mRNA_H-paniculata_contig3275.8790.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3275.8790.1
Unique NamemRNA_H-paniculata_contig3275.8790.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig3275.8790.1 vs. uniprot
Match: A0A498M2F0_LABRO (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Labeo rohita TaxID=84645 RepID=A0A498M2F0_LABRO)

HSP 1 Score: 343 bits (879), Expect = 2.620e-104
Identity = 216/667 (32.38%), Postives = 348/667 (52.17%), Query Frame = 1
Query:    1 MKRLRSDQRGEYTGKPFRQFCAENSIKQEFSAAYTPQQNGVAERSWRSWRSIFGMARANMITANMGHRCWAEAVRSVVYCLNRAPTRPYNGGTPYEKWLGETPKLDYLRVFGCTAY--VMFQQRRNLDDKAWAGVFLGYEEDSPSYRIFNPENKSVR-----VTNTENRTSASQMRPILPTYSLPAASANPFSVLSDDDXXXESYGYSTIKDVKPASKTHPAPMSQGNTMKQLGTEVQHPRDRSPIRTRARARENRKEGPGTTTRVVKVEGTGNFREAVSKEKPTFAAEALKDPRRLPAGRKAIRTEWILKRKLKEDGSVARYKARLVAQGFSQVEGEDFFEASAPEVRMSTLHTVFSLVTEHDFELEGMDVDAAYLNAPVEEELFVKLPPMFSPSYRDVRFVRRLRKSLYSLKQSGRNWSNTLDDFLVGIGLNRSTTDSCLYFSRDDGGETDLLVAVYGDDLVIADYREK-VDECKDNISQRFRMKYYGSLSHVLGIEVRRNRPNDTITISEGSYTREVLKICGFNECRGVSTPVEGIVKILAPESSDKPSEPNGASTEYRGMVGSLMYSSTGTRPDLAYAVHLAARCMEDPCREDFSACKRIFRYPTTVPDLGITFGGKRNRHGLKGFVNADWAEDVEDRKSTRGYVVKLNAGAISWCSRKQQLV 1977
            +K LR+D  GEYT   F+ F  +  I+ E +   TP+QNGVAER  ++   +    R+ +  A +  + WAEA+ + VY  NR+PT+   G TP+E W GE PK+D+LR+FGCT Y  V   +R+ LD KA   + LGY  ++  YR+++ +   V      + N  N   A +  P+       A      +   + D        S  + V+ + +    P   G  +         P+                    T   V+       ++EA+ KE  +  A  + +   LP GRKA+ ++W+ K K+  DG+  R+KARLVAQGFSQ  G D+ E  +P VR  ++ T+ +   ++  +L  MDV  A+LN  ++EE++++ P  F    ++   V +L +S+Y LKQS R W+  LD+ L  +G  ++T D C+Y +    GE   ++AVY DD+++A   +K + E K  +++ F +K  G L+H LG+++ +      I + + +Y   VLK  G    + VSTPV+   K++      +  +P     +++  VGSL+Y ST TRPD+AYAV+  AR    P ++ ++A KRI RY     +LG+ +   + +  + GF +ADWA D  DRKS  GY+ +++  A+SW S+KQ  V
Sbjct:   10 LKVLRTDNGGEYTSSEFQDFLKKEGIRHELTVPKTPEQNGVAERMNKT---LMETVRSMLADAKLPQKFWAEALSTAVYLRNRSPTKSVKGMTPFEAWTGEKPKVDHLRIFGCTVYAHVPKDERKKLDPKAKKCILLGYGTETKGYRLYDSKLAKVFFSRDVIFNESNH--AFEKEPV-------ANEDGAVNRYVEFDCQEPDNEESPEQKVQRSERLRKPPDYYGEWVTVASNPTTEPK--------------------TVKDVLSSPDKAKWKEAMEKEMESLYANNVWNLVELPKGRKAVGSKWVFKVKVDADGTFERHKARLVAQGFSQKFGSDYDETFSPVVRFESVRTIIAQAVQYGLKLHQMDVKTAFLNGELKEEVYMQQPEGFVVKGKE-HLVCKLNRSIYGLKQSPRCWNIVLDEQLKKMGFVQTTGDPCIYTAAT--GEM-FIIAVYVDDILLAGCSDKRMMEVKKMLAKHFEIKDMGELTHFLGVKIIQKPETGEIWMGQATYAENVLKKFGMENSKPVSTPVDINTKLVKHSDDSEVMDPK----QFQSAVGSLLYLSTRTRPDIAYAVNNVARFCAKPTKQHWTAVKRIMRYLKGTLNLGLLYNKDKPKECI-GFSDADWAGDQNDRKSMSGYMFQISGAAVSWRSKKQTCV 635          
BLAST of mRNA_H-paniculata_contig3275.8790.1 vs. uniprot
Match: UPI001F004464 (DDE-type integrase/transposase/recombinase n=1 Tax=Corynebacterium parakroppenstedtii TaxID=2828363 RepID=UPI001F004464)

HSP 1 Score: 343 bits (881), Expect = 2.410e-102
Identity = 219/671 (32.64%), Postives = 362/671 (53.95%), Query Frame = 1
Query:    1 MKRLRSDQRGEYTGKPFRQFCAENSIKQEFSAAYTPQQNGVAERSWRSWRSIFGMARANMITANMGHRCWAEAVRSVVYCLNRAPTRPYNGGTPYEKWLGETPKLDYLRVFGCTAY--VMFQQRRNLDDKAWAGVFLGYEEDSPSYRIFNPENKSVRVTNTE--------NRTSASQMRPILPTYSLPAASANPFSVLSDDDXXXESYGYSTIKDVKPASKTHPAPMSQGNTMKQLGTEVQHPRDRSPIRTRARARENRKEGPGTTTRVVKVEGTGNFREAVSKEKPTFAAEALKDPRRLPAGRKAIRTEWILKRKLKEDGSVARYKARLVAQGFSQVEGEDFFEASAPEVRMSTLHTVFSLVTEHDFELEGMDVDAAYLNAPVEEELFVKLPPMFSPSYRDVRFVRRLRKSLYSLKQSGRNWSNTLDDFLVGIGLNRSTTDSCLYFSRDDGGETDLLVAVYGDDLVIADYREK-VDECKDNISQRFRMKYYGSLSHVLGIEVRRNRPNDTITISEGSYTREVLKICGFNECRGVSTPVEGIVKILAPESSDKPSEPNGASTEYRGMVGSLMYSSTGTRPDLAYAVHLAARCMEDPCREDFSACKRIFRYPTTVPDLGITFGGKRNRHGLKGFVNADWAEDVEDRKSTRGYVVKLNAGAISWCSRKQQLVT 1980
            +K +RSD+ GE+T + F+ FC ++ I++  +   +PQQNGVAER  R+   I  MAR+ + + N+    WAEAV   VY LNR+PTR   G TP E W G  P + +LRVFG  AY  V  + R  LDDK+ A +F+GY+ +S  Y+++NP+  ++ ++           + +S      I+PT      +A    V  +      S   + ++D  P S  +   + +  ++  +  + +   + + +   A         P T    V+ +    +R+A+ +E  +       +   LP G KAI  +W+ K K    G + RYKARLVA+G+SQ  G D+ E  AP  R+ T+  + SL  ++ +++  MDV +A+LN  ++EE++++ P  +    ++ + V RL+K+LY LKQ+ R W++ +D +L   G  +   +  LY    DG    L+V +Y DDL+ A   ++ +DE K ++++ F M   G +++ LGIEV+  +  D I IS+  Y +E++K    ++C  V+TPVE  +K+   +  +K       +T ++ +VGSL Y  T TRPD+ YA  L +R ME+P        +RI RY     + G+ F    N + L G+ ++DWA D++DRKST G+V  +   A +W S+KQ +VT
Sbjct:  238 IKAMRSDRGGEFTSREFQNFCEKHGIRRPLTVPRSPQQNGVAERKNRT---ILDMARSMLKSKNLPKEFWAEAVACAVYLLNRSPTRSVWGKTPQESWSGRKPGISHLRVFGSKAYAHVPDETRSKLDDKSKAFIFIGYDSNSKGYKLYNPDTNNLVISRDVEFDEEGEWDFSSHEDFNSIMPTEEEEQPTAEQ-DVQQEPTTPLTSP--TVVQDASPPSFLNERSVERARSLGDIYEDTERLENLTLLCLFADCE------PVTFEEAVQSK---KWRDAMDEEIKSIEKNDTWELTSLPKGHKAIGVKWVYKAKKNSKGEIERYKARLVAKGYSQRAGIDYDEVFAPVARLETVRLIISLAAQNKWKIHQMDVKSAFLNGVLDEEVYIQQPMGYKVKMQEDK-VLRLKKALYGLKQAPRAWNSRIDKYLQENGFAKCPHEHALYTKMKDGDI--LIVCLYVDDLIFAGNNQRMIDEFKQSMAKVFEMTDIGLMAYYLGIEVK--QLEDGIFISQEGYAKEIIKKFKMDDCNPVNTPVECGIKLSKHDEDEKVD-----TTMFKSLVGSLRYL-TCTRPDILYATGLISRYMENPTTTHLKTARRILRYLKGTINFGL-FYSTSNDYKLVGYSDSDWAGDIDDRKSTTGFVFFMGDTAFTWMSKKQPIVT 881          
BLAST of mRNA_H-paniculata_contig3275.8790.1 vs. uniprot
Match: A0A151R6U8_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=5 Tax=Cajanus cajan TaxID=3821 RepID=A0A151R6U8_CAJCA)

HSP 1 Score: 347 bits (890), Expect = 6.570e-102
Identity = 223/683 (32.65%), Postives = 346/683 (50.66%), Query Frame = 1
Query:    1 MKRLRSDQRGEYTGKPFRQFCAENSIKQEFSAAYTPQQNGVAERSWRSWRSIFGMARANMITANMGHRCWAEAVRSVVYCLNRAPTRPYNGGTPYEKWLGETPKLDYLRVFGCTAYVMF--QQRRNLDDKAWAGVFLGYEEDSPSYRIFNPENKSVRVTNTENRTSASQMRPILPTYSLPAASANPFSVLSDDDXXXESYGYSTIKDVKPASKTHPAPMSQGNTMKQLGTEVQHPRDRSPIRTRARARENRK--------------------EG-PGTTTRVVKVEGTGNFREAVSKEKPTFAAEALKDPRRLPAGRKAIRTEWILKRKLKEDGSVARYKARLVAQGFSQVEGEDFFEASAPEVRMSTLHTVFSLVTEHDFELEGMDVDAAYLNAPVEEELFVKLPPMFSPSYRDVRFVRRLRKSLYSLKQSGRNWSNTLDDFLVGIGLNRSTTDSCLYFSRDDGGETDLLVAVYGDDLVIADYREKVDECKDNISQRFRMKYYGSLSHVLGIEVRRNRPNDTITISEGSYTREVLKICGFNECRGVSTPVEGIVKILAPESSDKPSEPNGAS-TEYRGMVGSLMYSSTGTRPDLAYAVHLAARCMEDPCREDFSACKRIFRYPTTVPDLGITFGGKRNRHGLKGFVNADWAEDVEDRKSTRGYVVKLNAGAISWCSRKQQLV 1977
            +K LR+D  GEY    F  FC +  IK++F+ A+TPQQNGVAER  R+   +    RA + TA +    WAEAV++  Y +NR+P+      TP E W G+      L VFGC  YVM+  Q+R  LD K+   +FLGY ++   YR+++P  + V V+                             V ++ +   E    STIKD         +     +  +Q   E Q P + +    R   R+ +K                    EG P T    ++      +  A+ +E          +   LP GRKAI  +W+ K K   +  V RY+ARLV +G++Q EG DF E  +P VR++T+  V ++    +  LE +DV  A+L+  ++EE+++  P  F    ++   V RL KSLY LKQ+ R W    D F++ +G NR ++D C Y++R D  +  +L+    D LV+   ++++ E K  +++ F MK  G  + +LG+++ R+R N  I +S+ +Y  +VL+     +C+ +STP+    K+ +  S    +E    S   Y   VGSLMY+   TRPD+A AV   +R M DP RE +S  KRI RY     D+ + F G  +   ++G+V++D+A D++ RKST GYV  L  GA+SW S+ Q +V
Sbjct:  494 IKCLRTDNGGEYIDGDFLAFCKQEGIKRQFTVAHTPQQNGVAERMNRT---LLERTRAMLRTAGLAKSFWAEAVKTACYLINRSPSTAIGLKTPMEMWNGKPSNYSSLHVFGCPVYVMYNSQERTKLDPKSRKCIFLGYADNVKGYRLWDPTARKVVVSRDV--------------------------VFAETELQKEQENDSTIKDTSIVEIGGKSKEDDTSEAEQEHDE-QEPNEDNDGDVRRTTRQTKKPSWHSDYVMASHDAYCLLTEEGEPSTFQEALRSSDVSQWMAAMHEEIEALHRNKTWELVDLPKGRKAIGCKWVYKIKRDGNDQVERYRARLVVKGYAQKEGIDFNEIFSPVVRLTTIRVVLAMCAAFNLHLEQLDVKTAFLHGELQEEIYMLQPEGFKEQGKE-NLVCRLTKSLYGLKQAPRCWYKRFDSFIISLGYNRLSSDHCTYYNRFDDNDFIILLLYVDDMLVVGPNKDQIQELKAQLAREFDMKDLGPANKILGMQIHRDRKNRRIWLSQKNYLLKVLRRFNMQDCKPISTPLPVNYKLSSSMSPSNEAERMEMSRVPYASAVGSLMYAMICTRPDIAQAVGAVSRFMADPGREHWSIVKRILRYIKGTSDVALCFEG--SEFFVRGYVDSDFAGDLDKRKSTTGYVFTLAGGAVSWLSKLQTVV 1143          
BLAST of mRNA_H-paniculata_contig3275.8790.1 vs. uniprot
Match: A0A4Y1RBF6_PRUDU (ADP glucose pyrophosphorylase large subunit 1 n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1RBF6_PRUDU)

HSP 1 Score: 337 bits (863), Expect = 3.060e-100
Identity = 227/692 (32.80%), Postives = 352/692 (50.87%), Query Frame = 1
Query:    1 MKRLRSDQRGEYTGKPFRQFCAENSIKQEFSAAYTPQQNGVAERSWRSWRSIFGMARANMITANMGHRCWAEAVRSVVYCLNRAPTRPYNGGTPYEKWLGETPKLDYLRVFGCTAYVMF--QQRRNLDDKAWAGVFLGYEEDSPSYRIFNPENKSVRVTN------------TENRTSASQMRPILPTYSLPAASANPFSVLSDDDXXXESYGYSTIKDVKPASKTHPAPMSQGNTMKQLGTEVQHPRDRSPIRTRARAR-----------ENRK------EGPGTTTRVVKVEGTGNFREAVSKEKPTFAAEALKDPRRLPAGRKAIRTEWILKRKLKEDGSVARYKARLVAQGFSQVEGEDFFEASAPEVRMSTLHTVFSLVTEHDFELEGMDVDAAYLNAPVEEELFVKLPPMFSPSYRDVRFVRRLRKSLYSLKQSGRNWSNTLDDFLVGIGLNRSTTDSCLYFSRDDGGETDLLVAVYGDDLVIADYREKV-DECKDNISQRFRMKYYGSLSHVLGIEVRRNRPNDTITISEGSYTREVLKICGFNECRGVSTPVEGIVKILAPESSDKPSEPNGASTEYRGMVGSLMYSSTGTRPDLAYAVHLAARCMEDPCREDFSACKRIFRYPTTVPDLGITFGGKRNRHGLKGFVNADWAEDVEDRKSTRGYVVKLNAGAISWCSRKQQLVT 1980
            +K LR+D+ GEY  K F  FC E  IK++ + AYTPQQNGV+ER  R+   I  M R+ ++   +  + W EAV   V+ LNR+PT      TP E W G  P +D+ RVFGC AY     ++R+ LDDK+   VFLG  E S +Y+++NP  K + V+             +ENR+   Q    +P Y               DD   E           P ++    P  +  + +Q   E  + RD +  +  A              EN          P T T  VK E    +REA+  E  +       +   LP G++ I  +W+ + KL E G V ++KARLVA+G+ Q  G D+ E  AP  R  T+  V SL  ++ +++  +DV +A+L+  ++EE+++  PP +    ++ + V +L+K+LY LKQ+ R W + +D     +G ++   +  LY   ++ G+  L+V +Y DDL+      K+ DE K ++   F M   G + + LG+EV +    + I   +  Y +++L     ++C+   TP E  +K+   +   +       ST Y+ ++GSLMY  T TRPD+ YAV L +R ME P     +A KRI RY     D G+ F  + +  G  G+ ++D+A D++DRKST G+   LN+GAISW S+KQQ+VT
