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Homology
BLAST of mRNA_H-paniculata_contig3211.8644.1 vs. uniprot
Match: D7FS85_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS85_ECTSI) HSP 1 Score: 139 bits (349), Expect = 3.930e-30 Identity = 107/181 (59.12%), Postives = 120/181 (66.30%), Query Frame = 2
Query: 1064 VVAAGSGVGTDG-ARLADLCREDKAKVARLMQDLVKLRGEKDGFDARLARLRGQNEDIVKEMASLKVKFGQSMQLLRKYQSIVQEGEAAAGGXXXXXXXXXXXXXXXXXXXXXXXXXXXX------ADIRLLREALHAAEESAQRAEKEAAEERARRVMVDAELWNVKRDAEGLRRQFQTH 1585
V AA GV DG ARLA+LC+EDK KVARLMQDLVKLR EK+G R RLR QNE IVK+MA LK KFGQSMQLLRKYQSIVQEG AA G XXXXXX XXXXXXXX A+I+ LRE L AEES ++AE EAA +R+ R + EL + A+ LRRQ H
Sbjct: 223 VAAAAGGVAVDGGARLAELCKEDKTKVARLMQDLVKLRQEKEGQKTRFERLRAQNESIVKQMAGLKDKFGQSMQLLRKYQSIVQEGGAADEGGGVGVRGKGXXXXXXKRLEKXXXXXXXXXXXXXXAEIQALRETLRLAEESTRKAEAEAAAQRSGRTAMAEELRQARGQADELRRQLDHH 403
BLAST of mRNA_H-paniculata_contig3211.8644.1 vs. uniprot
Match: A0A6H5K9R0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9R0_9PHAE) HSP 1 Score: 137 bits (344), Expect = 1.820e-29 Identity = 100/177 (56.50%), Postives = 112/177 (63.28%), Query Frame = 2
Query: 1064 VVAAGSGVGTDG-ARLADLCREDKAKVARLMQDLVKLRGEKDGFDARLARLRGQNEDIVKEMASLKVKFGQSMQLLRKYQSIVQEGEAAAGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXA-DIRLLREALHAAE-ESAQRAEKEAAEERARRVMVDAELWNVKRDAEGLRRQFQTH 1585
V AA GV DG ARLA+LC+EDK KVARLMQDLVKLR EK+G R RLR QNE IVKEMA LKVKFGQSMQLLRKYQSIVQEG A GGXX XXXX A +I+ LRE A ESA++AE EAA +R+ R + EL + A+ LRRQ H
Sbjct: 312 VAAAAGGVAIDGGARLAELCQEDKTKVARLMQDLVKLRQEKEGQKTRFERLRAQNESIVKEMAGLKVKFGQSMQLLRKYQSIVQEGGAPGGGXXVGVRGKXXXXGACKRLEKQEAAATAAAAEIQALREXPSAKRRESARKAEAEAAVQRSDRTAMAEELRQARGQADELRRQLDHH 488
BLAST of mRNA_H-paniculata_contig3211.8644.1 vs. uniprot
Match: A0A7S2SSJ5_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SSJ5_9STRA) HSP 1 Score: 66.6 bits (161), Expect = 7.260e-8 Identity = 40/92 (43.48%), Postives = 57/92 (61.96%), Query Frame = 2
Query: 1076 GSGVGTDG------ARLADLCREDKAKVARLMQDLVKLRGEKDG-----------FDARLARLRGQNEDIVKEMASLKVKFGQSMQLLRKYQ 1300
GSG DG ARL DLC DK++VARL+ L+++ E D F++R+ RLR QN++IV EMA+L+ KFGQ++ L ++YQ
Sbjct: 42 GSGGAVDGRAKTKTARLTDLCAADKSRVARLIDQLLRVTTEHDKAVEDWGRERATFESRIQRLRKQNDEIVGEMAALRKKFGQTLTLAQQYQ 133
BLAST of mRNA_H-paniculata_contig3211.8644.1 vs. uniprot
Match: A0A835Z7B7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7B7_9STRA) HSP 1 Score: 62.0 bits (149), Expect = 2.480e-6 Identity = 34/68 (50.00%), Postives = 44/68 (64.71%), Query Frame = 2
Query: 1100 ARLADLCREDKAKVARLMQDLVKLRGEKDGFDARLARLRGQNEDIVKEMASLKVKFGQSMQLLRKYQS 1303
ARL DLC DKAKVA+LMQ+L + E RL RLR QN +IV E A + + Q++ LL+KYQ+
Sbjct: 44 ARLVDLCPSDKAKVAKLMQELSAAQAEAAARAHRLERLRAQNAEIVAETADTRSRLTQAVLLLKKYQA 111
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-05_004990.1 |
| Exons | 7 |
| Model size | 2142 |
| Cds size | 1641 |
| Stop | 0 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig3211.8644.1 >prot_H-paniculata_contig3211.8644.1 ID=prot_H-paniculata_contig3211.8644.1|Name=mRNA_H-paniculata_contig3211.8644.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=547bp
MTGSTAREDIAFARWETLGPPTLPANPITTNTASTATVDNEEIHVLRAAP
GAGAGPPYVLGRVPLAPSPQPSPFVSKKDDIYTTVSEKRAPPSTATLPAV
FPSTAEAPGAFRVTSLGSGVYDRGVASADSELERLAGQAEQAAAAREGPA
PRQDPKKVAKGGGSNTTLAGGSSGFATGSGTIHERDESVVAAGSGVGTDG
ARLADLCREDKAKVARLMQDLVKLRGEKDGFDARLARLRGQNEDIVKEMA
SLKVKFGQSMQLLRKYQSIVQEGEAAAGGGLATPSGATAASSNSAATAAA
AAETAAAADIRLLREALHAAEESAQRAEKEAAEERARRVMVDAELWNVKR
DAEGLRRQFQTHINSSGGKTVSECSQEGAATASDGLLRATSVPAPAPSVA
PLPPTLRHYPEPQSSPARDNHHETAESGVRAPIIAQPAPAFTNYPAVIPA
ASGASSTAGTGTRLGDRRADSTPEVLHTDSILATGRKEALPAVAVVGIGS
SKVSSGENRRLSLGSDEEQIGVSSSGGFSDTQDGKGLPRRTEVEEAG back to topmRNA from alignment at H-paniculata_contig3211:11883..15801- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig3211.8644.1 ID=mRNA_H-paniculata_contig3211.8644.1|Name=mRNA_H-paniculata_contig3211.8644.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3919bp|location=Sequence derived from alignment at H-paniculata_contig3211:11883..15801- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGAGACTGTAGTTGTACGTGTAAGGGGAGGACTCCAGTGCTGTAGCACG
TCAGCTGAAGAGGATAGTCGGATGACACGCATATGGTGGGAAACGATTCT
CTGTAAAAATTAGGCGTCAACTCCTCCTCGATCTTTTAGTTTCGATATTC
TTGCATCAGTACCGTCTGTATTGTACATATCCTCAGGGCAGGTTAAATTT
CTCCAACAGACACAGAGACAGTGCTTGCTATACCTCGGGAAGGCGCCCAC
AACCCTGCGAAGGGCAGAATACATCCTAGTGTATGGCGCTGATTCACCGC
TTAGCACTATATCCAACACGACTGCAAAGCTATCTACGCGCTCTTGTGCG
GAAGACGTGCTGGCGCGAGAGTGGCGGCTTCTGGAGTAATACTTGCAATA
CTAGACATCTTAATATACCGCACGAGGCAAGCCCTGAGGTGAGATACATA
TCAATATCAACAGCGGGGATAATGTCGGGATACTGATACCGCCTATTTAC
ACCACGCTGGAACATGCGGCGAATATCCGGAATCCACGTATATGTGCATT
CGTTGTTCAACCCACGTATAGATTTTGAAGATTTTATAGAACATCAAGTA
GAGTAGAGAACAATACAGTACCGGAGTAAATTTACAAGAATCCAATTACT
CTTTCCATCGCTTCGGAAGCGTCCTTGCCGTGGTTTCGGCGCCTACACCG
ACACCGCTCCATTCTCATTCATAAAAACCCAGCTTTCCCACAATACACTC
ATTGGATACTCCTCCGTCTCCTCCATACATTCACTGTGCTTCAACCATGC
AGACACGAGAGTACCATCCCTCGCAGGTCATCGTCGTAGCAAAAACCCGC
CTCCTGCCAATCAATGACGGGATCGACGGCACGAGAAGACATCGCCTTCG
CCAGATGGGAAACCCTCGGCCCCCCAACCCTCCCCGCCAACCCCATCACC
ACCAACACCGCTTCCACCGCCACAGTAGATAACGAAGAGATACATGTCCT
GAGAGCCGCTCCGGGCGCCGGCGCCGGGCCACCATATGTACTGGGTAGGG
TACCACTGGCGCCATCACCACAACCCTCGCCTTTTGTTTCGAAGAAAGAC
GATATATACACGACGGTCTCCGAGAAACGAGCACCGCCATCCACGGCAAC
ACTTCCCGCAGTCTTCCCCTCAACCGCTGAAGCACCAGGTGCGTTCCGTG
TCACCAGCCTTGGCAGTGGTGTCTATGATCGTGGCGTCGCCAGCGCAGAC
TCGGAGCTGGAGCGGCTCGCTGGCCAGGCCGAACAAGCGGCAGCAGCTAG
AGAAGGGCCAGCGCCACGGCAAGACCCCAAAAAGGTAAGCTCGTCTTCGC
CTGGCGTTAGAATCGAAGGGGGTGTCTTTATCCATAGCTAACGGTAAACG
GCGGCAGGGAGTGACCGCCGCCCCTAGGTGCATAACGTGAGAAAGATCTC
AGGTCGCGGTAAGCTTGTCCGCCGCTCTTTCGATACCGCAGGTTGCCAAG
GGTGGTGGCAGCAATACCACGCTGGCGGGTGGTAGCTCTGGGTTTGCTAC
GGGGAGTGGGACGATACACGAGCGCGATGAGAGCGTTGTGGCGGCAGGCA
GCGGAGTTGGTACTGACGGGGCGCGGCTTGCCGACCTGTGTAGGGAGGAC
AAGGCAAAAGTGGCTCGGCTCATGCAGGCAAGTGGTGGCAGCTCATGTGT
GGTACAGGCCAGGGAAATGCGCATTGTCGTACCTGCTTTTTGATCGGGTG
GCCGGGTGGAATGCGCAACAAGACAAAAATAAATAGCCAATTCACGGTCT
ACCCGGTCGCCACCTGGATCAAACATTGTTGGGGGGTCACTGGCCTATAG
TTCACTCCTCAGCTTCAAAAAAGATTATTGCACGTGAACACCATGTGCGG
TTCACGTTGGCTGTGCATGTGTACTTACAAGACACGTTGTACGTCTCTCC
GTACCGAGTTCAGGACCTCGTAAAGCTCAGAGGAGAAAAGGATGGGTTCG
ACGCTCGATTGGCGCGCCTCAGGGGTCAGAACGAAGACATCGTGAAGGAA
ATGGCCTCTCTCAAAGTCAAGTTTGGCCAAAGCATGCAGCTGCTTAGGAA
ATACCAGGTATTATTGAAAACGCCATAATCCCAGTCCCTATTCCGCGTTA
TCGCCGCCCACCGATTGAGGCCGTGGAGAACACGTGCTGCTATTTTGCAA
CTCCATACCATAGTTTGCTGATTTGCCAGGAAAATCGTGTTGCATGTTGG
AATGAAGCATGGTTCCCCTGACATCTTCCTATTTGCGTCCTCTGCCTCGC
TATCAGAGCATTGTACAAGAGGGTGAAGCGGCCGCAGGAGGCGGGCTGGC
CACTCCAAGTGGCGCAACTGCCGCCAGTTCAAATTCTGCGGCGACAGCGG
CGGCCGCGGCGGAAACCGCGGCTGCAGCGGATATTCGTTTGCTGCGCGAG
GCTCTTCACGCAGCCGAAGAGGTAACTTTCCCTGTTGCTCGTTATATTGG
CTCCTTACTGGCGTACCTTGGTTAACGGGTATTCTACCGCGTGGTCGACT
ATTTGCAGGTGACGCCTGACTCTGTCACTGCTACCTCAGCTCCTGCGTAC
CTAGGTCGCTCTATAGTTGATACAATTCAGAACACCGCTAGTGCTTGCTT
CTTTTCCCGTCGTTTGACTACGCCACTTTTTGGCGGGTCCGAAATGGTTC
CTATGATTTCTGCGGTCAAGTCCGCCCAGAGGGCGGAAAAGGAAGCAGCG
GAGGAGCGAGCTCGGCGTGTGATGGTTGATGCAGAGCTCTGGAACGTGAA
ACGGGACGCAGAGGTGACTGGATAGATACCTCCTTATAGTGTTGTATTTC
GTCATGGTTCGCCTTCAGATTTTTCTTTTCTCCATTTTCCTCTTTAGTGT
TTTTCAGATCGGCCATCGCAACAACAACGGAGAATAGCATAGCCGGTGCG
AAGGAGAGTCTGATGGTAGAAGAATTGGTCGTTTGTACTCTTACTTGAAT
TTTAAAGCATGCATTCTACAGACCATGGATGTACTGCTTTTCTCTATTTA
TACATAAATCGGCTGAATTCTAACGATGGTCGCAAGGCTGAACTTCGACT
TCACTCTACGACTCAGTTTCTGTACCAAGCCTCAGGTTTCAGCACTTTTG
CGGCTGTTGGTCCGCTTACAAATCCATTGCCCCCCTTCCGAAAACCGAAG
GTGGCCTGGGATCTACAATCAGTCGTGTATGTCGTAAAATTATCGGAAAC
TGGCCATGGCTTGCCGTCCTTCGTATCACCTCCACCTCAGTTCTGTCTCT
TTCCCTAACGATCTGGCTGATACTGCCCCCTCAAAAGGGCCTGCGGCGTC
AATTCCAAACCCACATCAATTCTTCAGGAGGCAAAACCGTCAGCGAGTGC
AGCCAGGAGGGGGCCGCTACCGCATCCGACGGCCTACTGCGTGCGACAAG
CGTGCCCGCGCCGGCTCCTTCAGTCGCGCCTTTACCTCCTACCCTGCGTC
ATTACCCAGAACCGCAATCATCGCCTGCAAGGGATAACCATCACGAGACG
GCGGAGTCTGGGGTTCGCGCTCCAATTATTGCCCAACCGGCCCCCGCTTT
CACCAACTACCCCGCCGTCATCCCCGCTGCTTCTGGCGCAAGCTCGACTG
CCGGTACTGGAACTAGGCTGGGCGACCGGCGCGCGGATTCAACGCCGGAA
GTTCTTCATACTGATTCCATTTTGGCGACCGGTCGAAAGGAGGCGCTCCC
TGCGGTCGCGGTGGTTGGCATTGGTAGTTCGAAGGTGTCATCTGGCGAGA
ATAGAAGGTTGTCCTTGGGGAGTGACGAGGAGCAGATCGGGGTTTCGAGT
AGCGGTGGCTTCAGTGATACACAGGATGGGAAGGGGCTACCCCGGCGTAC
AGAAGTGGAGGAGGCTGGA back to topCoding sequence (CDS) from alignment at H-paniculata_contig3211:11883..15801- >mRNA_H-paniculata_contig3211.8644.1 ID=mRNA_H-paniculata_contig3211.8644.1|Name=mRNA_H-paniculata_contig3211.8644.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3282bp|location=Sequence derived from alignment at H-paniculata_contig3211:11883..15801- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACGGGATCGACGGCACGAGAAGACATCGCCTTCGCCAGATGGGAAAC
CCTCGGCCCCCCAACCCTCCCCGCCAACCCCATCACCACCAACACCGCTT
CCACCGCCACAGTAGATAACGAAGAGATACATGTCCTGAGAGCCGCTCCG
GGCGCCGGCGCCGGGCCACCATATGTACTGGGTAGGGTACCACTGGCGCC
ATCACCACAACCCTCGCCTTTTGTTTCGAAGAAAGACGATATATACACGA
CGGTCTCCGAGAAACGAGCACCGCCATCCACGGCAACACTTCCCGCAGTC
TTCCCCTCAACCGCTGAAGCACCAGGTGCGTTCCGTGTCACCAGCCTTGG
CAGTGGTGTCTATGATCGTGGCGTCGCCAGCGCAGACTCGGAGCTGGAGC
GGCTCGCTGGCCAGGCCGAACAAGCGGCAGCAGCTAGAGAAGGGCCAGCG
CCACGGCAAGACCCCAAAAAGATGACGGGATCGACGGCACGAGAAGACAT
CGCCTTCGCCAGATGGGAAACCCTCGGCCCCCCAACCCTCCCCGCCAACC
CCATCACCACCAACACCGCTTCCACCGCCACAGTAGATAACGAAGAGATA
CATGTCCTGAGAGCCGCTCCGGGCGCCGGCGCCGGGCCACCATATGTACT
GGGTAGGGTACCACTGGCGCCATCACCACAACCCTCGCCTTTTGTTTCGA
AGAAAGACGATATATACACGACGGTCTCCGAGAAACGAGCACCGCCATCC
ACGGCAACACTTCCCGCAGTCTTCCCCTCAACCGCTGAAGCACCAGGTGC
GTTCCGTGTCACCAGCCTTGGCAGTGGTGTCTATGATCGTGGCGTCGCCA
GCGCAGACTCGGAGCTGGAGCGGCTCGCTGGCCAGGCCGAACAAGCGGCA
GCAGCTAGAGAAGGGCCAGCGCCACGGCAAGACCCCAAAAAGGTTGCCAA
GGGTGGTGGCAGCAATACCACGCTGGCGGGTGGTAGCTCTGGGTTTGCTA
CGGGGAGTGGGACGATACACGAGCGCGATGAGAGCGTTGTGGCGGCAGGC
AGCGGAGTTGGTACTGACGGGGCGCGGCTTGCCGACCTGTGTAGGGAGGA
CAAGGCAAAAGTGGCTCGGCTCATGCAGGTTGCCAAGGGTGGTGGCAGCA
ATACCACGCTGGCGGGTGGTAGCTCTGGGTTTGCTACGGGGAGTGGGACG
ATACACGAGCGCGATGAGAGCGTTGTGGCGGCAGGCAGCGGAGTTGGTAC
TGACGGGGCGCGGCTTGCCGACCTGTGTAGGGAGGACAAGGCAAAAGTGG
CTCGGCTCATGCAGGACCTCGTAAAGCTCAGAGGAGAAAAGGATGGGTTC
GACGCTCGATTGGCGCGCCTCAGGGGTCAGAACGAAGACATCGTGAAGGA
AATGGCCTCTCTCAAAGTCAAGTTTGGCCAAAGCATGCAGCTGCTTAGGA
AATACCAGGACCTCGTAAAGCTCAGAGGAGAAAAGGATGGGTTCGACGCT
CGATTGGCGCGCCTCAGGGGTCAGAACGAAGACATCGTGAAGGAAATGGC
CTCTCTCAAAGTCAAGTTTGGCCAAAGCATGCAGCTGCTTAGGAAATACC
AGAGCATTGTACAAGAGGGTGAAGCGGCCGCAGGAGGCGGGCTGGCCACT
CCAAGTGGCGCAACTGCCGCCAGTTCAAATTCTGCGGCGACAGCGGCGGC
CGCGGCGGAAACCGCGGCTGCAGCGGATATTCGTTTGCTGCGCGAGGCTC
TTCACGCAGCCGAAGAGAGCATTGTACAAGAGGGTGAAGCGGCCGCAGGA
GGCGGGCTGGCCACTCCAAGTGGCGCAACTGCCGCCAGTTCAAATTCTGC
GGCGACAGCGGCGGCCGCGGCGGAAACCGCGGCTGCAGCGGATATTCGTT
TGCTGCGCGAGGCTCTTCACGCAGCCGAAGAGTCCGCCCAGAGGGCGGAA
AAGGAAGCAGCGGAGGAGCGAGCTCGGCGTGTGATGGTTGATGCAGAGCT
CTGGAACGTGAAACGGGACGCAGAGTCCGCCCAGAGGGCGGAAAAGGAAG
CAGCGGAGGAGCGAGCTCGGCGTGTGATGGTTGATGCAGAGCTCTGGAAC
GTGAAACGGGACGCAGAGGGCCTGCGGCGTCAATTCCAAACCCACATCAA
TTCTTCAGGAGGCAAAACCGTCAGCGAGTGCAGCCAGGAGGGGGCCGCTA
CCGCATCCGACGGCCTACTGCGTGCGACAAGCGTGCCCGCGCCGGCTCCT
TCAGTCGCGCCTTTACCTCCTACCCTGCGTCATTACCCAGAACCGCAATC
ATCGCCTGCAAGGGATAACCATCACGAGACGGCGGAGTCTGGGGTTCGCG
CTCCAATTATTGCCCAACCGGCCCCCGCTTTCACCAACTACCCCGCCGTC
ATCCCCGCTGCTTCTGGCGCAAGCTCGACTGCCGGTACTGGAACTAGGCT
GGGCGACCGGCGCGCGGATTCAACGCCGGAAGTTCTTCATACTGATTCCA
TTTTGGCGACCGGTCGAAAGGAGGCGCTCCCTGCGGTCGCGGTGGTTGGC
ATTGGTAGTTCGAAGGTGTCATCTGGCGAGAATAGAAGGTTGTCCTTGGG
GAGTGACGAGGAGCAGATCGGGGTTTCGAGTAGCGGTGGCTTCAGTGATA
CACAGGATGGGAAGGGGCTACCCCGGCGTACAGAAGTGGAGGAGGCTGGA
GGCCTGCGGCGTCAATTCCAAACCCACATCAATTCTTCAGGAGGCAAAAC
CGTCAGCGAGTGCAGCCAGGAGGGGGCCGCTACCGCATCCGACGGCCTAC
TGCGTGCGACAAGCGTGCCCGCGCCGGCTCCTTCAGTCGCGCCTTTACCT
CCTACCCTGCGTCATTACCCAGAACCGCAATCATCGCCTGCAAGGGATAA
CCATCACGAGACGGCGGAGTCTGGGGTTCGCGCTCCAATTATTGCCCAAC
CGGCCCCCGCTTTCACCAACTACCCCGCCGTCATCCCCGCTGCTTCTGGC
GCAAGCTCGACTGCCGGTACTGGAACTAGGCTGGGCGACCGGCGCGCGGA
TTCAACGCCGGAAGTTCTTCATACTGATTCCATTTTGGCGACCGGTCGAA
AGGAGGCGCTCCCTGCGGTCGCGGTGGTTGGCATTGGTAGTTCGAAGGTG
TCATCTGGCGAGAATAGAAGGTTGTCCTTGGGGAGTGACGAGGAGCAGAT
CGGGGTTTCGAGTAGCGGTGGCTTCAGTGATACACAGGATGGGAAGGGGC
TACCCCGGCGTACAGAAGTGGAGGAGGCTGGA back to top
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