mRNA_H-paniculata_contig321.8640.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig321.8640.1 vs. uniprot
Match: D8LMQ4_ECTSI (Nucleotide binding protein, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMQ4_ECTSI) HSP 1 Score: 223 bits (567), Expect = 8.090e-55 Identity = 182/495 (36.77%), Postives = 220/495 (44.44%), Query Frame = 3
Query: 1092 PIPT-LWRVSEQWKGHKARVTSLWPAVCRA----------STSSGEGDNMLFDALPSH-----TAALDTSRLRTCCHGNSNRHG-FNGDLVSAAADGTVGWWAW----------------PRDHCCGSSSAARKEQ--RTPPVRILCRAGPAATITSFVIDDTHGRIISC---------------------SERRNNDRLSSPSNPRTATGQDMGDRTYHEWNAAG-ASVFCGDTKGNIYCFLNPIEEHNDADGTSMESPTHGGKDGRRETDLE--IKPRA-AEAIAPCLVLRRQHGKDQISRLALMGDCLLSAGHDGHVNHYLVSYHSHDTTDEAPTDPLPR-----------LVLTLVTSYPTSPVNVISDLWVGGYCNGGGYRPD--CSGGRQSKDSSPQRTSRDALRIVVAGRSGSKFMSVWDVTEGRQLLELECGDRHLAQALLLSWPSALSARSRTPVVPGDSFSSGRPRIHTSFRSRGCRGAAVTLLP 2357
P PT WRV W+GH++RVT++W AV A ST G TAALDTSRLRT +S G F+G LVSA ADGTV WW W R+H G S R P +R++C+A P A +TS IDD ER P+ P +G E AA A VFCGDTKGNI CFL +E ++ SP G G E E ++PRA + +APCLVL+RQHGKDQISR+AL G CL SAGHDG VNHY++SY + P P + D ++ +GGG D G+ + + +R+ VAGRSGS MSVWD+TEGRQLLELECGDRHLAQ L LSWP RS T G P FR R +A T P
Sbjct: 910 PFPTGPWRVGAAWRGHRSRVTAIW-AVGDADHDGGGSRSPSTPLGXXXXXXXXXXXXRCQFFFTAALDTSRLRT----SSGAGGIFSGALVSAGADGTVAWWEWGGEGGRADEAGRSGVDEREHAAGGSEPRSGGMGIRPPKLRMVCQAEPGAAVTSVAIDDRXXXXXXXXXXXXXXXXXXXXXXXXXXDREERVVGKAELEPNTPDDDARGKVGRTPPAEVAAAARAVVFCGDTKGNIRCFLEEDKEEDEP------SPCVGLDGGGGEAAYERGVEPRALGQGVAPCLVLKRQHGKDQISRMALWGGCLFSAGHDGQVNHYVISYSYPLPSSPDPVSPSSERRRGTASGGCGVAXXXXXXXXXXXXXXXXDAFLEIQGDGGGSCGDGVAHNGKGDRGARSVAGVGGGVRLAVAGRSGSSRMSVWDITEGRQLLELECGDRHLAQDLFLSWP-----RSAT----------GFPGSAAPFRRRADHVSATTAAP 1378
BLAST of mRNA_H-paniculata_contig321.8640.1 vs. uniprot
Match: A0A6H5KGL5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGL5_9PHAE) HSP 1 Score: 148 bits (374), Expect = 5.720e-32 Identity = 174/614 (28.34%), Postives = 220/614 (35.83%), Query Frame = 3
Query: 1107 WRVSEQWKGHKARVTSLWPAVCRA--------STSS-----GEGDNMLFDALPSHTAALDTSRLRTC---CHGNSNRHGFNGDLVSAAADGTVGWWAW----------------PRDHCCGSSSAARKEQ--RTPPVRILCRAGPAATITSFVIDDTHGRIISCSERRNNDRLSSPSNPRTATGQDMGDRTYHEWN--------------------AAGASVFCGDTKGNIYCFLNPIEEHNDADGTSMESPTHGGKDGRR------ETDLE--IKPRA-AEAIAPCLVLRRQHGKDQIS------------------------RLALMGDCLLSAGHDGHVNHYLVSYHSHDTTDEAPTD--------------------------------------------------------------------------------------------PLPRLVLTLVTSYPTSPVNVISDLWV----GGYCNGGGYRPDCSGGRQSKDSSPQRTSRDALRIVVAGRSGSKFMSVWDVTEGRQLLE--------------LECGDRHLAQALLLSWPSALSARSRTPVVPGDSFSSGRPRIHTSFRSRGCRGAAVTLLP 2357
