mRNA_H-paniculata_contig3256.8755.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3256.8755.1
Unique NamemRNA_H-paniculata_contig3256.8755.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3256.8755.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3256contigH-paniculata_contig3256:2338..5412 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size2170
Cds size1692
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3256.8755.1prot_H-paniculata_contig3256.8755.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3256 3545..5236 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930005.5333235-UTR-H-paniculata_contig3256:2337..23971622930005.5333235-UTR-H-paniculata_contig3256:2337..2397Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3256 2338..2397 +
1691481107.2670085-UTR-H-paniculata_contig3256:2337..23971691481107.2670085-UTR-H-paniculata_contig3256:2337..2397Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3256 2338..2397 +
1622930005.5538604-UTR-H-paniculata_contig3256:3302..35441622930005.5538604-UTR-H-paniculata_contig3256:3302..3544Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3256 3303..3544 +
1691481107.2767782-UTR-H-paniculata_contig3256:3302..35441691481107.2767782-UTR-H-paniculata_contig3256:3302..3544Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3256 3303..3544 +
1622930005.5820017-UTR-H-paniculata_contig3256:5236..54121622930005.5820017-UTR-H-paniculata_contig3256:5236..5412Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3256 5237..5412 +
1691481107.2920675-UTR-H-paniculata_contig3256:5236..54121691481107.2920675-UTR-H-paniculata_contig3256:5236..5412Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3256 5237..5412 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930005.5686255-CDS-H-paniculata_contig3256:3544..52361622930005.5686255-CDS-H-paniculata_contig3256:3544..5236Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3256 3545..5236 +
1691481107.2839823-CDS-H-paniculata_contig3256:3544..52361691481107.2839823-CDS-H-paniculata_contig3256:3544..5236Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3256 3545..5236 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3256.8755.1

>prot_H-paniculata_contig3256.8755.1 ID=prot_H-paniculata_contig3256.8755.1|Name=mRNA_H-paniculata_contig3256.8755.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=564bp
MRLLKEAGFTRNWEDARDLLLGALARDDADAVVNVYVYTAAVNVAAKCRK
WKQALGIMSVMRRKGVQPNAVTYHLAINACGKNSKWEQAMDLMRQMQEEG
FQPDVATYNSVITACKNGEQWELAMGMFREMQSEGITPDIFSYNCAISAC
GGSGKWEQAVDLLRMMQGEGVTPDDISYTSAIKACGASGEAEEAMNLLVE
MQRKGIVPNFRSYNYAIIACGNSEKWEEAMGLLREMQREGISTDAISYTS
