prot_H-paniculata_contig32250.8689.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig32250.8689.1
Unique Nameprot_H-paniculata_contig32250.8689.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length60
Homology
BLAST of mRNA_H-paniculata_contig32250.8689.1 vs. uniprot
Match: A0A8F0FD95_9PHAE (Cytochrome c oxidase subunit 1 n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0FD95_9PHAE)

HSP 1 Score: 112 bits (281), Expect = 9.360e-28
Identity = 50/55 (90.91%), Postives = 53/55 (96.36%), Query Frame = 0
Query:    1 WCSRWLFSTNHKDIGTAYIVFGGVSGIVGTGMSMLIRIQLMSPGNVFLGNNQLYN 55
            WCSRWLFSTNHKDIGTAYI+FGGVSGI+GTGMS+ IRIQLMSPGN FLGNNQLYN
Sbjct:   15 WCSRWLFSTNHKDIGTAYIIFGGVSGIIGTGMSIFIRIQLMSPGNTFLGNNQLYN 69          
BLAST of mRNA_H-paniculata_contig32250.8689.1 vs. uniprot
Match: A0A8D5NJG3_9PHAE (Cytochrome c oxidase subunit 1 (Fragment) n=3 Tax=Chordariaceae TaxID=66220 RepID=A0A8D5NJG3_9PHAE)

HSP 1 Score: 92.0 bits (227), Expect = 1.010e-22
Identity = 42/55 (76.36%), Postives = 49/55 (89.09%), Query Frame = 0
Query:    2 CSRWLFSTNHKDIGTAYIVFGGVSGIVGTGMSMLIRIQLMSPGNVFLG-NNQLYN 55
            CSRWLFSTNHKDIGT Y++FGG SG++GT MS+LIR+QL SPGN FLG N+QLYN
Sbjct:   28 CSRWLFSTNHKDIGTLYLIFGGFSGVLGTAMSVLIRLQLASPGNQFLGGNHQLYN 82          
BLAST of mRNA_H-paniculata_contig32250.8689.1 vs. uniprot
Match: Q2TUB0_DICDH (Cytochrome c oxidase subunit 1 n=32 Tax=Phaeophyceae TaxID=2870 RepID=Q2TUB0_DICDH)

HSP 1 Score: 94.7 bits (234), Expect = 2.570e-21
Identity = 43/56 (76.79%), Postives = 49/56 (87.50%), Query Frame = 0
Query:    1 WCSRWLFSTNHKDIGTAYIVFGGVSGIVGTGMSMLIRIQLMSPGNVFLGNN-QLYN 55
            WCSRWLFSTNHKDIGT Y++FGG SG++GTGMS+LIR+QL SP N FL NN QLYN
Sbjct:   25 WCSRWLFSTNHKDIGTLYLLFGGFSGVLGTGMSVLIRLQLASPSNQFLSNNHQLYN 80          
BLAST of mRNA_H-paniculata_contig32250.8689.1 vs. uniprot
Match: A0A8F0K0Q8_9PHAE (Cytochrome c oxidase subunit 1 n=5 Tax=Laminariales TaxID=2886 RepID=A0A8F0K0Q8_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 9.550e-21
Identity = 41/55 (74.55%), Postives = 50/55 (90.91%), Query Frame = 0
Query:    2 CSRWLFSTNHKDIGTAYIVFGGVSGIVGTGMSMLIRIQLMSPGNVFLG-NNQLYN 55
            CSRWLFSTNHKDIGT Y++FGG SG++GT MS+++R+QLMSPGN FLG N+QLYN
Sbjct:   27 CSRWLFSTNHKDIGTLYLIFGGFSGVLGTAMSVIVRLQLMSPGNQFLGGNHQLYN 81          
BLAST of mRNA_H-paniculata_contig32250.8689.1 vs. uniprot
Match: A0A2Z5XCH3_9PHAE (Cytochrome c oxidase subunit 1 (Fragment) n=16 Tax=Chordariaceae TaxID=66220 RepID=A0A2Z5XCH3_9PHAE)

HSP 1 Score: 90.5 bits (223), Expect = 2.190e-20
Identity = 41/55 (74.55%), Postives = 49/55 (89.09%), Query Frame = 0
Query:    2 CSRWLFSTNHKDIGTAYIVFGGVSGIVGTGMSMLIRIQLMSPGNVFLG-NNQLYN 55
            CSRWLFSTNHKDIG+ Y++FGG SG++GT MS+LIR+QL SPGN FLG N+QLYN
Sbjct:   28 CSRWLFSTNHKDIGSLYLIFGGFSGVLGTAMSVLIRLQLASPGNQFLGGNHQLYN 82          
BLAST of mRNA_H-paniculata_contig32250.8689.1 vs. uniprot
Match: E6ZES6_ECTSI (Cytochrome c oxidase subunit 1 n=691 Tax=Phaeophyceae TaxID=2870 RepID=E6ZES6_ECTSI)

HSP 1 Score: 92.0 bits (227), Expect = 2.430e-20
Identity = 42/55 (76.36%), Postives = 49/55 (89.09%), Query Frame = 0
Query:    2 CSRWLFSTNHKDIGTAYIVFGGVSGIVGTGMSMLIRIQLMSPGNVFLG-NNQLYN 55
            CSRWLFSTNHKDIGT Y++FGG SG++GT MS+LIR+QL SPGN FLG N+QLYN
Sbjct:   28 CSRWLFSTNHKDIGTLYLIFGGFSGVLGTAMSVLIRLQLASPGNQFLGGNHQLYN 82          
BLAST of mRNA_H-paniculata_contig32250.8689.1 vs. uniprot
Match: A0A7S6UA19_9STRA (Cytochrome c oxidase subunit 1 n=5 Tax=Stramenopiles TaxID=33634 RepID=A0A7S6UA19_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 3.200e-20
Identity = 40/56 (71.43%), Postives = 49/56 (87.50%), Query Frame = 0
Query:    1 WCSRWLFSTNHKDIGTAYIVFGGVSGIVGTGMSMLIRIQLMSPGN-VFLGNNQLYN 55
            WCSRWLFSTNHKDIGT Y++FG  SG++GT MS+LIR++L SPGN +F GN+QLYN
Sbjct:   11 WCSRWLFSTNHKDIGTLYLIFGAFSGVLGTAMSVLIRLELASPGNQLFAGNHQLYN 66          
BLAST of mRNA_H-paniculata_contig32250.8689.1 vs. uniprot
Match: A0A5J6Y234_9STRA (Cytochrome c oxidase subunit 1 n=3 Tax=Eustigmataceae TaxID=425071 RepID=A0A5J6Y234_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 6.110e-20
Identity = 39/56 (69.64%), Postives = 49/56 (87.50%), Query Frame = 0
Query:    1 WCSRWLFSTNHKDIGTAYIVFGGVSGIVGTGMSMLIRIQLMSPGNVFL-GNNQLYN 55
            WC+RWL+STNHKDIGT Y++FGG+SG+ GT +S+LIR+QL  PGN FL GN+QLYN
Sbjct:   34 WCTRWLYSTNHKDIGTLYLLFGGISGVAGTALSVLIRLQLSQPGNDFLLGNHQLYN 89          
BLAST of mRNA_H-paniculata_contig32250.8689.1 vs. uniprot
Match: A0A7S1BPC9_9STRA (Cytochrome c oxidase subunit 1 (Fragment) n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BPC9_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 7.710e-20
Identity = 38/56 (67.86%), Postives = 47/56 (83.93%), Query Frame = 0
Query:    1 WCSRWLFSTNHKDIGTAYIVFGGVSGIVGTGMSMLIRIQLMSPGNVFL-GNNQLYN 55
            W SRWLFSTNHKDIGT Y++FG  SG+ GT +S+LIR++LM PGN+ L GN+QLYN
Sbjct:    3 WFSRWLFSTNHKDIGTLYLIFGAFSGVAGTTLSVLIRMELMQPGNLILSGNHQLYN 58          
BLAST of mRNA_H-paniculata_contig32250.8689.1 vs. uniprot
Match: K9ZWM2_9STRA (Cytochrome c oxidase subunit 1 n=17 Tax=Ochrophyta TaxID=2696291 RepID=K9ZWM2_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 1.130e-19
Identity = 41/56 (73.21%), Postives = 48/56 (85.71%), Query Frame = 0
Query:    1 WCSRWLFSTNHKDIGTAYIVFGGVSGIVGTGMSMLIRIQLMSPGNVFL-GNNQLYN 55
            W SRWLFSTNHKDIGT Y++FGGV+GI GT +S+LIR++L  PGN FL GNNQLYN
Sbjct:   17 WSSRWLFSTNHKDIGTLYLIFGGVAGIAGTTLSVLIRLELAQPGNQFLSGNNQLYN 72          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig32250.8689.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8F0FD95_9PHAE9.360e-2890.91Cytochrome c oxidase subunit 1 n=1 Tax=Protohalopt... [more]
A0A8D5NJG3_9PHAE1.010e-2276.36Cytochrome c oxidase subunit 1 (Fragment) n=3 Tax=... [more]
Q2TUB0_DICDH2.570e-2176.79Cytochrome c oxidase subunit 1 n=32 Tax=Phaeophyce... [more]
A0A8F0K0Q8_9PHAE9.550e-2174.55Cytochrome c oxidase subunit 1 n=5 Tax=Laminariale... [more]
A0A2Z5XCH3_9PHAE2.190e-2074.55Cytochrome c oxidase subunit 1 (Fragment) n=16 Tax... [more]
E6ZES6_ECTSI2.430e-2076.36Cytochrome c oxidase subunit 1 n=691 Tax=Phaeophyc... [more]
A0A7S6UA19_9STRA3.200e-2071.43Cytochrome c oxidase subunit 1 n=5 Tax=Stramenopil... [more]
A0A5J6Y234_9STRA6.110e-2069.64Cytochrome c oxidase subunit 1 n=3 Tax=Eustigmatac... [more]
A0A7S1BPC9_9STRA7.710e-2067.86Cytochrome c oxidase subunit 1 (Fragment) n=1 Tax=... [more]
K9ZWM2_9STRA1.130e-1973.21Cytochrome c oxidase subunit 1 n=17 Tax=Ochrophyta... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036927Cytochrome c oxidase-like, subunit I superfamilyGENE3D1.20.210.10coord: 1..59
e-value: 1.5E-15
score: 58.6
IPR036927Cytochrome c oxidase-like, subunit I superfamilySUPERFAMILY81442Cytochrome c oxidase subunit I-likecoord: 2..55
IPR000883Cytochrome c oxidase subunit IPANTHERPTHR10422CYTOCHROME C OXIDASE SUBUNIT 1coord: 3..55
NoneNo IPR availablePANTHERPTHR10422:SF18CYTOCHROME C OXIDASE SUBUNIT 1coord: 3..55
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..14
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 37..60
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 15..36
NoneNo IPR availableTMHMMTMhelixcoord: 15..37

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig32250contigH-paniculata_contig32250:85..264 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig32250.8689.1mRNA_H-paniculata_contig32250.8689.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig32250 85..264 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig32250.8689.1 ID=prot_H-paniculata_contig32250.8689.1|Name=mRNA_H-paniculata_contig32250.8689.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=60bp
WCSRWLFSTNHKDIGTAYIVFGGVSGIVGTGMSMLIRIQLMSPGNVFLGN
NQLYNGAPSH
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036927Cyt_c_oxase-like_su1_sf
IPR000883Cyt_C_Oxase_1