mRNA_H-paniculata_contig32250.8689.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig32250.8689.1
Unique NamemRNA_H-paniculata_contig32250.8689.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig32250.8689.1 vs. uniprot
Match: A0A8F0FD95_9PHAE (Cytochrome c oxidase subunit 1 n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0FD95_9PHAE)

HSP 1 Score: 112 bits (281), Expect = 9.360e-28
Identity = 50/55 (90.91%), Postives = 53/55 (96.36%), Query Frame = 1 
Query:    1 WCSRWLFSTNHKDIGTAYIVFGGVSGIVGTGMSMLIRIQLMSPGNVFLGNNQLYN 165
            WCSRWLFSTNHKDIGTAYI+FGGVSGI+GTGMS+ IRIQLMSPGN FLGNNQLYN
Sbjct:   15 WCSRWLFSTNHKDIGTAYIIFGGVSGIIGTGMSIFIRIQLMSPGNTFLGNNQLYN 69
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BLAST of mRNA_H-paniculata_contig32250.8689.1 vs. uniprot
Match: A0A8D5NJG3_9PHAE (Cytochrome c oxidase subunit 1 (Fragment) n=3 Tax=Chordariaceae TaxID=66220 RepID=A0A8D5NJG3_9PHAE)

HSP 1 Score: 92.0 bits (227), Expect = 1.010e-22
Identity = 42/55 (76.36%), Postives = 49/55 (89.09%), Query Frame = 1 
Query:    4 CSRWLFSTNHKDIGTAYIVFGGVSGIVGTGMSMLIRIQLMSPGNVFLG-NNQLYN 165
            CSRWLFSTNHKDIGT Y++FGG SG++GT MS+LIR+QL SPGN FLG N+QLYN
Sbjct:   28 CSRWLFSTNHKDIGTLYLIFGGFSGVLGTAMSVLIRLQLASPGNQFLGGNHQLYN 82
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BLAST of mRNA_H-paniculata_contig32250.8689.1 vs. uniprot
Match: Q2TUB0_DICDH (Cytochrome c oxidase subunit 1 n=32 Tax=Phaeophyceae TaxID=2870 RepID=Q2TUB0_DICDH)

HSP 1 Score: 94.7 bits (234), Expect = 2.570e-21
Identity = 43/56 (76.79%), Postives = 49/56 (87.50%), Query Frame = 1 
Query:    1 WCSRWLFSTNHKDIGTAYIVFGGVSGIVGTGMSMLIRIQLMSPGNVFLGNN-QLYN 165
            WCSRWLFSTNHKDIGT Y++FGG SG++GTGMS+LIR+QL SP N FL NN QLYN
Sbjct:   25 WCSRWLFSTNHKDIGTLYLLFGGFSGVLGTGMSVLIRLQLASPSNQFLSNNHQLYN 80
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BLAST of mRNA_H-paniculata_contig32250.8689.1 vs. uniprot
Match: A0A8F0K0Q8_9PHAE (Cytochrome c oxidase subunit 1 n=5 Tax=Laminariales TaxID=2886 RepID=A0A8F0K0Q8_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 9.550e-21
Identity = 41/55 (74.55%), Postives = 50/55 (90.91%), Query Frame = 1 
Query:    4 CSRWLFSTNHKDIGTAYIVFGGVSGIVGTGMSMLIRIQLMSPGNVFLG-NNQLYN 165
            CSRWLFSTNHKDIGT Y++FGG SG++GT MS+++R+QLMSPGN FLG N+QLYN
Sbjct:   27 CSRWLFSTNHKDIGTLYLIFGGFSGVLGTAMSVIVRLQLMSPGNQFLGGNHQLYN 81
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BLAST of mRNA_H-paniculata_contig32250.8689.1 vs. uniprot
Match: A0A2Z5XCH3_9PHAE (Cytochrome c oxidase subunit 1 (Fragment) n=16 Tax=Chordariaceae TaxID=66220 RepID=A0A2Z5XCH3_9PHAE)

HSP 1 Score: 90.5 bits (223), Expect = 2.190e-20
Identity = 41/55 (74.55%), Postives = 49/55 (89.09%), Query Frame = 1 
Query:    4 CSRWLFSTNHKDIGTAYIVFGGVSGIVGTGMSMLIRIQLMSPGNVFLG-NNQLYN 165
            CSRWLFSTNHKDIG+ Y++FGG SG++GT MS+LIR+QL SPGN FLG N+QLYN
Sbjct:   28 CSRWLFSTNHKDIGSLYLIFGGFSGVLGTAMSVLIRLQLASPGNQFLGGNHQLYN 82
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BLAST of mRNA_H-paniculata_contig32250.8689.1 vs. uniprot
Match: E6ZES6_ECTSI (Cytochrome c oxidase subunit 1 n=691 Tax=Phaeophyceae TaxID=2870 RepID=E6ZES6_ECTSI)