Sbjct:  150 IKTLRTDRGGEYCSKEFDAFCKEKGIKRQLTTAYTPQQNGVSERKNRT---ILNMVRSLLVKGRIPKKFWPEAVLWSVHILNRSPTFSVKNMTPQEAWSGLKPAVDHFRVFGCIAYAHIPDEKRKKLDDKSEKCVFLGVSEVSKAYKLYNPVTKKIVVSRDVIFDEDTMWNWSENRSVQQQ----IPVY---------------DDLDNEEVA-------APETQAQQPPQLEVQSSQQFEEERYNLRDENSRKRPAWMMDYDVSYSSSDDENAHFALLVDSDPITYTEAVKEE---KWREAMDNEIKSIEKNQTWELTDLPKGKQTIGVKWVFRTKLNEKGEVDKHKARLVAKGYKQKHGIDYKEVFAPVARHDTIRLVISLAAQNSWQIFQLDVKSAFLHGNLQEEVYIDQPPGYERKGKEEK-VFKLKKALYGLKQAPRAWYSRIDAHFAKLGFHKCPFEHTLYVKTEEEGKI-LMVCLYVDDLIFTGSDAKMFDEFKKSMMMEFEMTDLGLMHYFLGLEVIQTTAGNFIY--QKKYAQDILNRFQMDDCKPFGTPAEHGLKLCKDKGGKEVD-----STFYKQIIGSLMYL-TYTRPDIMYAVSLVSRYMEKPTEMHLNAAKRILRYVKGTIDYGV-FYKREDGSGFVGYTDSDYAGDIDDRKSTSGHTFLLNSGAISWSSKKQQIVT 798          
BLAST of mRNA_H-paniculata_contig3275.8790.1 vs. uniprot
Match: A0A2M4CK12_ANODA (Putative pol polyprotein (Fragment) n=1 Tax=Anopheles darlingi TaxID=43151 RepID=A0A2M4CK12_ANODA)

HSP 1 Score: 332 bits (850), Expect = 2.240e-99
Identity = 211/667 (31.63%), Postives = 343/667 (51.42%), Query Frame = 1
Query:    4 KRLRSDQRGEYTGKPFRQFCAENSIKQEFSAAYTPQQNGVAERSWRSWRSIFGMARANMITANMGHRCWAEAVRSVVYCLNRAPTRPYNGGTPYEKWLGETPKLDYLRVFGCTAYVMFQQ--RRNLDDKAWAGVFLGYEEDSPSYRIFNPENKSVRVTNT----ENRTSASQMRPILPTYSLPAASANPFSVLSDDDXXXESYGYSTIKD--VKPASKTHPAPMSQGNTMKQLGTEVQHPRDRSPIRTRARARENRKEGPGTTTRVVKVEGTGNFREAVSKEKPTFAAEALKDPRRLPAGRKAIRTEWILKRKLKEDGSVARYKARLVAQGFSQVEGEDFFEASAPEVRMSTLHTVFSLVTEHDFELEGMDVDAAYLNAPVEEELFVKLPPMFSPSYRDVRFVRRLRKSLYSLKQSGRNWSNTLDDFLVGIGLNRSTTDSCLYFSRDDGGETDLLVAVYGDDLV-IADYREKVDECKDNISQRFRMKYYGSLSHVLGIEVRRNRPNDTITISEGSYTREVLKICGFNECRGVSTPVEGIVKILAPESSDKPSEPNGASTEYRGMVGSLMYSSTGTRPDLAYAVHLAARCMEDPCREDFSACKRIFRYPTTVPDLGITFGGKRNRHGLKGFVNADWAEDVEDRKSTRGYVVKLNAGAISWCSRKQQLV 1977
            K +RSDQ GEY+ K  + F     IK +++A+Y+PQQNGVAER  RS   +  M R  +  A +  + WAEA+ + VY  N +PT+P N  TPYE W G  PK+++LR+FGC A+    +  R+ L   A    FLGY  D  +YR+ +     + ++      E    + + +    T      S  P  ++ D           T  +  V+PA +     +S+ ++  +     +  +   P R  A   +++ E P T +  ++   +  +R A+ +E          +  RLP GRKA+  +W  KRK  E+G + RYKARLVAQG+SQ  G+D+ E  AP +R +T  T+ +L ++ +  ++ +D+  AYL+A ++E++++K PP F+        V  L+KSLY LKQS R W+  +D  L  +   ++  D CLY    +G +  +L+  Y DD+V + + +E+ +E +  + Q F++   G + H LGI V  N   D   + + SY  +++   G  + +    P++    +   E S+ P+        YR +VGSL+Y S  TRPD+  +V L  R +E+P   D++  KR+ RY        +  G K      + FV+ADWA D  DRKS  G+++K +   + W +RKQ  V
Sbjct:  100 KAIRSDQGGEYSSKNLQDFYKREGIKPQYTASYSPQQNGVAERKNRS---LIEMVRCMLFDAQLEQKYWAEAMNTAVYLQNISPTKPRNN-TPYETWHGVKPKVNHLRIFGCDAWAHIPKAKRKKLGATAQKLTFLGYSYDHKAYRLLDKTTNEIHISRDVKFIEKAPCSERAKHDRETRH---QSKKPQEIIIDTTLKENPITIETQAEPEVQPAFEETREIVSEIDSDTEPRRSTRPTKGIPPDRLMANVIKHQIEQPHTYSEAIESTESTAWRAAMQEEINALQGNDTWELVRLPLGRKAVGCKWTYKRKENENGEIVRYKARLVAQGYSQKFGQDYDEVFAPVIRQATFRTILTLASKQNMIVKHLDIKNAYLHAELQEDIYMKQPPGFTKGN---DLVCHLKKSLYGLKQSARAWNAKIDRVLKEMQFQQAEADQCLYIRTHEGKQDYILI--YVDDIVAVYNTKEEYEELRKRLEQHFKLSCLGDIKHFLGIRVANN--GDRYILDQESYIEKMILRFGHEQAKTSRVPIDPAY-LKQKEESELPTN-----ASYRSLVGSLLYVSVNTRPDICLSVSLLGRKVENPTNRDWTEAKRVLRYLKATKKHRLHLGTKSTT--TECFVDADWAGDEADRKSHSGFLLKFSGALVDWGTRKQSCV 744          
BLAST of mRNA_H-paniculata_contig3275.8790.1 vs. uniprot
Match: A0A5S6QN85_TRIMR (Integrase catalytic domain-containing protein n=2 Tax=Trichuris muris TaxID=70415 RepID=A0A5S6QN85_TRIMR)

HSP 1 Score: 332 bits (851), Expect = 4.520e-99
Identity = 220/664 (33.13%), Postives = 341/664 (51.36%), Query Frame = 1
Query:   10 LRSDQRGEYTGKPFRQFCAENSIKQEFSAAYTPQQNGVAERSWRSWRSIFGMARANMITANMGHRCWAEAVRSVVYCLNRAPTRPYNGGTPYEKWLGETPKLDYLRVFGCTAYVMF--QQRRNLDDKAWAGVFLGYEEDSPSYRIFNPENKSVRVTNTENRTSASQMRPILPTYSLPAASAN---PFSVLSDDDXXXESYGYSTIKDVKPASKTHPAPMSQGNTMKQLGTEVQHPRDRSPIRTRARARENRKEGPGTTTRVVK--VEGTGNFREAVSKEKPTFAAEALKDPRRLPAGRKAIRTEWILKRKLKEDGSVARYKARLVAQGFSQVEGEDFFEASAPEVRMSTLHTVFSLVTEHDFELEGMDVDAAYLNAPVEEELFVKLPPMFSPSYRDVRFVRRLRKSLYSLKQSGRNWSNTLDDFLVGIGLNRSTTDSCLYFSRDDGGETDLLVAVYGDDLVIADYREKVD-ECKDNISQRFRMKYYGSLSHVLGIEVRRNRPNDTITISEGSYTREVLKICGFNECRGVSTPVEGIVKILAPESSDKPSEPNGASTEYRGMVGSLMYSSTGTRPDLAYAVHLAARCMEDPCREDFSACKRIFRYPTTVPDLGITFGGKRNRHGLKGFVNADWAEDVEDRKSTRGYVVKLNAGAISWCSRKQQLV 1977