WRV W+GH++RVT++W AV A STS+ G G TAALDTSRL T LVS +DGTV WW W R+H G S R P +R++CRA P A +TS IDD ++ C R L ++ R + +G + E N AA A VFCGDTKGNI CFL E P G G E LE +P A + +APCLVL+RQHGKDQ++ R A G C ++A V S D D+A + ++L++VT+Y T+PV +SDLWV GG C G G + GGR ++ + +R+ VAGRSGS MSVWD+ EGRQLLE LECGDR+LAQ L L WP RS T G P FR R +A T +P
Sbjct: 905 WRVGAAWRGHRSRVTAIW-AVGDADHDSGGSRSTSTPIGREGAGXXXXGRCQGFFTAALDTSRLHTSPXXXXXXXXXXXXXXXLVSVGSDGTVAWWEWGGEGGRADEAGRSEVDEREHAAGGSEPRSGGMGIRPPKLRMVCRAEPGAAVTSVAIDDRRRQL--CRRRPRPSSLRKKNSSRRGRDESVGGKAKLEPNTSDNDARGKIGKTPPAEVAAAARAVVFCGDTKGNIRCFL----EEXXXXXXXQPLPCVGLDGGXXXXXXXGEAALERGAEPSALGQGVAPCLVLKRQHGKDQVNHYFISYCYPLPSSPDPVSPSSERRRCAASGGCGVAASSTPPV-----SAVGTDDGDDASLEIQRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHFIDSCXXXXXXXXXXXXXXXXXXXVMLSIVTTYATAPVTSVSDLWVTSDGGGSC-GDGVARNGQGGRGARIGAGVG---GGVRLAVAGRSGSSRMSVWDIAEGRQLLEVWRVVQVKIVGGFELECGDRNLAQDLFLVWP-----RSAT----------GFPGSDAPFRRRADHVSATTAVP 1487
BLAST of mRNA_H-paniculata_contig321.8640.1 vs. uniprot
Match: D7FVQ9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVQ9_ECTSI) HSP 1 Score: 103 bits (257), Expect = 3.730e-21 Identity = 76/171 (44.44%), Postives = 89/171 (52.05%), Query Frame = 3
Query: 3837 GGRPVLCVVHTRLTTIQLPRTSKPPPTSELKTYLSAVAADLVVTGDTGGTVTVWQLVAAARDSSVVHDGSITAGGEEHRSRGCGQKAHAEVVDGFVYRGPAGRRRGAA-----EGAEGENGACLVPLLEYRAHQSGVFCAAVQVAAVGER--LLIVTGGDDQAVCVAEVEV 4328
G RPVLC+ H R+ P T + + + DL+ TGDTGGTVTVWQ + GE FVYRGPAGRRRG A EGA LVP+LEYRAHQ GV C AV V A GER +++VTGGDDQA+CVAE+EV
Sbjct: 4 GKRPVLCLAHARVW---------PSATHQQQHEV----LDLIATGDTGGTVTVWQFYGXXXXXXXXXSTLPSDHGE------------------FVYRGPAGRRRGGAARTGPEGAAAPPCHALVPVLEYRAHQMGVLCMAVHVPA-GERGRVVVVTGGDDQAICVAELEV 142
BLAST of mRNA_H-paniculata_contig321.8640.1 vs. uniprot
Match: A0A6H5KMH9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMH9_9PHAE) HSP 1 Score: 77.4 bits (189), Expect = 1.130e-10 Identity = 110/463 (23.76%), Postives = 153/463 (33.05%), Query Frame = 3
Query: 4227 GVFCAAVQVAAVGE--RLLIVTGGDDQAVCVAEVEVLWPEDIFDSSDSDKDSRNAGVEPKFRSGGC--------DRLVTARLIEAAPEIIKEASGSAIKGIALLP---------PIRQARPADTASTT--SPSAAAATAXXXXXXXXSPRAPDTTLGADERSAGIPRSTTMQGSAQLVATIFTLSRDQRLSRWELSEHPQPSGDEQLAVGSGDFYPCRGNFEKTFLKSRGGRGKLEQRVSEMGTSRVEVEVNVQKCLGQGQERFVGANTISSAAHH--------------------------------------------GDGWSNKILQRRHRWQLLWKAGCVTDVCDVSSMDVIIL----PVHEQHGWTDSDQAGTATGI------------------SPTAQHSIVENL-RTPDHGGQAVANRDVYLQS----------------ALVAVAGQGLQLVLF 5303
GV C AV V A GE R++IVTGGDDQA+CVAE+EV+ D S + + + + G S G +R RL+ +P++ + A+GSAIKG+ LLP P R P+ + TT SP+ +A P + + + ++FT++RDQRLSRW+L + G + RW+L W+AGCVTDVCDVS +DV L P H QH ++ G + SP +H V L R GG+ N + S A+VAV+GQGLQLV+F
