mRNA_H-paniculata_contig32072.8635.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig32072.8635.1
Unique NamemRNA_H-paniculata_contig32072.8635.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig32072.8635.1 vs. uniprot
Match: D8LIX9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LIX9_ECTSI)

HSP 1 Score: 132 bits (333), Expect = 2.160e-34
Identity = 69/83 (83.13%), Postives = 73/83 (87.95%), Query Frame = 1
Query:    7 YPKIVDDLSNWQVRSVTGSNGAIMVAAETSTISWGTSVGGELGYGEASAT-RTSTKPKLVDPLEGLTVMQVAMGYGHSLLLAR 252
            YPKIV+DLSNWQ RSV GSNGA++VAAETSTISWGTSV GELGYGE   T RTSTKPKLV+ LEGLTVMQVAMG GHSLLLA 
Sbjct:  428 YPKIVEDLSNWQTRSVAGSNGALLVAAETSTISWGTSVAGELGYGEEIGTPRTSTKPKLVNALEGLTVMQVAMGLGHSLLLAE 510          
BLAST of mRNA_H-paniculata_contig32072.8635.1 vs. uniprot
Match: A0A836CDF7_9STRA (Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDF7_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 1.230e-20
Identity = 47/81 (58.02%), Postives = 58/81 (71.60%), Query Frame = 1
Query:    7 YPKIVDDLSNWQVRSVTGSNGAIMVAAETSTISWGTSVGGELGYGEAS-ATRTSTKPKLVDPLEGLTVMQVAMGYGHSLLL 246
            YPKIV+DL NW  R +  S+  IMV AE+S +SWG ++ GELGYGE     +TS KPK++D LEGLTV  VAMG  HS+LL
Sbjct:  418 YPKIVEDLGNWSCRCMAASSQCIMVGAESSAVSWGQAIAGELGYGEGEDIPKTSRKPKILDALEGLTVTGVAMGLAHSVLL 498          
BLAST of mRNA_H-paniculata_contig32072.8635.1 vs. uniprot
Match: A0A3S1BJQ1_ELYCH (Uncharacterized protein n=1 Tax=Elysia chlorotica TaxID=188477 RepID=A0A3S1BJQ1_ELYCH)

HSP 1 Score: 89.0 bits (219), Expect = 9.300e-19
Identity = 46/84 (54.76%), Postives = 61/84 (72.62%), Query Frame = 1
Query:    7 YPKIVDDLSNWQVRSVTGSNGAIMVAAETSTISWGTS-VGGELGYGEASATRTSTKPKLVDPLEGLTVMQVAMGYGHSLLLARC 255
            YPK+V DLS W++RS+  SN +I+VAA+ S +SWG S   GELGYGE    ++ST PK V PL+G+ V QV+ G  H+LL+ARC
Sbjct:  377 YPKLVQDLSGWKIRSIGTSNKSIVVAADESVVSWGPSPCFGELGYGETGI-KSSTTPKEVKPLDGMYVHQVSCGISHTLLIARC 459          
BLAST of mRNA_H-paniculata_contig32072.8635.1 vs. uniprot
Match: A0A2C9K1G5_BIOGL (Uncharacterized protein n=1 Tax=Biomphalaria glabrata TaxID=6526 RepID=A0A2C9K1G5_BIOGL)

HSP 1 Score: 84.3 bits (207), Expect = 4.130e-17
Identity = 42/84 (50.00%), Postives = 60/84 (71.43%), Query Frame = 1
Query:    7 YPKIVDDLSNWQVRSVTGSNGAIMVAAETSTISWGTS-VGGELGYGEASATRTSTKPKLVDPLEGLTVMQVAMGYGHSLLLARC 255
            YPK+V DL  W++RS+  SN +I++AA+ S +SWG S   GELGYGE    ++ST PK + P+EG+ V  V+ G+ H+LL+ARC
Sbjct:  378 YPKLVQDLCGWKIRSIGTSNKSIVLAADESVVSWGPSPCFGELGYGETGI-KSSTVPKEMKPIEGIYVHHVSCGFSHTLLIARC 460          
BLAST of mRNA_H-paniculata_contig32072.8635.1 vs. uniprot
Match: A0A6P4ZUV6_BRABE (protein RCC2 homolog n=4 Tax=Branchiostoma TaxID=7737 RepID=A0A6P4ZUV6_BRABE)

HSP 1 Score: 84.0 bits (206), Expect = 5.700e-17
Identity = 46/83 (55.42%), Postives = 60/83 (72.29%), Query Frame = 1
Query:    7 YPKIVDDLSNWQVRSVTGSNGAIMVAAETSTISWGTS-VGGELGYGEASATRTSTKPKLVDPLEGLTVMQVAMGYGHSLLLAR 252
            YPK + DLS W VRSV  SN +I+VAA+ STISWG S   GELGYGE  A ++ST PK V  L+G+ + +V+ GYGH++ +AR
Sbjct:  384 YPKPIQDLSGWDVRSVGCSNRSIVVAADDSTISWGPSPTYGELGYGENKA-KSSTIPKEVKTLDGVYIHRVSCGYGHTIFIAR 465          
BLAST of mRNA_H-paniculata_contig32072.8635.1 vs. uniprot
Match: UPI0001CBB169 (protein RCC2-like n=1 Tax=Saccoglossus kowalevskii TaxID=10224 RepID=UPI0001CBB169)

HSP 1 Score: 83.6 bits (205), Expect = 7.800e-17
Identity = 43/83 (51.81%), Postives = 61/83 (73.49%), Query Frame = 1
Query:    7 YPKIVDDLSNWQVRSVTGSNGAIMVAAETSTISWGTS-VGGELGYGEASATRTSTKPKLVDPLEGLTVMQVAMGYGHSLLLAR 252
            YPK V DL+ W++RSV  SN +I++AA+ S ISWG S   GELGYG+  A ++ST+PK +  L+G+ +  VA GYGH+L++AR
Sbjct:  380 YPKPVQDLTGWKIRSVGCSNHSIVIAADDSVISWGPSPTYGELGYGDHGA-KSSTQPKEIKLLDGINIHSVACGYGHTLMIAR 461          
BLAST of mRNA_H-paniculata_contig32072.8635.1 vs. uniprot
Match: UPI000A2A8308 (protein RCC2 n=2 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A8308)

HSP 1 Score: 83.6 bits (205), Expect = 7.860e-17
Identity = 44/84 (52.38%), Postives = 60/84 (71.43%), Query Frame = 1
Query:    7 YPKIVDDLSNWQVRSVTGSNGAIMVAAETSTISWGTS-VGGELGYG-EASATRTSTKPKLVDPLEGLTVMQVAMGYGHSLLLAR 252
            YPK V+DLS W VRSV  S  +I+VAA+ S +SWG S   GELGYG +   +++ST+P++V+PLEG+ V  VA G  H+L +AR
Sbjct:  384 YPKRVEDLSGWDVRSVGCSKTSIVVAADESVVSWGPSPTSGELGYGLKKGGSKSSTRPQIVEPLEGVYVYSVACGLSHTLFIAR 467          
BLAST of mRNA_H-paniculata_contig32072.8635.1 vs. uniprot
Match: UPI00103F57D5 (protein RCC2 homolog n=1 Tax=Ostrinia furnacalis TaxID=93504 RepID=UPI00103F57D5)

HSP 1 Score: 77.8 bits (190), Expect = 8.810e-17
Identity = 41/82 (50.00%), Postives = 58/82 (70.73%), Query Frame = 1
Query:    7 YPKIVDDLSNWQVRSVTGSNGAIMVAAETSTISWGTS-VGGELGYGEASATRTSTKPKLVDPLEGLTVMQVAMGYGHSLLLA 249
            YPK V DL+ W +RSV  SN +I++AA+ S I+WG S   GELG GE +  +++ +PK V  ++GL + QVAMGY H+LLL+
Sbjct:    2 YPKPVQDLTGWNIRSVGTSNTSIVIAADDSLIAWGVSPTYGELGTGEIN--KSTARPKEVSRMDGLNITQVAMGYSHTLLLS 81          
BLAST of mRNA_H-paniculata_contig32072.8635.1 vs. uniprot
Match: A0A834RB09_SARSC (Protein RCC2 -like protein n=2 Tax=Sarcoptes scabiei TaxID=52283 RepID=A0A834RB09_SARSC)

HSP 1 Score: 83.2 bits (204), Expect = 1.100e-16
Identity = 43/83 (51.81%), Postives = 62/83 (74.70%), Query Frame = 1
Query:    7 YPKIVDDLSNWQVRSVTGSNGAIMVAAETSTISWGTS-VGGELGYGEASATRTSTKPKLVDPLEGLTVMQVAMGYGHSLLLAR 252
            YPK V DL+ W +RS+  +N +I+VAA+ S ISWG S   GELGYGE + +++ST P+ V PLEG+ + +V+ GYGH+L++AR
Sbjct:  408 YPKNVQDLNGWNIRSIGCANRSIVVAADDSVISWGPSPTYGELGYGE-NKSKSSTIPQEVKPLEGIYIHKVSTGYGHTLMIAR 489          
BLAST of mRNA_H-paniculata_contig32072.8635.1 vs. uniprot
Match: A0A1Y3BRX3_EURMA (RCC2-like protein (Fragment) n=1 Tax=Euroglyphus maynei TaxID=6958 RepID=A0A1Y3BRX3_EURMA)

HSP 1 Score: 79.7 bits (195), Expect = 1.360e-16
Identity = 42/83 (50.60%), Postives = 59/83 (71.08%), Query Frame = 1
Query:    7 YPKIVDDLSNWQVRSVTGSNGAIMVAAETSTISWGTS-VGGELGYGEASATRTSTKPKLVDPLEGLTVMQVAMGYGHSLLLAR 252
            YPK V DL+ W +RSV  +N +I++AA+ S ISWG S   GEL YG+  + ++ST P+ V PLEG+ + +V+ GYGHSL +AR
Sbjct:   93 YPKNVQDLNGWNIRSVGCANRSIVLAADESVISWGPSPTYGELAYGDTKS-KSSTIPQEVKPLEGIHIYRVSNGYGHSLFMAR 174          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig32072.8635.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LIX9_ECTSI2.160e-3483.13Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CDF7_9STRA1.230e-2058.02Regulator of chromosome condensation 1/beta-lactam... [more]
A0A3S1BJQ1_ELYCH9.300e-1954.76Uncharacterized protein n=1 Tax=Elysia chlorotica ... [more]
A0A2C9K1G5_BIOGL4.130e-1750.00Uncharacterized protein n=1 Tax=Biomphalaria glabr... [more]
A0A6P4ZUV6_BRABE5.700e-1755.42protein RCC2 homolog n=4 Tax=Branchiostoma TaxID=7... [more]
UPI0001CBB1697.800e-1751.81protein RCC2-like n=1 Tax=Saccoglossus kowalevskii... [more]
UPI000A2A83087.860e-1752.38protein RCC2 n=2 Tax=Exaiptasia diaphana TaxID=265... [more]
UPI00103F57D58.810e-1750.00protein RCC2 homolog n=1 Tax=Ostrinia furnacalis T... [more]
A0A834RB09_SARSC1.100e-1651.81Protein RCC2 -like protein n=2 Tax=Sarcoptes scabi... [more]
A0A1Y3BRX3_EURMA1.360e-1650.60RCC2-like protein (Fragment) n=1 Tax=Euroglyphus m... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig32072contigH-paniculata_contig32072:1281..2318 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score134.8
Seed ortholog evalue2e-29
Seed eggNOG ortholog2880.D8LIX9
Hectar predicted targeting categoryother localisation
EggNOG free text desc.chromosome passenger complex localization to kinetochore
EggNOG OGsCOG5184@1,KOG1427@2759
COG Functional cat.DZ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size270
Cds size270
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929988.8221385-CDS-H-paniculata_contig32072:1280..14141622929988.8221385-CDS-H-paniculata_contig32072:1280..1414Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32072 1281..1414 +
1691481099.8310356-CDS-H-paniculata_contig32072:1280..14141691481099.8310356-CDS-H-paniculata_contig32072:1280..1414Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32072 1281..1414 +
1622929988.8537068-CDS-H-paniculata_contig32072:2182..23181622929988.8537068-CDS-H-paniculata_contig32072:2182..2318Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32072 2183..2318 +
1691481099.8406742-CDS-H-paniculata_contig32072:2182..23181691481099.8406742-CDS-H-paniculata_contig32072:2182..2318Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32072 2183..2318 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig32072.8635.1prot_H-paniculata_contig32072.8635.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig32072 1281..2318 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig32072.8635.1

>prot_H-paniculata_contig32072.8635.1 ID=prot_H-paniculata_contig32072.8635.1|Name=mRNA_H-paniculata_contig32072.8635.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=90bp
YRYPKIVDDLSNWQVRSVTGSNGAIMVAAETSTISWGTSVGGELGYGEAS
ATRTSTKPKLVDPLEGLTVMQVAMGYGHSLLLARCGIFS*
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mRNA from alignment at H-paniculata_contig32072:1281..2318+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig32072.8635.1 ID=mRNA_H-paniculata_contig32072.8635.1|Name=mRNA_H-paniculata_contig32072.8635.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1038bp|location=Sequence derived from alignment at H-paniculata_contig32072:1281..2318+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TATAGGTACCCGAAGATTGTGGACGATCTTTCCAACTGGCAGGTGCGATC AGTCACGGGGAGCAATGGAGCGATAATGGTTGCGGCGGAAACGAGTACCA TATCCTGGGGCACTAGCGTGGGTGGTGAGCTAGGGTGAGTATCAAATGTC GAAAGAAAGCCATTTTATTATAAGCAGCTAGCTCAATGGAAGATCGCTTT GATTAGAAAGAATCTCCGTAGATCCTCTCGAGGACGTGTTGTTGATAGGC TAGCAACGACGAAATGCAAAACACGGCTACGGACCTACGCCCGAACGGGT AGGGTTGGTCGTGAACTGAGCATGACTGGAAGTCTAGTCAGAGGTCTTTT AGTGGGTGCAACCCCCACACTGCCTACTTGGTTCAGCTGAACCGGGGTGG CGCCTACCCCGCAGAGGAACTAATAACTCTGTTCTGTTAAAGGAAATGTA GAAACACTTTGGTAAAATACTCACGTATGGAAGCATCGGTAAAGGTTTTA GCCTCAGCCTTCCGGGGATTAAAAAAAAATACAAAATGCAGGTACGCCTT CCCTCCCCCCCGTCCCGTTGTTGAGGTAGATGGGGTAGGTGAAAGCTTTT AAAGCCACATTTGGCAAGGTAGGAAAGAGCGATTGGCCATCGGAAATCGA TCTGATCCAGGAACAAATCTCCGGAGATCCTCCTCCCGAGATGCGAAAGA TGTGTTGGCCCGCCCCCTATTGATTGAACTTTTTACTGGCAAGTGTCGTT GTACAACCGGCTGCATGACCTCTACATAAGAGTACAATGGAGTTGATGTA TGAGGTCCGGAATGATAGTTTACCTGACTGTGATGTGACAGGGTCAATTT CCTAGCGAATAGATAGAAATTCAGTTAGCCCGCCTCCCCTCCCTCAATGC AGATACGGCGAGGCAAGCGCGACACGTACCTCTACGAAGCCGAAGCTCGT GGATCCTCTTGAGGGACTGACGGTGATGCAGGTCGCTATGGGCTATGGTC ACAGCCTTTTACTTGCTAGGTGCGGAATTTTCTCGTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig32072:1281..2318+

>mRNA_H-paniculata_contig32072.8635.1 ID=mRNA_H-paniculata_contig32072.8635.1|Name=mRNA_H-paniculata_contig32072.8635.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=540bp|location=Sequence derived from alignment at H-paniculata_contig32072:1281..2318+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TATAGGTACCCGAAGATTGTGGACGATCTTTCCAACTGGCAGGTGCGATC
AGTCACGGGGAGCAATGGAGCGATAATGGTTGCGGCGGAAACGAGTACCA
TATCCTGGGGCACTAGCGTGGGTGGTGAGCTAGGTATAGGTACCCGAAGA
TTGTGGACGATCTTTCCAACTGGCAGGTGCGATCAGTCACGGGGAGCAAT
GGAGCGATAATGGTTGCGGCGGAAACGAGTACCATATCCTGGGGCACTAG
CGTGGGTGGTGAGCTAGGATACGGCGAGGCAAGCGCGACACGTACCTCTA
CGAAGCCGAAGCTCGTGGATCCTCTTGAGGGACTGACGGTGATGCAGGTC
GCTATGGGCTATGGTCACAGCCTTTTACTTGCTAGGTGCGGAATTTTCTC
GTAAATACGGCGAGGCAAGCGCGACACGTACCTCTACGAAGCCGAAGCTC
GTGGATCCTCTTGAGGGACTGACGGTGATGCAGGTCGCTATGGGCTATGG
TCACAGCCTTTTACTTGCTAGGTGCGGAATTTTCTCGTAA
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