             RSD   EY     + F  E  I+ + +  YTPQQNGVAER  RS   +  MAR  ++ A +  R W EA+ +  Y  NR P+R     TPYE + G  P + +LRVFG  AY +   ++RR L   A  GV +GY   +  YR+ +P+   V  + + +   + Q   +L     P A  N      +++ D+       ++ +   +P+S+    P  +   +     EV           +   +++ KE P T   +++  ++    + EAV+ E  +     + +   LP G++ I  +W+ K K  + G++  YKARLVA+GFSQ++G D+ E  AP VR  T+  +F++    +  +  +DV  AYLN  ++EELF++ PP FS    D + V RLR+SLY LKQS R W+    D L  +G   +  D CL FSR++   T   V +Y DDL+IA    ++  +    ++  F +K  G +   LG++V R   + +  + + +  R +LK  G  + + V+TP+E     L+    + P  P+ A  EYR  +GSL+Y +T TRPD+++AV    RCME P + D+ A KR+ RY    P   + F    +   L GFV+ADWA D  DRKST GY  K+    ++W SRKQ  V
Sbjct:  109 FRSDNGREYVTNALKGFFEEQGIEHQLTVPYTPQQNGVAERKNRS---LIEMARCMLLDAGLSKRFWGEAIITAAYLQNRLPSRSVEC-TPYEHFYGSKPAVSHLRVFGSKAYSLIPKERRRKLSQSAMEGVLVGYGNTTKGYRLLDPKTARVWYSRSAHIVESPQQLSVLHERKRPDAPINRPLQHKMVNLDEWGSFKNDWADVP-AEPSSERQELPR-RSERLAAKEAEVTERWSNKDYVWKV-IKDDTKE-PMTWEEMLQLPIKEREKWMEAVNAELMSLEKHKVWEIADLPPGKRTISAKWVFKAKRDDQGNIHTYKARLVARGFSQIQGRDYDETFAPVVRHETVRILFAVAAMKNMHVRHVDVKTAYLNGKLDEELFLEPPPGFSQPTTDGK-VLRLRRSLYGLKQSARVWNQVATDALQKLGFRPNRADPCL-FSRNEKNNTMSYVLLYVDDLLIAGSSPELTCDVGKQLNSYFEIKDLGEVRQYLGMQVEREE-DGSFLLYQAAKVRHLLKEHGLLDAKPVATPMEA--NFLSSTEEESPKLPDNA--EYRKAIGSLLYLATATRPDISFAVGQLCRCMEHPTQRDWKAVKRVMRYLAGSPYRKLRFSANGSIK-LSGFVDADWAGDHADRKSTSGYAFKVGTSTVAWSSRKQSFV 756          
BLAST of mRNA_H-paniculata_contig3275.8790.1 vs. uniprot
Match: A0A4Y1R9H3_PRUDU (Transposable element protein (Fragment) n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1R9H3_PRUDU)

HSP 1 Score: 337 bits (863), Expect = 3.010e-98
Identity = 219/668 (32.78%), Postives = 354/668 (52.99%), Query Frame = 1
Query:    1 MKRLRSDQRGEYTGKPFRQFCAENSIKQEFSAAYTPQQNGVAERSWRSWRSIFGMARANMITANMGHRCWAEAVRSVVYCLNRAPTRPYNGGTPYEKWLGETPKLDYLRVFGCTAY--VMFQQRRNLDDKAWAGVFLGYEEDSPSYRIFNPENKSVRVTNTENRTSASQMRPILPTYSLPAASANPFSVLSDDDXXXESYGYSTIKDVKPASKTHPAPMSQGNTMKQLGTEVQHPRDRS-----PIRTRARARENR-KEGPGTTTRVVKVEGTGNFREAVSKEKPTFAAEALKDPRRLPAGRKAIRTEWILKRKLKEDGSVARYKARLVAQGFSQVEGEDFFEASAPEVRMSTLHTVFSLVTEHDFELEGMDVDAAYLNAPVEEELFVKLPPMFSPSYRDVRFVRRLRKSLYSLKQSGRNWSNTLDDFLVGIGLNRSTTDSCLYFSRDDGGETDLLVAVYGDDLVIADYREKVDEC-KDNISQRFRMKYYGSLSHVLGIEVRRNRPNDTITISEGSYTREVLKICGFNECRGVSTPVEGIVKILAPESSDKPSEPNGASTEYRGMVGSLMYSSTGTRPDLAYAVHLAARCMEDPCREDFSACKRIFRYPTTVPDLGITFGGKRNRHGLKGFVNADWAEDVEDRKSTRGYVVKLNAGAISWCSRKQQLV 1977
            +K LR+D+ GE+T   F ++C  N IK+E +A YTPQQNGVAER  R+   I  MAR+ +   ++ +  WAEA+ + V+ LNR+PT+     TP+E W    PK+D+ ++FGCTAY  +  Q+R   D+K    +F+GY + S +YR+ +P  KS+ ++           +       +P     P S  S++    +S     I     A  + P    + N   +   ++    D +     P +     +EN  ++      RV+K   T    E V +                P  +  I  +W+ K K  EDGS+ ++KARLVA+G+SQ  G DF E  AP VRM T+ TV +L  +   ++  +DV +A+LN  +EEE++V+ P  +    R+ + V RLRK+LY LKQ+ R W+N +D +    G  RS ++  LY  ++ G    L++ +Y DDL+      ++ E  K N+ + + M   G++ + LGI+V+++  ++ I IS+G Y   +LK     + + + TP+   +K+ + + +     P   ++ Y+ +VGSL+Y  T TRPD+ +AV + +R M DP    F+A KRI RY       GI +  ++  H L G+ ++DWA  ++DRKST G+V  L +  ISW S+KQ  V
Sbjct:  483 LKVLRTDRGGEFTSNEFSEYCKSNGIKRELTARYTPQQNGVAERRNRT---IVEMARSMLKAKSLPNTFWAEAIHTAVFILNRSPTKAVKDKTPFEAWHRFKPKVDFFKIFGCTAYAHIPSQKREKFDEKGEKYIFVGYSDQSKAYRLIDPRTKSLVISRDVIFDELKAWKWENYDIEVPRFFEEPDSSHSEETQFLQS----PIPSAGTADPSSPDSTPRLNARTRSLADIYESCDLALSALEPQKFEEAVKENIWQDAMDEEIRVIKKNRTW---ELVDR----------------PKSKDIIGLKWVYKTKFNEDGSIQKHKARLVAKGYSQQPGIDFNETFAPVVRMETIRTVLALAAQLKTKVYQLDVKSAFLNGELEEEVYVEQPQGYVEKGREDK-VYRLRKALYGLKQAPRAWNNKIDHYFQQNGFTRSLSEPSLYLKKE-GTHDFLILCLYVDDLIYTSTNPRMAEVFKKNMMKEYEMTDLGTMRYFLGIQVQQS--DEGIFISQGKYAENLLKKFNMLKSKPMDTPMAINLKLTSNDGA-----PKFDASIYKSVVGSLIYL-TNTRPDIVHAVSVVSRFMSDPSNHHFAAVKRILRYIQGTKGYGIRYTQEKKAH-LVGYTDSDWAGAIDDRKSTSGHVFFLGSKVISWSSKKQSTV 1113          
BLAST of mRNA_H-paniculata_contig3275.8790.1 vs. uniprot
Match: A0A034WM55_BACDO (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Bactrocera dorsalis TaxID=27457 RepID=A0A034WM55_BACDO)

HSP 1 Score: 329 bits (843), Expect = 5.010e-98
Identity = 220/678 (32.45%), Postives = 356/678 (52.51%), Query Frame = 1
Query:    1 MKRLRSDQRGEYTGKPFRQFCAENSIKQEFSAAYTPQQNGVAERSWRSWRSIFGMARANMITANMGHRCWAEAVRSVVYCLNRAPTRPYNGGTPYEKWLGETPKLDYLRVFGCTA--YVMFQQRRNLDDKAWAGVFLGYEEDSPSYRIFNPENKSVRVTNT----ENRTSASQMRPILPTYSLPAASANPFSVLSDDDXXXESYGYSTIK-DVKPASKTHPAPMSQGNTMKQLGTEVQHPRDRSPIRTRARARENRK--------EGPGTTTRVVKVEGTGNFREAVSKEKPTFAAEALKDPRRLPAGRKAIRTEWILKRKLKEDGSVARYKARLVAQGFSQVEGEDFFEASAPEVRMSTLHTVFSLVTEHDFELEGMDVDAAYLNAPVEEELFVKLPPMFSPSYRDVRFVRRLRKSLYSLKQSGRNWSNTLDDFLVGIGLNRSTTDSCLYFSRDDGGETDLLVAVYGDDLVI-ADYREKVDECKDNISQRFRMKYYGSLSHVLGIEVRRNRPNDTITISEGSYTREVLKICGFNECRGVSTPVEGIVKILA---PESSDKPSEPNGASTEYRGMVGSLMYSSTGTRPDLAYAVHLAARCMEDPCREDFSACKRIFRYPTTVPDLGITFGGKRNRHGLKGFVNADWAEDVEDRKSTRGYVVKLNAGAISWCSRKQQLV 1977
            +K LR+D   EY  + F ++ ++  I  + +  YTP+QNGVAER  R+   I    R  ++ AN+  R WAEA  +  Y LNR P R  N  +P E W G+ P L +L+VFGC A  +V  ++R  L  K+   + +GY  +S +YR+++P  K++ V+      EN+ + +       T ++      P SV + +    E         +   +S +H     +    ++  T + H   R   R R   R N            P T    +  E    ++ A+ +E  +       +   LP G+KAI ++W+ KRK+  DG   RYKARLV +GF+Q +  D+ E  AP VR +++  + +L  +++  +  MD  +A+L+  ++EE+++  P  F         V +LRKSLY LKQS R W+  L+  LV  GL RS  D C+YF   D  +  L VAVY DD+++ A+  + +++ KD +S+ F+MK  G+ S VLG+ + +N    T+ I + +Y  +V++  G  EC  V TP++   K+ A   P + D+  E   A+  Y+  +G L++++  TRPD+ +AV+L +R   +P +  ++A KR+ RY     D G+ +  KR+   + GF +ADWA DV DR+ST GYV      AISW +++Q  V
Sbjct:   79 IKVLRTDNGREYINEVFNKYLSKYGIIHQKTTPYTPEQNGVAERLNRT---ITEKIRCMLLDANLEDRFWAEAAVTAAYLLNRTPCRG-NNLSPEELWSGKRPNLKHLKVFGCKAMVHVAKEKRSKLKPKSRECILVGYSTESKAYRLYDPVAKNIIVSCDVVFIENQINKNPPAIDAKTDTVNLWLPEPTSVANSEGEYVEELPTEDGSGETSGSSDSHTVGNHESTMEREEITGLDHEGVRRSERLRNMLRPNYNLCVTEYVSSDPNTVEEAMASEHHKLWQSAMIEEIESHDINGTWELSALPMGKKAIPSKWVFKRKVNADGDPVRYKARLVVKGFNQKQHIDYDETFAPVVRYTSIRFLLALAVKYNLTVYQMDAVSAFLHGELKEEIYMTQPSGFDDGSGR---VCKLRKSLYGLKQSSRVWNIKLNSTLVSFGLQRSNVDQCVYFLVAD--KKMLFVAVYVDDVILFANDTKLLNKLKDKLSETFKMKDLGAASSVLGMRIAQNLKEGTLKIDQSAYIADVIRRFGMEECNPVGTPLDVNQKLSAEMCPTNDDEKREM--AAVPYKQAIGCLLFAAQVTRPDICFAVNLLSRYSTNPGKAHWTAVKRVMRYLKGTIDKGLVY--KRSPDEIVGFCDADWANDVSDRRSTTGYVFSFQNAAISWATKRQHTV 743          
BLAST of mRNA_H-paniculata_contig3275.8790.1 vs. uniprot
Match: B8YLY7_LOTJA (Gag-Pol polyprotein n=1 Tax=Lotus japonicus TaxID=34305 RepID=B8YLY7_LOTJA)

HSP 1 Score: 337 bits (863), Expect = 6.980e-98
Identity = 220/678 (32.45%), Postives = 341/678 (50.29%), Query Frame = 1
Query:    1 MKRLRSDQRGEYTGKPFRQFCAENSIKQEFSAAYTPQQNGVAERSWRSWRSIFGMARANMITANMGHRCWAEAVRSVVYCLNRAPTRPYNGGTPYEKWLGETPKLDYLRVFGCTAYVMF--QQRRNLDDKAWAGVFLGYEEDSPSYRIFNP--------------ENKSVRVTNTENRTSASQMRPILPTYSLPAASANPFSVLSDDDXXXESYGYSTIKDVKPASKTHPAPMSQGNTMKQLGTEVQHPRDRSPIRTRARARENRKEGPGTTTRVVKVEGTGNFREAVSKEKPTFAAEALKDPRRLPAGRKAIRTEWILKRKLKEDGSVARYKARLVAQGFSQVEGEDFFEASAPEVRMSTLHTVFSLVTEHDFELEGMDVDAAYLNAPVEEELFVKLPPMFSPSYRDVRFVRRLRKSLYSLKQSGRNWSNTLDDFLVGIGLNRSTTDSCLYFSRDDGGETDLLVAVYGDDLVIADYREKVDECKDNISQRFRMKYYGSLSHVLGIEVRRNRPNDTITISEGSYTREVLKICGFNECRGVSTPVEGIVKI---LAPESSDKPSEPNGASTEYRGMVGSLMYSSTGTRPDLAYAVHLAARCMEDPCREDFSACKRIFRYPTTVPDLGITFGGKRNRHGLKGFVNADWAEDVEDRKSTRGYVVKLNAGAISWCSRKQQLV 1977
            +K LR+D  GEYT   F  FC +  I ++F+ A+TPQQNGVAER  R+   +    RA + TA +    WAEA ++  Y +NR+P+      TP E W G+      LRVFGC  YVM+  Q+R  LD K+    FLGY ++   YR+++P              EN+  +    +  T  +    I        + A P        XXX++    T + ++  S      M+  +    L  + +                     P T    V       +  A+ +E          +   LP GRKAI  +W+ K K   +  V RY+ARLV +G++Q EG DF E  +P VR++T+  V ++    +  LE +DV  A+L+  +EEE+++  P  F    R+   V RL KSLY LKQ+ R W    D F++ +G NR ++D C Y+ R D G+  +L+    D LV+   +++V E K  +++ F MK  G  + +LG+++ R+R +  I +S+ +Y ++VL+     +   +STP+    K+   + P S  +  E +     Y   VGSLMY+   TRPD+A AV   +R M DP +E ++A KRI RY        + FGG  +   ++G+V++D+A D++ RKST GYV  L  GA+SW S+ Q +V
Sbjct:  544 IKCLRTDNGGEYTDGDFLAFCKQEGITRQFTVAHTPQQNGVAERMNRT---LLERTRAMLKTAGLAKSFWAEAAKTACYVINRSPSTAIGLKTPMEMWKGKPGDYSSLRVFGCPVYVMYNSQERTKLDPKSRRCTFLGYADNVKGYRLWDPTARKIFVSRDVIFVENELQKEQKNDGTTKETATVEIEEKSGEENSEAEPXXXXXXXXXXXDAEPRRTTRQIRKPSWHSEYVMASHDAYCLLSEDGE---------------------PSTFHEAVNGSDASLWMAAMQEEIEALHRNNTWELVELPKGRKAIGNKWVFKIKRDGNDQVERYRARLVVKGYAQKEGIDFNEIFSPVVRLTTIRIVLAMCAAFELHLEQLDVKTAFLHGELEEEIYMLQPEGFEEKERE-NLVCRLTKSLYGLKQAPRCWYKRFDSFIMSLGYNRLSSDHCTYYKRFDDGDFIILLLYVDDMLVVGPNKDRVQELKAQLAREFDMKDLGPANKILGMQIHRDRKDRKIWLSQKNYLQKVLRRFNMQDYNPISTPLPVNYKLSSSMIPSSEAERMEMSRV--PYASAVGSLMYAMICTRPDIAQAVGTVSRFMADPGKEHWNAVKRILRYIRGTSGAALCFGG--SEFTIRGYVDSDFAGDLDKRKSTTGYVFTLAGGAVSWLSKLQTVV 1192          
BLAST of mRNA_H-paniculata_contig3275.8790.1 vs. uniprot
Match: A0A067T5Q4_GALM3 (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Galerina marginata (strain CBS 339.88) TaxID=685588 RepID=A0A067T5Q4_GALM3)

HSP 1 Score: 336 bits (861), Expect = 7.440e-98
Identity = 210/670 (31.34%), Postives = 337/670 (50.30%), Query Frame = 1
Query:    4 KRLRSDQRGEYTGKPFRQFCAENSIKQEFSAAYTPQQNGVAERSWRSWRSIFGMARANMITANMGHRCWAEAVRSVVYCLNRAPTRPYNGGTPYEKWLGETPKLDYLRVFGCTAYVMFQ-QRRNLDDKAWAGVFLGYEEDSPSYRIFNPENKSVRVTN----TENRTSASQMRPILPTYSLPAASANPFSVLSDDDXXXESYGYSTIKDVKPASKTHPAPMSQGNTMKQLGTEVQHPRDRSPIRTRARARENRKEGPGTTTRVVKVEGTGNFREAVSKEKPTFAAEALKDPRRLPAGRKAIRTEWILKRKLKEDGSVARYKARLVAQGFSQVEGEDFFEASAPEVRMSTLHTVFSLVTEHDFELEGMDVDAAYLNAPVEEELFVKLPPMFSPSYRDVRFVRRLRKSLYSLKQSGRNWSNTLDDFLVGIGLNRSTTDSCLYFSRDDGGETDLLVAVYGDDLVIADYREKVDECKDNISQRFRMKYYGSLSHVLGIEVRRNRPNDTITISEGSYTREVLKICGFNECRGVSTPVEGIVKILAPESSDKPSEPNGASTE-----YRGMVGSLMYSSTGTRPDLAYAVHLAARCMEDPCREDFSACKRIFRYPTTVPDLGITFGGKRNRHGL--KGFVNADWAEDVEDRKSTRGYVVKLNAGAISWCSRKQQLV 1977
            K +R D   EY  +  + +CAE  I+ + +A Y+P QNGVAER  R+   +  MAR+ +I  N+    WAEAVR   Y  NR+PTR  NG TP E W G  P + +L+ FGC  +++ +  +  L  K+    F+G+E+   + R ++ + ++++V+     +E    A +   ++P   L           S +         S I +   A    P P ++G +  ++  E+      + +   A       + P +           ++ +A+++E          +   LP  RKAI   W+  RK  E+G + RYKARLVAQGFSQ+ G DF    AP +R  +L  + ++    + E++ +DV  AYLN  + EE+F++ P  F         V RL+K+LY LKQSGR W+  LD  L  +  ++S  D C+Y  R + G T  +     D ++  D  ++++E K  + + F +   G    ++G+EV+R+R   TI++ + SY   +LK  G   CR VSTP++  V +     +D   EP     E     Y   VGSLMY++ GTRPD+AYAV   ++   +P    ++A KR+FRY     D  + +GG  +   +    + +AD+A D +DRKS  GY + L   AI+W S+KQ  +
Sbjct:  477 KLVRVDNGTEYINQKTKDWCAEKGIEIQTTAPYSPSQNGVAERFNRT---LMEMARSMLIGRNLPRFLWAEAVRHAAYLRNRSPTRALNGKTPEEAWSGRKPNMSHLQEFGCDVWILNEGSQSKLAPKSTKHTFVGFEDGPKAVRYYDSKTRNIKVSRNYIFSEKEPEAIEFE-LVPRLELEGELKGNSEPQSPEKTPKSPASKSKINNPD-ARLPAPRPRNEGTSQDEIDEEIIANLASNELGFVASLNNANDDLPQSINEAKASPEWEHWEKAINEEYSLLEGMETWELDDLPPERKAIGCRWVFLRKYNENGEIIRYKARLVAQGFSQIPGMDFDGTFAPVMRHDSLRALLAIAAIKNLEIQQLDVKGAYLNGDLREEIFMRQPDGFHDG---TSKVCRLKKTLYGLKQSGREWNRKLDKVLTELRFSKSNVDHCVYI-RTENGHTSYITVWVDDLMIFTDKSDEMNEIKAYLKKEFEISDLGEPKLIIGLEVKRDRKKHTISLGQTSYVDRILKKYGMENCRPVSTPMDPNVVLTRVNENDVKDEPREDRDERLGGRYAAAVGSLMYAAIGTRPDIAYAVQKLSKYSSNPGNSHWTALKRVFRYLAGTRDRVLFYGGDVDEDEVIFSAYCDADFASDSDDRKSISGYTLFLGNAAIAWSSKKQTTI 1137          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3275.8790.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A498M2F0_LABRO2.620e-10432.38Retrovirus-related Pol poly from transposon TNT 1-... [more]
UPI001F0044642.410e-10232.64DDE-type integrase/transposase/recombinase n=1 Tax... [more]
A0A151R6U8_CAJCA6.570e-10232.65Retrovirus-related Pol polyprotein from transposon... [more]
A0A4Y1RBF6_PRUDU3.060e-10032.80ADP glucose pyrophosphorylase large subunit 1 n=1 ... [more]
A0A2M4CK12_ANODA2.240e-9931.63Putative pol polyprotein (Fragment) n=1 Tax=Anophe... [more]
A0A5S6QN85_TRIMR4.520e-9933.13Integrase catalytic domain-containing protein n=2 ... [more]
A0A4Y1R9H3_PRUDU3.010e-9832.78Transposable element protein (Fragment) n=1 Tax=Pr... [more]
A0A034WM55_BACDO5.010e-9832.45Retrovirus-related Pol polyprotein from transposon... [more]
B8YLY7_LOTJA6.980e-9832.45Gag-Pol polyprotein n=1 Tax=Lotus japonicus TaxID=... [more]
A0A067T5Q4_GALM37.440e-9831.34Integrase catalytic domain-containing protein (Fra... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3275contigH-paniculata_contig3275:9102..11398 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score327.8
Seed ortholog evalue1.2e-86
Seed eggNOG ortholog67593.Physo141588
Hectar predicted targeting categoryother localisation
EggNOG free text desc.gag-polypeptide of LTR copia-type
EggNOG OGs3QHJF@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons5
Model size1983
Cds size1983
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3275.8790.1prot_H-paniculata_contig3275.8790.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3275 9102..11398 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930010.0135064-CDS-H-paniculata_contig3275:9101..95651622930010.0135064-CDS-H-paniculata_contig3275:9101..9565Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3275 9102..9565 +
1691481108.9521167-CDS-H-paniculata_contig3275:9101..95651691481108.9521167-CDS-H-paniculata_contig3275:9101..9565Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3275 9102..9565 +
1622930010.0325496-CDS-H-paniculata_contig3275:9721..98971622930010.0325496-CDS-H-paniculata_contig3275:9721..9897Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3275 9722..9897 +
1691481108.963999-CDS-H-paniculata_contig3275:9721..98971691481108.963999-CDS-H-paniculata_contig3275:9721..9897Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3275 9722..9897 +
1622930010.0506272-CDS-H-paniculata_contig3275:9911..101271622930010.0506272-CDS-H-paniculata_contig3275:9911..10127Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3275 9912..10127 +
1691481108.9729083-CDS-H-paniculata_contig3275:9911..101271691481108.9729083-CDS-H-paniculata_contig3275:9911..10127Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3275 9912..10127 +
1622930010.0653994-CDS-H-paniculata_contig3275:10208..109921622930010.0653994-CDS-H-paniculata_contig3275:10208..10992Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3275 10209..10992 +
1691481108.981929-CDS-H-paniculata_contig3275:10208..109921691481108.981929-CDS-H-paniculata_contig3275:10208..10992Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3275 10209..10992 +
1622930010.0779784-CDS-H-paniculata_contig3275:11055..113981622930010.0779784-CDS-H-paniculata_contig3275:11055..11398Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3275 11056..11398 +
1691481108.9918175-CDS-H-paniculata_contig3275:11055..113981691481108.9918175-CDS-H-paniculata_contig3275:11055..11398Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3275 11056..11398 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3275.8790.1

>prot_H-paniculata_contig3275.8790.1 ID=prot_H-paniculata_contig3275.8790.1|Name=mRNA_H-paniculata_contig3275.8790.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=661bp
MKRLRSDQRGEYTGKPFRQFCAENSIKQEFSAAYTPQQNGVAERSWRSWR
SIFGMARANMITANMGHRCWAEAVRSVVYCLNRAPTRPYNGGTPYEKWLG
ETPKLDYLRVFGCTAYVMFQQRRNLDDKAWAGVFLGYEEDSPSYRIFNPE
NKSVRVTNTENRTSASQMRPILPTYSLPAASANPFSVLSDDDDDDESYGY
STIKDVKPASKTHPAPMSQGNTMKQLGTEVQHPRDRSPIRTRARARENRK
EGPGTTTRVVKVEGTGNFREAVSKEKPTFAAEALKDPRRLPAGRKAIRTE
WILKRKLKEDGSVARYKARLVAQGFSQVEGEDFFEASAPEVRMSTLHTVF
SLVTEHDFELEGMDVDAAYLNAPVEEELFVKLPPMFSPSYRDVRFVRRLR
KSLYSLKQSGRNWSNTLDDFLVGIGLNRSTTDSCLYFSRDDGGETDLLVA
VYGDDLVIADYREKVDECKDNISQRFRMKYYGSLSHVLGIEVRRNRPNDT
ITISEGSYTREVLKICGFNECRGVSTPVEGIVKILAPESSDKPSEPNGAS
TEYRGMVGSLMYSSTGTRPDLAYAVHLAARCMEDPCREDFSACKRIFRYP
TTVPDLGITFGGKRNRHGLKGFVNADWAEDVEDRKSTRGYVVKLNAGAIS
WCSRKQQLVT*
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mRNA from alignment at H-paniculata_contig3275:9102..11398+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3275.8790.1 ID=mRNA_H-paniculata_contig3275.8790.1|Name=mRNA_H-paniculata_contig3275.8790.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2297bp|location=Sequence derived from alignment at H-paniculata_contig3275:9102..11398+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAGCGCCTTCGGTCGGATCAGCGAGGAGAATATACTGGGAAGCCTTT TAGGCAATTCTGCGCGGAAAATAGCATCAAGCAGGAGTTCTCTGCCGCCT ACACACCTCAACAAAACGGTGTGGCGGAGCGCAGCTGGCGCAGCTGGCGC AGCATTTTCGGGATGGCAAGAGCCAACATGATCACCGCCAACATGGGTCA TCGATGTTGGGCGGAAGCGGTGCGCTCGGTAGTGTACTGCCTAAATCGCG CCCCGACACGACCGTACAATGGAGGAACGCCGTATGAAAAATGGCTCGGC GAGACGCCAAAGTTGGACTACCTTCGCGTCTTCGGCTGCACGGCGTATGT TATGTTCCAGCAGAGACGCAACCTCGACGACAAAGCATGGGCGGGGGTGT TTCTAGGGTACGAAGAAGACAGCCCGAGTTATCGCATATTTAACCCGGAA AACAAGAGCGTCCGGTTGAGGAGGAACGTGGAATTTGACGAAGAGGACTT CGTAACCGATCATCGCGGATAGAAGGAGCACGACGGGACGTGCAACATAA AAGATTGTTTTTTAACACCGCCAGTCACGCCAGCAATCACTCGATCCCGC GCCCAAGGCGAGCAAGGAAGCGTAACTAACACGGAAAACCGGACGTCGGC GTCACAAATGCGGCCGATATTGCCGACATATTCGCTGCCAGCCGCCAGCG CAAACCCATTCAGTGTCTTGAGCGATGATGATGATGATGACGAAAGTTAC GGCTACTCCACGATAAAGGATGTGAAGCCCGCGTCGAAGACGCACCGTCA GCAGGGACAGCTGCACCCATGTCGCAGGGGAACACAATGAAGCAGTTAGG GACGGAGGTGCAACATCCGCGAGATCGATCACCAATACGAACACGGGCGA GAGCGAGGGAAAACCGCAAAGAAGGTCCAGGCACTACCACACGCGTGGTA AAAGTGGAAGGCACTGGCAACTTTAGAGAGGCGGTATCTAAGGAGAAGCC GACTTTCGCGGCAGAAGCATTAAAGGGTTCAGAGGCGGGAAAATGGCGCG CGGCAATGGAGGAAGAATGAGGGGCGTTGGTGGAAAATGGAACATAGGAA AGCGAAGACCCGAGGAGGTTACCGGCAGGGCGGAAGGCGATTCGTACGGA ATGGATTCTCAAGCGGAAACTGAAGGAGGACGGCAGCGTGGCACGCTACA AAGCGCGGCTGGTGGCTCAAGGCTTTTCACAGGTGGAGGGTGAAGATTTC TTTGAAGCCAGTGCCCCTGAAGTTCGCATGTCGACGTTACATACTGTTTT TAGCCTGGTCACCGAACATGATTTCGAATTAGAAGGCATGGACGTAGATG CGGCGTATTTGAACGCCCCCGTAGAAGAAGAGCTGTTTGTTAAGCTACCC CCAATGTTTTCTCCTTCCTATCGAGACGTACGGTTTGTGCGTCGCCTGCG TAAAAGCCTGTATAGTCTCAAGCAGAGCGGCCGTAACTGGAGTAACACTC TTGACGATTTTCTTGTTGGGATAGGACTCAACCGTTCCACTACCGACTCA TGCTTGTACTTTTCTCGCGACGATGGGGGAGAGACAGACCTTCTGGTGGC CGTGTATGGTGACGACCTGGTCATTGCTGACTATCGTGAGAAAGTAGACG AGTGCAAGGATAACATAAGTCAGCGTTTTAGGATGAAATACTACGGCTCT CTCTCGCACGTGTTGGGAATAGAAGTACGACGTAACCGCCCTAATGATAC CATAACCATCTCGGAGGGTAGCTACACCCGCGAGGTTCTAAAAATATGTG GCTTTAACGAGTGTCGAGGTGTATCCACCCCTGTAGAGGGAATAGTGAAG ATTTTGGCACCCGAGTCATCCGACAAGCCCTCCGAACCGAAGTCTCTTGG GGCTGTACTGTCGCACATAGGCGCATGAATACAAGAAAGCAGCAGAGGGA AAAGTGGCGCTTCAACTGAATACAGAGGCATGGTCGGATCACTTATGTAC TCCTCGACAGGAACTAGACCTGATTTAGCATACGCGGTACACCTAGCAGC ACGTTGTATGGAGGACCCATGTCGGGAAGACTTCAGTGCATGCAAGCGCA TTTTTCGTTATCCCACTACTGTGCCTGACCTGGGCATTACGTTCGGCGGT AAGAGAAATCGTCACGGCCTGAAAGGATTCGTTAATGCCGATTGGGCGGA AGATGTCGAGGACCGAAAATCCACAAGAGGTTACGTTGTCAAACTAAACG CTGGTGCGATAAGTTGGTGTTCTAGGAAGCAACAGTTAGTCACGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig3275:9102..11398+

>mRNA_H-paniculata_contig3275.8790.1 ID=mRNA_H-paniculata_contig3275.8790.1|Name=mRNA_H-paniculata_contig3275.8790.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3966bp|location=Sequence derived from alignment at H-paniculata_contig3275:9102..11398+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAGCGCCTTCGGTCGGATCAGCGAGGAGAATATACTGGGAAGCCTTT
TAGGCAATTCTGCGCGGAAAATAGCATCAAGCAGGAGTTCTCTGCCGCCT
ACACACCTCAACAAAACGGTGTGGCGGAGCGCAGCTGGCGCAGCTGGCGC
AGCATTTTCGGGATGGCAAGAGCCAACATGATCACCGCCAACATGGGTCA
TCGATGTTGGGCGGAAGCGGTGCGCTCGGTAGTGTACTGCCTAAATCGCG
CCCCGACACGACCGTACAATGGAGGAACGCCGTATGAAAAATGGCTCGGC
GAGACGCCAAAGTTGGACTACCTTCGCGTCTTCGGCTGCACGGCGTATGT
TATGTTCCAGCAGAGACGCAACCTCGACGACAAAGCATGGGCGGGGGTGT
TTCTAGGGTACGAAGAAGACAGCCCGAGTTATCGCATATTTAACCCGGAA
AACAAGAGCGTCCGATGAAGCGCCTTCGGTCGGATCAGCGAGGAGAATAT
ACTGGGAAGCCTTTTAGGCAATTCTGCGCGGAAAATAGCATCAAGCAGGA
GTTCTCTGCCGCCTACACACCTCAACAAAACGGTGTGGCGGAGCGCAGCT
GGCGCAGCTGGCGCAGCATTTTCGGGATGGCAAGAGCCAACATGATCACC
GCCAACATGGGTCATCGATGTTGGGCGGAAGCGGTGCGCTCGGTAGTGTA
CTGCCTAAATCGCGCCCCGACACGACCGTACAATGGAGGAACGCCGTATG
AAAAATGGCTCGGCGAGACGCCAAAGTTGGACTACCTTCGCGTCTTCGGC
TGCACGGCGTATGTTATGTTCCAGCAGAGACGCAACCTCGACGACAAAGC
ATGGGCGGGGGTGTTTCTAGGGTACGAAGAAGACAGCCCGAGTTATCGCA
TATTTAACCCGGAAAACAAGAGCGTCCGCGTAACTAACACGGAAAACCGG
ACGTCGGCGTCACAAATGCGGCCGATATTGCCGACATATTCGCTGCCAGC
CGCCAGCGCAAACCCATTCAGTGTCTTGAGCGATGATGATGATGATGACG
AAAGTTACGGCTACTCCACGATAAAGGATGTGAAGCCCGCGTCGAAGACG
CACCCGTAACTAACACGGAAAACCGGACGTCGGCGTCACAAATGCGGCCG
ATATTGCCGACATATTCGCTGCCAGCCGCCAGCGCAAACCCATTCAGTGT
CTTGAGCGATGATGATGATGATGACGAAAGTTACGGCTACTCCACGATAA
AGGATGTGAAGCCCGCGTCGAAGACGCACCCTGCACCCATGTCGCAGGGG
AACACAATGAAGCAGTTAGGGACGGAGGTGCAACATCCGCGAGATCGATC
ACCAATACGAACACGGGCGAGAGCGAGGGAAAACCGCAAAGAAGGTCCAG
GCACTACCACACGCGTGGTAAAAGTGGAAGGCACTGGCAACTTTAGAGAG
GCGGTATCTAAGGAGAAGCCGACTTTCGCGGCAGAAGCATTAAAGGCTGC
ACCCATGTCGCAGGGGAACACAATGAAGCAGTTAGGGACGGAGGTGCAAC
ATCCGCGAGATCGATCACCAATACGAACACGGGCGAGAGCGAGGGAAAAC
CGCAAAGAAGGTCCAGGCACTACCACACGCGTGGTAAAAGTGGAAGGCAC
TGGCAACTTTAGAGAGGCGGTATCTAAGGAGAAGCCGACTTTCGCGGCAG
AAGCATTAAAGGACCCGAGGAGGTTACCGGCAGGGCGGAAGGCGATTCGT
ACGGAATGGATTCTCAAGCGGAAACTGAAGGAGGACGGCAGCGTGGCACG
CTACAAAGCGCGGCTGGTGGCTCAAGGCTTTTCACAGGTGGAGGGTGAAG
ATTTCTTTGAAGCCAGTGCCCCTGAAGTTCGCATGTCGACGTTACATACT
GTTTTTAGCCTGGTCACCGAACATGATTTCGAATTAGAAGGCATGGACGT
AGATGCGGCGTATTTGAACGCCCCCGTAGAAGAAGAGCTGTTTGTTAAGC
TACCCCCAATGTTTTCTCCTTCCTATCGAGACGTACGGTTTGTGCGTCGC
CTGCGTAAAAGCCTGTATAGTCTCAAGCAGAGCGGCCGTAACTGGAGTAA
CACTCTTGACGATTTTCTTGTTGGGATAGGACTCAACCGTTCCACTACCG
ACTCATGCTTGTACTTTTCTCGCGACGATGGGGGAGAGACAGACCTTCTG
GTGGCCGTGTATGGTGACGACCTGGTCATTGCTGACTATCGTGAGAAAGT
AGACGAGTGCAAGGATAACATAAGTCAGCGTTTTAGGATGAAATACTACG
GCTCTCTCTCGCACGTGTTGGGAATAGAAGTACGACGTAACCGCCCTAAT
GATACCATAACCATCTCGGAGGGTAGCTACACCCGCGAGGTTCTAAAAAT
ATGTGGCTTTAACGAGTGTCGAGGTGTATCCACCCCTGTAGAGGGAATAG
TGAAGATTTTGGCACCCGAGTCATCCGACAAGCCCTCCGAACCGAAACCC
GAGGAGGTTACCGGCAGGGCGGAAGGCGATTCGTACGGAATGGATTCTCA
AGCGGAAACTGAAGGAGGACGGCAGCGTGGCACGCTACAAAGCGCGGCTG
GTGGCTCAAGGCTTTTCACAGGTGGAGGGTGAAGATTTCTTTGAAGCCAG
TGCCCCTGAAGTTCGCATGTCGACGTTACATACTGTTTTTAGCCTGGTCA
CCGAACATGATTTCGAATTAGAAGGCATGGACGTAGATGCGGCGTATTTG
AACGCCCCCGTAGAAGAAGAGCTGTTTGTTAAGCTACCCCCAATGTTTTC
TCCTTCCTATCGAGACGTACGGTTTGTGCGTCGCCTGCGTAAAAGCCTGT
ATAGTCTCAAGCAGAGCGGCCGTAACTGGAGTAACACTCTTGACGATTTT
CTTGTTGGGATAGGACTCAACCGTTCCACTACCGACTCATGCTTGTACTT
TTCTCGCGACGATGGGGGAGAGACAGACCTTCTGGTGGCCGTGTATGGTG
ACGACCTGGTCATTGCTGACTATCGTGAGAAAGTAGACGAGTGCAAGGAT
AACATAAGTCAGCGTTTTAGGATGAAATACTACGGCTCTCTCTCGCACGT
GTTGGGAATAGAAGTACGACGTAACCGCCCTAATGATACCATAACCATCT
CGGAGGGTAGCTACACCCGCGAGGTTCTAAAAATATGTGGCTTTAACGAG
TGTCGAGGTGTATCCACCCCTGTAGAGGGAATAGTGAAGATTTTGGCACC
CGAGTCATCCGACAAGCCCTCCGAACCGAATGGCGCTTCAACTGAATACA
GAGGCATGGTCGGATCACTTATGTACTCCTCGACAGGAACTAGACCTGAT
TTAGCATACGCGGTACACCTAGCAGCACGTTGTATGGAGGACCCATGTCG
GGAAGACTTCAGTGCATGCAAGCGCATTTTTCGTTATCCCACTACTGTGC
CTGACCTGGGCATTACGTTCGGCGGTAAGAGAAATCGTCACGGCCTGAAA
GGATTCGTTAATGCCGATTGGGCGGAAGATGTCGAGGACCGAAAATCCAC
AAGAGGTTACGTTGTCAAACTAAACGCTGGTGCGATAAGTTGGTGTTCTA
GGAAGCAACAGTTAGTCACGTGATGGCGCTTCAACTGAATACAGAGGCAT
GGTCGGATCACTTATGTACTCCTCGACAGGAACTAGACCTGATTTAGCAT
ACGCGGTACACCTAGCAGCACGTTGTATGGAGGACCCATGTCGGGAAGAC
TTCAGTGCATGCAAGCGCATTTTTCGTTATCCCACTACTGTGCCTGACCT
GGGCATTACGTTCGGCGGTAAGAGAAATCGTCACGGCCTGAAAGGATTCG
TTAATGCCGATTGGGCGGAAGATGTCGAGGACCGAAAATCCACAAGAGGT
TACGTTGTCAAACTAAACGCTGGTGCGATAAGTTGGTGTTCTAGGAAGCA
ACAGTTAGTCACGTGA
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