TIRACGDCGKWQQATSLLREMQMEDITLDAVCYNSVIKSCIPDGRWEQAL
GLLREMKRENIDPDVVSFTLVMTACGHSGKSEQAVGLLREMQEEGIPPGV
LGYSSAIAACGSNGQGEHIVDLLAEMKREGIHPDAVCYNAAIAVYRDTGK
WEMVMELFCQMQRDSITPDIASYTSAIMACRRGGHWEQALTILKEMKRGG
ITPDVVSYNSAIIACADSEQWQQAMDLLREMHREGITPDVVSYNSAITAC
TKSGKWEHSVGLLREMQRESITPNVVSYRSAIIACDKGGKREHAIDLFEE
MQRDGIAPDVTLG*
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mRNA from alignment at H-paniculata_contig3256:2338..5412+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3256.8755.1 ID=mRNA_H-paniculata_contig3256.8755.1|Name=mRNA_H-paniculata_contig3256.8755.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3075bp|location=Sequence derived from alignment at H-paniculata_contig3256:2338..5412+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTCGCACTGCGTATTTGCTTGTGCCGCTTGATCTCCGGCTGCCGAAGAGA
AGAACGCAAGGTGCGTTTGTGTATGCATGGTGTCGTGTTCGACGACACAG
ACGCAGACTGGCTCTAATTGCTGATGTCTATGACCTCGATTGCATGGCGT
CTTCCGCGCCAGGCATCTGCAAGGCAGCGCGTGCGTTCCCTCGTACCTCC
TGTAAGCGGCAATTCGGCAGTTTTTCGGCTGGATCTTATTTACGCTGAAG
CCATTTCATGATATATCAGATGCTTGAGATGATCTAGCTTTCGCGAGCCA
GAATGTGGATAGATACGACCGCGAATTTGATTTTTCGAAATTCGAGGGGT
TCTCCTCGCCTAAATGATAATATTACAGGTTGCATGTAGGCATGTTGTAA
TCTGGACAGTTTATCACTTAACACGTAGATGAAGAATATGTCCGTGCAGC
CTTAGTGCTGCACTTCACAAGAAATCCAGCAAATATTTTTGTTACCGACG
AGCGTAGACATCATGGCCGTATTTGACCCACCAAAGTGATTTGTGTTCTG
GTGTCTACCCGCTGCCGTTCCAGTCTCTCCTATTATACGGATCATATTAC
TAGTGAGGACGTTTTGGGCGGGCATGAGGAAATCTGGAAACTGGAAATTT
GGAATGGAACGTAAAAGAGGGGGGCAAACTGATTCAAAATTCAAAATGAA
ATCGAACCGAACCTTTGGGCCATATCAAAAGAGCTGCGACCCCTTCGGAA
TTTTAAAAGCCGGGAATTTCGATGCTTTTCAAGTTCCACGCCAAACTCCC
AGTTATTTCCAGATTTCATCGTTTCTATCCAAACGATACTTGCTGTATTG
ATGACCCTCACGGTGCTTTGCTTCCTGTGTACCCTTCCTTTCTCGTGTCT
TCTCGACGTCCTCGGGTTTCTGATGTACCTCTTTTCGCCATTTTGTTCGC
AATCCGAACCTCAAGAAGGGTTTGTCCACTTGCAACATCTACCAGGGCAG
GCACCTCGAACTGATGGATTCGCTCGTGGTTGGACGCAACAAGCCGTTTT
TTCGTCGACTGCGGGGGGTGCCCAAGGGAGCAGCAGGCAAGGCGCGGGGG
GTGGAACGCCAGACCATGTGGGTGGACAGGGTGGGTTCGATGGGAGTCGG
AGCACGAAGCGGAAGCGGGGGGGTTATCGTGGTTTCTCTCCCGTTACACA
GGAGTATATGAGGCTATTGAAGGAGGCTGGGTTCACACGGAACTGGGAGG
ATGCGAGAGATCTCCTGCTTGGCGCCCTTGCTCGCGATGACGCGGATGCT
GTCGTAAACGTGTATGTCTACACGGCGGCTGTGAATGTCGCGGCGAAGTG
CAGAAAGTGGAAGCAGGCCCTTGGAATTATGTCTGTTATGAGGCGAAAGG
GCGTGCAGCCGAACGCCGTAACCTACCACTTGGCGATCAACGCGTGCGGG
AAAAACAGCAAGTGGGAACAGGCAATGGATCTTATGAGGCAGATGCAGGA
GGAGGGATTTCAACCCGACGTCGCGACGTACAACTCGGTAATTACAGCGT
GCAAGAACGGGGAGCAGTGGGAACTAGCCATGGGTATGTTTCGGGAGATG
CAGAGCGAGGGCATCACGCCCGATATCTTCAGCTACAACTGCGCGATCTC
AGCTTGCGGGGGCAGTGGAAAATGGGAACAGGCTGTGGATCTTTTGAGGA
TGATGCAGGGGGAGGGTGTCACCCCCGATGACATCAGCTATACATCGGCG
ATCAAGGCATGTGGAGCCAGTGGTGAGGCGGAAGAGGCCATGAACCTATT