Sbjct: 2 GVLCMAVHVPA-GEAGRVVIVTGGDDQAICVAELEVVVVLDDGRCSPTTRIASDRGPSSSQGSRGQGGGEVPARERRSAVRLVAGSPQVFEGAAGSAIKGMQLLPVDPPSXXXXPFRLPGPSTESPTTMQSPTPSAGIHDDDAAVAPPPSSRSANFSFSSTTPAVEPGVGAGAGPPCSLSLFTVARDQRLSRWDLVKDSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGASRQGQKGAAERRWRLRWRAGCVTDVCDVSGLDVAPLSPREPQHRQHAAGEATLGGRSXXXXXXXXXXXXXXXSGDRASSPCHRHRTVARLLRKEGEGGETAENACGGVPSSEAEDWTRGEAFGAPAAIVAVSGQGLQLVVF 463
BLAST of mRNA_H-paniculata_contig321.8640.1 vs. uniprot
Match: A0A8K1FIC8_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FIC8_PYTOL) HSP 1 Score: 62.4 bits (150), Expect = 1.010e-5 Identity = 30/56 (53.57%), Postives = 39/56 (69.64%), Query Frame = 3
Query: 192 TMRGHSGSHVWRLAVHENNGHQMSLMATGGNDGAIKLWDLAYE-AARQEASRSGKI 356
TM+GH G HVWR+AVH M L+ATGG DGA+KLWD+ + A+ E+S SG +
Sbjct: 301 TMQGHQGKHVWRVAVHP----AMPLIATGGGDGAVKLWDVEQQTASAHESSLSGPL 352
BLAST of mRNA_H-paniculata_contig321.8640.1 vs. uniprot
Match: A0A662WW86_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WW86_9STRA) HSP 1 Score: 60.8 bits (146), Expect = 3.030e-5 Identity = 32/75 (42.67%), Postives = 40/75 (53.33%), Query Frame = 3
Query: 192 TMRGHSGSHVWRLAVHENNGHQMSLMATGGNDGAIKLWDLAYEAARQEASRSGKISWGQTNIIPTLSALHPPCST 416
T++GH G HVWR AVH + L+ATGG DGA+KLWDL + + G W QT IP P +T
Sbjct: 322 TLQGHVGRHVWRAAVHPSQ----RLLATGGGDGAVKLWDLTRQMMSSSVA-PGSNDWCQTIRIPVAEGATPSSTT 391 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig321.8640.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig321.8640.1 >prot_H-paniculata_contig321.8640.1 ID=prot_H-paniculata_contig321.8640.1|Name=mRNA_H-paniculata_contig321.8640.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=1714bp MLPATTMRGHSGSHVWRLAVHENNGHQMSLMATGGNDGAIKLWDLAYEAAback to top mRNA from alignment at H-paniculata_contig321:7406..18712+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig321.8640.1 ID=mRNA_H-paniculata_contig321.8640.1|Name=mRNA_H-paniculata_contig321.8640.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=11307bp|location=Sequence derived from alignment at H-paniculata_contig321:7406..18712+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig321:7406..18712+ >mRNA_H-paniculata_contig321.8640.1 ID=mRNA_H-paniculata_contig321.8640.1|Name=mRNA_H-paniculata_contig321.8640.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=10284bp|location=Sequence derived from alignment at H-paniculata_contig321:7406..18712+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |