGTTAGACAAGGTAAGTCCATAT
ACATAACCGTGATTCCATTCCAATGTCTTGACAATACGTCGCTTTTGATG
CTGATTGATAGTACACATCACATACACCTTGGTGTTGTGTCATTGGAAAC
AACGCAGTATGGAGATCTGCTTGCCTCTGAAACTGGTCCAAGTCGATTGC
AGTCATTAATTTGTGTAAACAGATATTCGCGCCTTTTCGTGCAGATGGAA
AGATGCTGCGTGACCGCTCCAGTTTGTCGCTATCTACCAAACCTTATTCT
CACATCCTCCCTCGGGCGTTTGTCGTTTGTGCCTACTTACGGTGCCCATG
GTGGTTTGTACCTATCATCTCGTGCGCCGCGCAGATGTCGTGCCAACATT
GGCAGTTTTCCCGCCAGGCAAGGAATGGGACGGATCAAATTCGTGATGGA
GTAGATGTGATGAACGTCATTCTGGAACTGCCTGCGCGCTTACCGTTGCT
TGCGCGGAATCGACCCCCTCGCGGCACTGTGCTTGTTTCTTCTGTTCATG
AACTTCCTCGTGCGCTTTCAATCCTGCCATCGGGAAAAAACAGTTGTCGG
TTGTTGAGGTGTGATTTCGCATCCTCAGCTCCCTCAAAACGTAGACGGAG
GTGGCGATGACAGACTTCATGATTCAATTCATTACTGAGTGATAGTCACC
TGGTTGTTGTGCACAAATACAGCCTACCCTGTTTTCGTCAACACTCCTGA
CGAATCTACGATCATGCTTCTGATTCGCGCGGTTGGTATTTTTTGAGGAA
CGATCCATGGCGCGTAGAGCTTCACCTGCTTCATTCGGAGGAGGGACCAG
GAAGTAGGCTTTTATTGTTTTTTACCCTTGGACTCATCGCCAGAGAACAT
GCGCGTACATTTATTCGCGGTGACGCCAACATAGGTGGAGCTCTACTGCC
CTAACGTATCTATTTTGAAAATACGTTTACCCCCCAGACAAATACGAATA
CAAAACGCGAATAAATACGAGAAATCTGGAAAGAATACTGTATCAGTTGA
GTTTGGGAATGTGTCCACGTGACGCGAATAGTATGCAGTGTACTCAATAT
AGTATAGAGCATCGACAAGCTCAGGCAGAGAAAGTATTCAATCTTTACAG
TACGACCCGGACAATAAACAAAGCCTGCATGGAACAGAGTGTTCGTGAGA
TGGAGAATCTATTTTCAAGAAGAGAACGGGGGATATTTTG
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Coding sequence (CDS) from alignment at H-paniculata_contig32812:63..2502+

>mRNA_H-paniculata_contig32812.8804.1 ID=mRNA_H-paniculata_contig32812.8804.1|Name=mRNA_H-paniculata_contig32812.8804.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1098bp|location=Sequence derived from alignment at H-paniculata_contig32812:63..2502+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTGCGCTCTGGCCCCGATTTTGGCATGGGGAAGCAATCTGGTCATGAT
AGAGCACCCTTCGGCGAGATCCAAACGACGATGTGCGCTCTGGCCCCGAT
TTTGGCATGGGGAAGCAATCTGGTCATGATAGAGCACCCTTCGGCGAGAT
CCAAACGACGGCGATCCAGCGTAAGCCTACTGCTGTCCGCGCCAGCGATG
TTTTTCTGGGGAATCGGGACAAGCAATGTCGGGACCGATTCGTTGGGATG
GGAACCTTCCCAGAGCTCGGCTGCTTTGGCCGTGGCCACCATAGTTGTTC
CCGCGGTCGATGCGTTCTTTGCGAGTCATGCAGTCGAGCGCTGGTTAGAC
AAGGCGATCCAGCGTAAGCCTACTGCTGTCCGCGCCAGCGATGTTTTTCT
GGGGAATCGGGACAAGCAATGTCGGGACCGATTCGTTGGGATGGGAACCT
TCCCAGAGCTCGGCTGCTTTGGCCGTGGCCACCATAGTTGTTCCCGCGGT
CGATGCGTTCTTTGCGAGTCATGCAGTCGAGCGCTGGTTAGACAAGATGT
CGTGCCAACATTGGCAGTTTTCCCGCCAGGCAAGGAATGGGACGGATCAA
ATTCGTGATGGAGTAGATGTGATGAACGTCATTCTGGAACTGCCTGCGCG
CTTACCGTTGCTTGCGCGGAATCGACCCCCTCGCGGCACTGTGCTTGTTT
CTTCTGTTCATGAACTTCCTCGTGCGCTTTCAATCCTGCCATCGGGAAAA
AACAGTTGTCGGTTGTTGAGGTGTGATTTCGCATCCTCAGCTCCCTCAAA
ACGTAGACGGAGGTGGCGATGAATGTCGTGCCAACATTGGCAGTTTTCCC
GCCAGGCAAGGAATGGGACGGATCAAATTCGTGATGGAGTAGATGTGATG
AACGTCATTCTGGAACTGCCTGCGCGCTTACCGTTGCTTGCGCGGAATCG
ACCCCCTCGCGGCACTGTGCTTGTTTCTTCTGTTCATGAACTTCCTCGTG
CGCTTTCAATCCTGCCATCGGGAAAAAACAGTTGTCGGTTGTTGAGGTGT
GATTTCGCATCCTCAGCTCCCTCAAAACGTAGACGGAGGTGGCGATGA
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