GGTGGAGATGCAGAGAAAGGGTATCGTGCCAAACTTCCGGAGCTATAACT
ATGCCATAATCGCGTGCGGAAATAGCGAGAAGTGGGAAGAAGCTATGGGG
TTGCTAAGGGAAATGCAGAGAGAGGGTATTTCGACTGATGCCATCAGCTA
CACCTCTACGATCAGAGCGTGTGGAGACTGCGGAAAGTGGCAACAGGCTA
CCAGTTTGTTAAGGGAGATGCAGATGGAAGATATCACACTCGATGCCGTC
TGCTACAATTCTGTGATCAAATCGTGTATACCGGACGGGAGATGGGAACA
GGCATTGGGTCTATTAAGGGAGATGAAGAGGGAAAATATCGACCCAGATG
TCGTGAGCTTCACCTTGGTCATGACGGCGTGTGGACACAGTGGCAAATCG
GAGCAGGCCGTGGGCCTTCTAAGGGAGATGCAGGAGGAGGGTATTCCGCC
TGGTGTACTCGGCTACAGCTCGGCGATTGCAGCTTGTGGAAGCAATGGCC
AGGGGGAACACATCGTGGATCTATTGGCTGAGATGAAGAGGGAAGGTATC
CATCCCGACGCCGTATGCTACAACGCCGCCATCGCGGTCTATAGAGACAC
TGGGAAGTGGGAAATGGTAATGGAACTGTTTTGCCAGATGCAGAGAGACA
GCATCACCCCCGACATCGCGAGCTACACGTCAGCAATCATGGCGTGTAGA
AGAGGTGGGCACTGGGAGCAAGCCTTGACCATTTTGAAGGAAATGAAAAG
GGGAGGCATTACACCTGACGTCGTGAGCTACAACTCGGCAATCATCGCCT
GTGCTGACAGTGAGCAGTGGCAACAGGCCATGGACTTGTTGAGGGAAATG
CACAGAGAGGGTATCACTCCCGATGTCGTAAGCTACAACTCGGCGATTAC
AGCATGTACAAAAAGCGGGAAGTGGGAACATAGTGTGGGCCTGTTGAGGG
AGATGCAGAGGGAGAGCATCACGCCCAATGTAGTAAGCTACAGATCTGCC
ATCATCGCGTGTGACAAAGGCGGGAAACGGGAACACGCCATTGATCTCTT
TGAAGAGATGCAGAGGGACGGTATTGCGCCCGATGTCACGTTGGGCTGAT
GCAGTCGTCAGTAGTAATAGGTTATGAATCATTCACTATATGTGACTATG
GATATCAAGCGGTGTATCTCTAGATGAACCTAAGGAGCAAATACTGCGTA
CTACGTCCTATGGACTTCGTGACCATAAATTGTAGCACCGGTGATCGTGT
AGTATGTGGGGCTTCGAGCAGGGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig3256:2338..5412+

>mRNA_H-paniculata_contig3256.8755.1 ID=mRNA_H-paniculata_contig3256.8755.1|Name=mRNA_H-paniculata_contig3256.8755.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3384bp|location=Sequence derived from alignment at H-paniculata_contig3256:2338..5412+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGGCTATTGAAGGAGGCTGGGTTCACACGGAACTGGGAGGATGCGAG
AGATCTCCTGCTTGGCGCCCTTGCTCGCGATGACGCGGATGCTGTCGTAA
ACGTGTATGTCTACACGGCGGCTGTGAATGTCGCGGCGAAGTGCAGAAAG
TGGAAGCAGGCCCTTGGAATTATGTCTGTTATGAGGCGAAAGGGCGTGCA
GCCGAACGCCGTAACCTACCACTTGGCGATCAACGCGTGCGGGAAAAACA
GCAAGTGGGAACAGGCAATGGATCTTATGAGGCAGATGCAGGAGGAGGGA
TTTCAACCCGACGTCGCGACGTACAACTCGGTAATTACAGCGTGCAAGAA
CGGGGAGCAGTGGGAACTAGCCATGGGTATGTTTCGGGAGATGCAGAGCG
AGGGCATCACGCCCGATATCTTCAGCTACAACTGCGCGATCTCAGCTTGC
GGGGGCAGTGGAAAATGGGAACAGGCTGTGGATCTTTTGAGGATGATGCA
GGGGGAGGGTGTCACCCCCGATGACATCAGCTATACATCGGCGATCAAGG
CATGTGGAGCCAGTGGTGAGGCGGAAGAGGCCATGAACCTATTGGTGGAG
ATGCAGAGAAAGGGTATCGTGCCAAACTTCCGGAGCTATAACTATGCCAT
AATCGCGTGCGGAAATAGCGAGAAGTGGGAAGAAGCTATGGGGTTGCTAA
GGGAAATGCAGAGAGAGGGTATTTCGACTGATGCCATCAGCTACACCTCT
ACGATCAGAGCGTGTGGAGACTGCGGAAAGTGGCAACAGGCTACCAGTTT
GTTAAGGGAGATGCAGATGGAAGATATCACACTCGATGCCGTCTGCTACA
ATTCTGTGATCAAATCGTGTATACCGGACGGGAGATGGGAACAGGCATTG
GGTCTATTAAGGGAGATGAAGAGGGAAAATATCGACCCAGATGTCGTGAG
CTTCACCTTGGTCATGACGGCGTGTGGACACAGTGGCAAATCGGAGCAGG
CCGTGGGCCTTCTAAGGGAGATGCAGGAGGAGGGTATTCCGCCTGGTGTA
CTCGGCTACAGCTCGGCGATTGCAGCTTGTGGAAGCAATGGCCAGGGGGA
ACACATCGTGGATCTATTGGCTGAGATGAAGAGGGAAGGTATCCATCCCG
ACGCCGTATGCTACAACGCCGCCATCGCGGTCTATAGAGACACTGGGAAG
TGGGAAATGGTAATGGAACTGTTTTGCCAGATGCAGAGAGACAGCATCAC
CCCCGACATCGCGAGCTACACGTCAGCAATCATGGCGTGTAGAAGAGGTG
GGCACTGGGAGCAAGCCTTGACCATTTTGAAGGAAATGAAAAGGGGAGGC
ATTACACCTGACGTCGTGAGCTACAACTCGGCAATCATCGCCTGTGCTGA
CAGTGAGCAGTGGCAACAGGCCATGGACTTGTTGAGGGAAATGCACAGAG
AGGGTATCACTCCCGATGTCGTAAGCTACAACTCGGCGATTACAGCATGT
ACAAAAAGCGGGAAGTGGGAACATAGTGTGGGCCTGTTGAGGGAGATGCA
GAGGGAGAGCATCACGCCCAATGTAGTAAGCTACAGATCTGCCATCATCG
CGTGTGACAAAGGCGGGAAACGGGAACACGCCATTGATCTCTTTGAAGAG
ATGCAGAGGGACGGTATTGCGCCCGATGTCACGTTGGGCTGAATGAGGCT
ATTGAAGGAGGCTGGGTTCACACGGAACTGGGAGGATGCGAGAGATCTCC
TGCTTGGCGCCCTTGCTCGCGATGACGCGGATGCTGTCGTAAACGTGTAT
GTCTACACGGCGGCTGTGAATGTCGCGGCGAAGTGCAGAAAGTGGAAGCA
GGCCCTTGGAATTATGTCTGTTATGAGGCGAAAGGGCGTGCAGCCGAACG
CCGTAACCTACCACTTGGCGATCAACGCGTGCGGGAAAAACAGCAAGTGG
GAACAGGCAATGGATCTTATGAGGCAGATGCAGGAGGAGGGATTTCAACC
CGACGTCGCGACGTACAACTCGGTAATTACAGCGTGCAAGAACGGGGAGC
AGTGGGAACTAGCCATGGGTATGTTTCGGGAGATGCAGAGCGAGGGCATC
ACGCCCGATATCTTCAGCTACAACTGCGCGATCTCAGCTTGCGGGGGCAG
TGGAAAATGGGAACAGGCTGTGGATCTTTTGAGGATGATGCAGGGGGAGG
GTGTCACCCCCGATGACATCAGCTATACATCGGCGATCAAGGCATGTGGA
GCCAGTGGTGAGGCGGAAGAGGCCATGAACCTATTGGTGGAGATGCAGAG
AAAGGGTATCGTGCCAAACTTCCGGAGCTATAACTATGCCATAATCGCGT
GCGGAAATAGCGAGAAGTGGGAAGAAGCTATGGGGTTGCTAAGGGAAATG
CAGAGAGAGGGTATTTCGACTGATGCCATCAGCTACACCTCTACGATCAG
AGCGTGTGGAGACTGCGGAAAGTGGCAACAGGCTACCAGTTTGTTAAGGG
AGATGCAGATGGAAGATATCACACTCGATGCCGTCTGCTACAATTCTGTG
ATCAAATCGTGTATACCGGACGGGAGATGGGAACAGGCATTGGGTCTATT
AAGGGAGATGAAGAGGGAAAATATCGACCCAGATGTCGTGAGCTTCACCT
TGGTCATGACGGCGTGTGGACACAGTGGCAAATCGGAGCAGGCCGTGGGC
CTTCTAAGGGAGATGCAGGAGGAGGGTATTCCGCCTGGTGTACTCGGCTA
CAGCTCGGCGATTGCAGCTTGTGGAAGCAATGGCCAGGGGGAACACATCG
TGGATCTATTGGCTGAGATGAAGAGGGAAGGTATCCATCCCGACGCCGTA
TGCTACAACGCCGCCATCGCGGTCTATAGAGACACTGGGAAGTGGGAAAT
GGTAATGGAACTGTTTTGCCAGATGCAGAGAGACAGCATCACCCCCGACA
TCGCGAGCTACACGTCAGCAATCATGGCGTGTAGAAGAGGTGGGCACTGG
GAGCAAGCCTTGACCATTTTGAAGGAAATGAAAAGGGGAGGCATTACACC
TGACGTCGTGAGCTACAACTCGGCAATCATCGCCTGTGCTGACAGTGAGC
AGTGGCAACAGGCCATGGACTTGTTGAGGGAAATGCACAGAGAGGGTATC
ACTCCCGATGTCGTAAGCTACAACTCGGCGATTACAGCATGTACAAAAAG
CGGGAAGTGGGAACATAGTGTGGGCCTGTTGAGGGAGATGCAGAGGGAGA
GCATCACGCCCAATGTAGTAAGCTACAGATCTGCCATCATCGCGTGTGAC
AAAGGCGGGAAACGGGAACACGCCATTGATCTCTTTGAAGAGATGCAGAG
GGACGGTATTGCGCCCGATGTCACGTTGGGCTGA
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