HSP 1 Score: 92.0 bits (227), Expect = 2.430e-20
Identity = 42/55 (76.36%), Postives = 49/55 (89.09%), Query Frame = 1 
Query:    4 CSRWLFSTNHKDIGTAYIVFGGVSGIVGTGMSMLIRIQLMSPGNVFLG-NNQLYN 165
            CSRWLFSTNHKDIGT Y++FGG SG++GT MS+LIR+QL SPGN FLG N+QLYN
Sbjct:   28 CSRWLFSTNHKDIGTLYLIFGGFSGVLGTAMSVLIRLQLASPGNQFLGGNHQLYN 82
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BLAST of mRNA_H-paniculata_contig32250.8689.1 vs. uniprot
Match: A0A7S6UA19_9STRA (Cytochrome c oxidase subunit 1 n=5 Tax=Stramenopiles TaxID=33634 RepID=A0A7S6UA19_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 3.200e-20
Identity = 40/56 (71.43%), Postives = 49/56 (87.50%), Query Frame = 1 
Query:    1 WCSRWLFSTNHKDIGTAYIVFGGVSGIVGTGMSMLIRIQLMSPGN-VFLGNNQLYN 165
            WCSRWLFSTNHKDIGT Y++FG  SG++GT MS+LIR++L SPGN +F GN+QLYN
Sbjct:   11 WCSRWLFSTNHKDIGTLYLIFGAFSGVLGTAMSVLIRLELASPGNQLFAGNHQLYN 66
[Close]
BLAST of mRNA_H-paniculata_contig32250.8689.1 vs. uniprot
Match: A0A5J6Y234_9STRA (Cytochrome c oxidase subunit 1 n=3 Tax=Eustigmataceae TaxID=425071 RepID=A0A5J6Y234_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 6.110e-20
Identity = 39/56 (69.64%), Postives = 49/56 (87.50%), Query Frame = 1 
Query:    1 WCSRWLFSTNHKDIGTAYIVFGGVSGIVGTGMSMLIRIQLMSPGNVFL-GNNQLYN 165
            WC+RWL+STNHKDIGT Y++FGG+SG+ GT +S+LIR+QL  PGN FL GN+QLYN
Sbjct:   34 WCTRWLYSTNHKDIGTLYLLFGGISGVAGTALSVLIRLQLSQPGNDFLLGNHQLYN 89
[Close]
BLAST of mRNA_H-paniculata_contig32250.8689.1 vs. uniprot
Match: A0A7S1BPC9_9STRA (Cytochrome c oxidase subunit 1 (Fragment) n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BPC9_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 7.710e-20
Identity = 38/56 (67.86%), Postives = 47/56 (83.93%), Query Frame = 1 
Query:    1 WCSRWLFSTNHKDIGTAYIVFGGVSGIVGTGMSMLIRIQLMSPGNVFL-GNNQLYN 165
            W SRWLFSTNHKDIGT Y++FG  SG+ GT +S+LIR++LM PGN+ L GN+QLYN
Sbjct:    3 WFSRWLFSTNHKDIGTLYLIFGAFSGVAGTTLSVLIRMELMQPGNLILSGNHQLYN 58
[Close]
BLAST of mRNA_H-paniculata_contig32250.8689.1 vs. uniprot
Match: K9ZWM2_9STRA (Cytochrome c oxidase subunit 1 n=17 Tax=Ochrophyta TaxID=2696291 RepID=K9ZWM2_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 1.130e-19
Identity = 41/56 (73.21%), Postives = 48/56 (85.71%), Query Frame = 1 
Query:    1 WCSRWLFSTNHKDIGTAYIVFGGVSGIVGTGMSMLIRIQLMSPGNVFL-GNNQLYN 165
            W SRWLFSTNHKDIGT Y++FGGV+GI GT +S+LIR++L  PGN FL GNNQLYN
Sbjct:   17 WSSRWLFSTNHKDIGTLYLIFGGVAGIAGTTLSVLIRLELAQPGNQFLSGNNQLYN 72
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig32250.8689.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8F0FD95_9PHAE9.360e-2890.91Cytochrome c oxidase subunit 1 n=1 Tax=Protohalopt... [more]
A0A8D5NJG3_9PHAE1.010e-2276.36Cytochrome c oxidase subunit 1 (Fragment) n=3 Tax=... [more]
Q2TUB0_DICDH2.570e-2176.79Cytochrome c oxidase subunit 1 n=32 Tax=Phaeophyce... [more]
A0A8F0K0Q8_9PHAE9.550e-2174.55Cytochrome c oxidase subunit 1 n=5 Tax=Laminariale... [more]
A0A2Z5XCH3_9PHAE2.190e-2074.55Cytochrome c oxidase subunit 1 (Fragment) n=16 Tax... [more]
E6ZES6_ECTSI2.430e-2076.36Cytochrome c oxidase subunit 1 n=691 Tax=Phaeophyc... [more]
A0A7S6UA19_9STRA3.200e-2071.43Cytochrome c oxidase subunit 1 n=5 Tax=Stramenopil... [more]
A0A5J6Y234_9STRA6.110e-2069.64Cytochrome c oxidase subunit 1 n=3 Tax=Eustigmatac... [more]
A0A7S1BPC9_9STRA7.710e-2067.86Cytochrome c oxidase subunit 1 (Fragment) n=1 Tax=... [more]
K9ZWM2_9STRA1.130e-1973.21Cytochrome c oxidase subunit 1 n=17 Tax=Ochrophyta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig32250contigH-paniculata_contig32250:85..264 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score76.3
Seed ortholog evalue5.6e-12
Seed eggNOG ortholog218851.Aquca_023_00094.1
Preferred namecox1
KEGG koko:K02256
KEGG TC3.D.4.11,3.D.4.7,3.D.4.8
KEGG Pathwayko00190,ko01100,ko04260,ko04714,ko04932,ko05010,ko05012,ko05016,map00190,map01100,map04260,map04714,map04932,map05010,map05012,map05016
KEGG ModuleM00154
Hectar predicted targeting categorysignal anchor
GOsGO:0006091,GO:0006119,GO:0006123,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008152,GO:0009060,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009987,GO:0015672,GO:0015980,GO:0015988,GO:0015990,GO:0016310,GO:0017144,GO:0019637,GO:0019646,GO:0019693,GO:0022900,GO:0022904,GO:0034220,GO:0034641,GO:0042773,GO:0042775,GO:0044237,GO:0044238,GO:0044281,GO:0045333,GO:0046034,GO:0046483,GO:0051179,GO:0051234,GO:0055085,GO:0055086,GO:0055114,GO:0071704,GO:0072521,GO:0098655,GO:0098660,GO:0098662,GO:1901135,GO:1901360,GO:1901564,GO:1902600
EggNOG free text desc.Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
EggNOG OGs37QZZ@33090,3GEEJ@35493,COG0843@1,KOG4769@2759
EC1.9.3.1
COG Functional cat.C
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03029
Exons1
Model size180
Cds size180
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929996.0881925-CDS-H-paniculata_contig32250:84..2641622929996.0881925-CDS-H-paniculata_contig32250:84..264Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32250 85..264 -
1691481103.2239485-CDS-H-paniculata_contig32250:84..2641691481103.2239485-CDS-H-paniculata_contig32250:84..264Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32250 85..264 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig32250.8689.1prot_H-paniculata_contig32250.8689.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig32250 85..264 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig32250.8689.1

>prot_H-paniculata_contig32250.8689.1 ID=prot_H-paniculata_contig32250.8689.1|Name=mRNA_H-paniculata_contig32250.8689.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=60bp
WCSRWLFSTNHKDIGTAYIVFGGVSGIVGTGMSMLIRIQLMSPGNVFLGN
NQLYNGAPSH
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mRNA from alignment at H-paniculata_contig32250:85..264-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig32250.8689.1 ID=mRNA_H-paniculata_contig32250.8689.1|Name=mRNA_H-paniculata_contig32250.8689.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=180bp|location=Sequence derived from alignment at H-paniculata_contig32250:85..264- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGGTGCTCGAGATGGTTGTTTTCGACTAATCATAAAGATATTGGGACAGC
TTACATTGTTTTTGGGGGTGTCTCTGGTATTGTTGGAACTGGTATGTCTA
TGCTTATTCGTATTCAATTAATGTCACCTGGAAATGTTTTTTTAGGTAAT
AATCAATTATATAACGGTGCGCCGTCTCAC
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Coding sequence (CDS) from alignment at H-paniculata_contig32250:85..264-

>mRNA_H-paniculata_contig32250.8689.1 ID=mRNA_H-paniculata_contig32250.8689.1|Name=mRNA_H-paniculata_contig32250.8689.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=360bp|location=Sequence derived from alignment at H-paniculata_contig32250:85..264- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGGTGCTCGAGATGGTTGTTTTCGACTAATCATAAAGATATTGGGACAGC
TTACATTGTTTTTGGGGGTGTCTCTGGTATTGTTGGAACTGGTATGTCTA
TGCTTATTCGTATTCAATTAATGTCACCTGGAAATGTTTTTTTAGGTAAT
AATCAATTATATAACGGTGCGCCGTCTCACTGGTGCTCGAGATGGTTGTT
TTCGACTAATCATAAAGATATTGGGACAGCTTACATTGTTTTTGGGGGTG
TCTCTGGTATTGTTGGAACTGGTATGTCTATGCTTATTCGTATTCAATTA
ATGTCACCTGGAAATGTTTTTTTAGGTAATAATCAATTATATAACGGTGC
GCCGTCTCAC
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