prot_H-paniculata_contig3256.8755.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig3256.8755.1
Unique Nameprot_H-paniculata_contig3256.8755.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length564
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3256.8755.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 162..222
e-value: 8.8E-9
score: 35.3
coord: 92..152
e-value: 3.6E-14
score: 52.6
coord: 512..560
e-value: 3.5E-7
score: 30.2
coord: 32..83
e-value: 2.6E-8
score: 33.8
coord: 442..501
e-value: 6.4E-12
score: 45.4
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 176..209
e-value: 3.9E-7
score: 27.8
coord: 422..455
e-value: 3.6E-6
score: 24.8
coord: 386..420
e-value: 8.3E-6
score: 23.7
coord: 107..140
e-value: 8.8E-8
score: 29.9
coord: 246..279
e-value: 0.0016
score: 16.5
coord: 212..244
e-value: 9.5E-6
score: 23.5
coord: 491..525
e-value: 6.8E-7
score: 27.1
coord: 526..560
e-value: 1.3E-4
score: 19.9
coord: 353..385
e-value: 4.6E-5
score: 21.3
coord: 141..174
e-value: 1.6E-7
score: 29.0
coord: 281..315
e-value: 1.0E-6
score: 26.5
coord: 456..490
e-value: 9.1E-7
score: 26.7
coord: 71..105
e-value: 8.8E-9
score: 33.0
coord: 316..349
e-value: 5.2E-6
score: 24.3
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 279..325
e-value: 1.8E-11
score: 44.0
coord: 383..430
e-value: 3.3E-9
score: 36.8
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 246..275
e-value: 8.6E-4
score: 19.4
coord: 353..381
e-value: 0.0013
score: 18.8
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 454..488
score: 11.959
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 104..138
score: 12.101
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 244..278
score: 10.095
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 209..243
score: 10.161
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 349..383
score: 9.131
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 314..348
score: 11.871
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 489..523
score: 11.981
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 139..173
score: 12.068
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 279..313
score: 12.156
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 524..558
score: 11.082
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 34..68
score: 10.063
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 384..418
score: 10.643
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 419..453
score: 11.586
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 174..208
score: 11.937
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 69..103
score: 12.463
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 116..223
e-value: 6.1E-34
score: 118.9
coord: 351..466
e-value: 1.0E-31
score: 111.7
coord: 467..562
e-value: 6.1E-28
score: 99.4
coord: 1..115
e-value: 1.6E-29
score: 104.6
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 224..349
e-value: 1.9E-35
score: 124.9
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 125..272
coord: 413..560
coord: 34..154
coord: 254..447

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3256contigH-paniculata_contig3256:3545..5236 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3256.8755.1mRNA_H-paniculata_contig3256.8755.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig3256 2338..5412 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig3256.8755.1 ID=prot_H-paniculata_contig3256.8755.1|Name=mRNA_H-paniculata_contig3256.8755.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=564bp
MRLLKEAGFTRNWEDARDLLLGALARDDADAVVNVYVYTAAVNVAAKCRK
WKQALGIMSVMRRKGVQPNAVTYHLAINACGKNSKWEQAMDLMRQMQEEG
FQPDVATYNSVITACKNGEQWELAMGMFREMQSEGITPDIFSYNCAISAC
GGSGKWEQAVDLLRMMQGEGVTPDDISYTSAIKACGASGEAEEAMNLLVE
MQRKGIVPNFRSYNYAIIACGNSEKWEEAMGLLREMQREGISTDAISYTS
TIRACGDCGKWQQATSLLREMQMEDITLDAVCYNSVIKSCIPDGRWEQAL
GLLREMKRENIDPDVVSFTLVMTACGHSGKSEQAVGLLREMQEEGIPPGV
LGYSSAIAACGSNGQGEHIVDLLAEMKREGIHPDAVCYNAAIAVYRDTGK
WEMVMELFCQMQRDSITPDIASYTSAIMACRRGGHWEQALTILKEMKRGG
ITPDVVSYNSAIIACADSEQWQQAMDLLREMHREGITPDVVSYNSAITAC
TKSGKWEHSVGLLREMQRESITPNVVSYRSAIIACDKGGKREHAIDLFEE
MQRDGIAPDVTLG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf