mRNA_H-paniculata_contig31805.8570.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig31805.8570.1
Unique NamemRNA_H-paniculata_contig31805.8570.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig31805.8570.1 vs. uniprot
Match: A0A6H5L6U3_9PHAE (Altered inheritance of mitochondria protein 24, mitochondrial n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L6U3_9PHAE)

HSP 1 Score: 286 bits (731), Expect = 2.450e-88
Identity = 209/447 (46.76%), Postives = 257/447 (57.49%), Query Frame = 1 
Query:   16 CHTTISQAGDHILADPRCIVSRGMDLKVDSPAATASPERAGILHGLKRKLLKSHDAEEQRIP----------LERISNGMPANVTDCLLAPIFPGDIALFSVASGSTTLLDVERRRRLSTDDAPPDGKNARRRPQQFSATKRQRIRVGESGGLVAPRVKRG---RTQNLIVVAQALVATGPEVTVSRL-RDVSGGRGDSGGGG--KIGQEPSTITATRGASLLICKGDGPVAIAGCGRLKRLRLKAGQKRTVDLTRAVGWTDDVSWTIDPARQGRSSGSKNGGSVVG---PGSVTNFKGPGVVFIQTHSIAGLRRLFSRPPGAMLQSEA-SGF--GGRRRRGEAM----GAPIVDMGLSLKRGLAKRAKARVQAGARRVLLAMAFFGLYVAVYSVATALLLEGRDGLVKAPRHAVQVLQSLAKVVRRVALVLVRLGQEELWRN-EGG 1275
            C     +AG+HI ADPR IVSRG+ L +  PA     E+ GIL GLKR+L K+    +              LER+SN M +N TDC +AP FPGD+ + SV+SG               +    DGK+            RQR R G SG   A R  R    + + L+++ QA+VA GP V V    R  + G G  GG    +  Q+      T GA L +C+G GP+A+AG G+LK+LRL+ GQKR VD +RAVGWT  V  T      GR+S    G ++      G+ T F GPG V++QTHS+ GLRRL     G  LQ E  SG    GRR  G       G P V  GLSLKRGLAKRAKA    GA+RV LA+AFF LY+ VYS+ TALLLEGRDGL  APRHAVQV++SLAKV RRVA+VLVRLG+EELWR  EGG
Sbjct:   61 CLQVTLKAGEHIKADPRYIVSRGVGLALRPPAPL---EKQGILGGLKRRLRKAAQGRQDHXXXXXXXRDNHRLERVSNTMASNETDCFVAPPFPGDVVVVSVSSGG------------GDESVGEDGKDYDDAHGGDRRKARQR-REGRSGDRPAARGSRHGSVKPRKLVLLTQAIVAVGPGVVVKPSPRPDAAGVGGLGGSSLSRRQQQRGGPVVTTGA-LSLCEGQGPIAVAGYGKLKKLRLRPGQKRLVDSSRAVGWTSGV--TCLTGTGGRASVPTTGNNIGANSPAGAFTTFVGPGTVYVQTHSLPGLRRLLLPKSGVPLQGEVPSGLLEAGRRGAGALFAPRGGPPTV--GLSLKRGLAKRAKA----GAKRVSLAVAFFALYLVVYSLVTALLLEGRDGLANAPRHAVQVVRSLAKVARRVAVVLVRLGREELWREGEGG 482
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BLAST of mRNA_H-paniculata_contig31805.8570.1 vs. uniprot
Match: A0A543HJ15_9MICO (Uncharacterized protein (TIGR00266 family) n=2 Tax=Humibacillus xanthopallidus TaxID=412689 RepID=A0A543HJ15_9MICO)

HSP 1 Score: 55.8 bits (133), Expect = 2.780e-5
Identity = 48/158 (30.38%), Postives = 72/158 (45.57%), Query Frame = 1 
Query:  433 SGGLVAPRVKRGRTQNLIVV---AQALVATGPEVTVSRLRDVSGGRGDSGGGGKIGQEPSTITATRGASLLICKGDGPVAIAGCGRLKRLRLKAGQKRTVDLTRAVGWTDDVSWTIDPARQGRSSGSKNGGSVVGPGSVTNFKGPGVVFIQTHSIAGL 897
            +GG+VA         +L+ V      LV +G  +      DV        GGGK      T  +  G  LL C G G + ++  G ++   L AG++ T+D    V + D V +T+      R +GS     + G G VT+F GPG V++QT S + L
Sbjct:   70 TGGVVAVAAALPGDMSLVTVEGTGALLVQSGSWIASDTSVDVDA----KWGGGK------TFFSGEGLVLLRCTGQGELLMSAYGAIRSYTLAAGEQVTLDTGHVVAFDDTVQYTV------RKAGSWKSTILGGEGLVTDFTGPGRVWLQTRSSSDL 211
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig31805.8570.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L6U3_9PHAE2.450e-8846.76Altered inheritance of mitochondria protein 24, mi... [more]
A0A543HJ15_9MICO2.780e-530.38Uncharacterized protein (TIGR00266 family) n=2 Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig31805contigH-paniculata_contig31805:1228..2562 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionMitochondrial biogenesis protein AIM24
Ec32 orthologEc-10_006230.1
Exons2
Model size1275
Cds size1275
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929979.9295974-CDS-H-paniculata_contig31805:1227..18811622929979.9295974-CDS-H-paniculata_contig31805:1227..1881Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31805 1228..1881 -
1691481095.9134822-CDS-H-paniculata_contig31805:1227..18811691481095.9134822-CDS-H-paniculata_contig31805:1227..1881Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31805 1228..1881 -
1622929979.9477243-CDS-H-paniculata_contig31805:1941..25621622929979.9477243-CDS-H-paniculata_contig31805:1941..2562Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31805 1942..2562 -
1691481095.9285107-CDS-H-paniculata_contig31805:1941..25621691481095.9285107-CDS-H-paniculata_contig31805:1941..2562Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31805 1942..2562 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig31805.8570.1prot_H-paniculata_contig31805.8570.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig31805 1228..2562 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig31805.8570.1

>prot_H-paniculata_contig31805.8570.1 ID=prot_H-paniculata_contig31805.8570.1|Name=mRNA_H-paniculata_contig31805.8570.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=425bp
MVLCLCHTTISQAGDHILADPRCIVSRGMDLKVDSPAATASPERAGILHG
LKRKLLKSHDAEEQRIPLERISNGMPANVTDCLLAPIFPGDIALFSVASG
STTLLDVERRRRLSTDDAPPDGKNARRRPQQFSATKRQRIRVGESGGLVA
PRVKRGRTQNLIVVAQALVATGPEVTVSRLRDVSGGRGDSGGGGKIGQEP
STITATRGASLLICKGDGPVAIAGCGRLKRLRLKAGQKRTVDLTRAVGWT
DDVSWTIDPARQGRSSGSKNGGSVVGPGSVTNFKGPGVVFIQTHSIAGLR
RLFSRPPGAMLQSEASGFGGRRRRGEAMGAPIVDMGLSLKRGLAKRAKAR
VQAGARRVLLAMAFFGLYVAVYSVATALLLEGRDGLVKAPRHAVQVLQSL
AKVVRRVALVLVRLGQEELWRNEGG
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mRNA from alignment at H-paniculata_contig31805:1228..2562-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig31805.8570.1 ID=mRNA_H-paniculata_contig31805.8570.1|Name=mRNA_H-paniculata_contig31805.8570.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1335bp|location=Sequence derived from alignment at H-paniculata_contig31805:1228..2562- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTTTTGTGTCTATGTCATACAACAATCTCTCAGGCGGGAGACCACAT
CCTGGCAGACCCTCGTTGCATCGTGAGCCGAGGTATGGACCTAAAAGTCG
ATTCCCCAGCAGCTACGGCATCGCCAGAGCGCGCCGGCATCCTGCACGGG
CTAAAACGAAAGCTCTTGAAGTCGCACGACGCCGAAGAACAGCGCATTCC
TCTCGAAAGAATATCCAACGGCATGCCCGCCAACGTTACGGATTGCCTCC
TAGCTCCTATTTTCCCCGGAGACATCGCGCTTTTTTCGGTCGCCAGCGGC
AGCACCACGCTGCTCGATGTTGAAAGACGGCGTCGATTATCGACGGACGA
TGCACCACCCGATGGAAAAAACGCCCGCCGCCGCCCGCAGCAATTCTCGG
CGACGAAGCGTCAACGAATACGGGTGGGTGAAAGCGGGGGACTCGTGGCG
CCGCGAGTTAAGCGCGGAAGAACTCAAAATCTTATTGTTGTGGCGCAGGC
ATTAGTAGCAACAGGACCCGAAGTAACCGTATCGCGCTTGCGCGACGTGA
GCGGTGGTAGAGGCGACAGCGGTGGCGGGGGGAAAATAGGGCAAGAACCG
AGCACAATAACGGCAACTCGAGTAGTAGGGACTGGTGTCGGACTAGGAAG
ATTTGGCGGCCAAGCGGGGCGGAGACAGCAGGGTGCGTCGTTGTTAATAT
GCAAAGGAGACGGACCGGTCGCCATCGCAGGCTGTGGGCGACTGAAACGC
CTGCGACTGAAGGCCGGACAAAAACGGACTGTGGACTTGACACGCGCCGT
AGGCTGGACGGATGACGTCAGTTGGACCATTGATCCTGCGCGTCAAGGTC
GGAGCAGCGGCTCAAAAAACGGGGGTTCGGTTGTTGGTCCCGGATCCGTC
ACGAACTTTAAAGGCCCTGGGGTCGTTTTCATACAGACACATTCGATCGC
GGGACTGAGACGATTATTTTCTCGACCACCTGGTGCTATGTTGCAGAGTG
AAGCTTCGGGTTTTGGCGGGCGGCGACGACGGGGGGAAGCGATGGGAGCG
CCAATTGTAGACATGGGTTTGTCTCTTAAAAGGGGGCTGGCAAAGCGTGC
GAAAGCGAGGGTACAAGCTGGAGCGCGAAGGGTTTTGTTGGCCATGGCGT
TTTTTGGTCTATACGTTGCTGTGTACTCCGTGGCAACCGCGCTGCTGTTA
GAAGGAAGAGATGGCCTTGTCAAGGCGCCCAGACACGCGGTACAAGTGTT
GCAGTCGCTCGCGAAGGTCGTACGGCGGGTGGCATTAGTGCTTGTGAGGC
TCGGACAGGAGGAGTTGTGGAGGAACGAAGGTGGT
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Coding sequence (CDS) from alignment at H-paniculata_contig31805:1228..2562-

>mRNA_H-paniculata_contig31805.8570.1 ID=mRNA_H-paniculata_contig31805.8570.1|Name=mRNA_H-paniculata_contig31805.8570.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2550bp|location=Sequence derived from alignment at H-paniculata_contig31805:1228..2562- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTTTTGTGTCTATGTCATACAACAATCTCTCAGGCGGGAGACCACAT
CCTGGCAGACCCTCGTTGCATCGTGAGCCGAGGTATGGACCTAAAAGTCG
ATTCCCCAGCAGCTACGGCATCGCCAGAGCGCGCCGGCATCCTGCACGGG
CTAAAACGAAAGCTCTTGAAGTCGCACGACGCCGAAGAACAGCGCATTCC
TCTCGAAAGAATATCCAACGGCATGCCCGCCAACGTTACGGATTGCCTCC
TAGCTCCTATTTTCCCCGGAGACATCGCGCTTTTTTCGGTCGCCAGCGGC
AGCACCACGCTGCTCGATGTTGAAAGACGGCGTCGATTATCGACGGACGA
TGCACCACCCGATGGAAAAAACGCCCGCCGCCGCCCGCAGCAATTCTCGG
CGACGAAGCGTCAACGAATACGGGTGGGTGAAAGCGGGGGACTCGTGGCG
CCGCGAGTTAAGCGCGGAAGAACTCAAAATCTTATTGTTGTGGCGCAGGC
ATTAGTAGCAACAGGACCCGAAGTAACCGTATCGCGCTTGCGCGACGTGA
GCGGTGGTAGAGGCGACAGCGGTGGCGGGGGGAAAATAGGGCAAGAACCG
AGCACAATAACGGCAACTCGAATGGTTTTGTGTCTATGTCATACAACAAT
CTCTCAGGCGGGAGACCACATCCTGGCAGACCCTCGTTGCATCGTGAGCC
GAGGTATGGACCTAAAAGTCGATTCCCCAGCAGCTACGGCATCGCCAGAG
CGCGCCGGCATCCTGCACGGGCTAAAACGAAAGCTCTTGAAGTCGCACGA
CGCCGAAGAACAGCGCATTCCTCTCGAAAGAATATCCAACGGCATGCCCG
CCAACGTTACGGATTGCCTCCTAGCTCCTATTTTCCCCGGAGACATCGCG
CTTTTTTCGGTCGCCAGCGGCAGCACCACGCTGCTCGATGTTGAAAGACG
GCGTCGATTATCGACGGACGATGCACCACCCGATGGAAAAAACGCCCGCC
GCCGCCCGCAGCAATTCTCGGCGACGAAGCGTCAACGAATACGGGTGGGT
GAAAGCGGGGGACTCGTGGCGCCGCGAGTTAAGCGCGGAAGAACTCAAAA
TCTTATTGTTGTGGCGCAGGCATTAGTAGCAACAGGACCCGAAGTAACCG
TATCGCGCTTGCGCGACGTGAGCGGTGGTAGAGGCGACAGCGGTGGCGGG
GGGAAAATAGGGCAAGAACCGAGCACAATAACGGCAACTCGAGGTGCGTC
GTTGTTAATATGCAAAGGAGACGGACCGGTCGCCATCGCAGGCTGTGGGC
GACTGAAACGCCTGCGACTGAAGGCCGGACAAAAACGGACTGTGGACTTG
ACACGCGCCGTAGGCTGGACGGATGACGTCAGTTGGACCATTGATCCTGC
GCGTCAAGGTCGGAGCAGCGGCTCAAAAAACGGGGGTTCGGTTGTTGGTC
CCGGATCCGTCACGAACTTTAAAGGCCCTGGGGTCGTTTTCATACAGACA
CATTCGATCGCGGGACTGAGACGATTATTTTCTCGACCACCTGGTGCTAT
GTTGCAGAGTGAAGCTTCGGGTTTTGGCGGGCGGCGACGACGGGGGGAAG
CGATGGGAGCGCCAATTGTAGACATGGGTTTGTCTCTTAAAAGGGGGCTG
GCAAAGCGTGCGAAAGCGAGGGTACAAGCTGGAGCGCGAAGGGTTTTGTT
GGCCATGGCGTTTTTTGGTCTATACGTTGCTGTGTACTCCGTGGCAACCG
CGCTGCTGTTAGAAGGAAGAGATGGCCTTGTCAAGGCGCCCAGACACGCG
GTACAAGTGTTGCAGTCGCTCGCGAAGGTCGTACGGCGGGTGGCATTAGT
GCTTGTGAGGCTCGGACAGGAGGAGTTGTGGAGGAACGAAGGTGGTGGTG
CGTCGTTGTTAATATGCAAAGGAGACGGACCGGTCGCCATCGCAGGCTGT
GGGCGACTGAAACGCCTGCGACTGAAGGCCGGACAAAAACGGACTGTGGA
CTTGACACGCGCCGTAGGCTGGACGGATGACGTCAGTTGGACCATTGATC
CTGCGCGTCAAGGTCGGAGCAGCGGCTCAAAAAACGGGGGTTCGGTTGTT
GGTCCCGGATCCGTCACGAACTTTAAAGGCCCTGGGGTCGTTTTCATACA
GACACATTCGATCGCGGGACTGAGACGATTATTTTCTCGACCACCTGGTG
CTATGTTGCAGAGTGAAGCTTCGGGTTTTGGCGGGCGGCGACGACGGGGG
GAAGCGATGGGAGCGCCAATTGTAGACATGGGTTTGTCTCTTAAAAGGGG
GCTGGCAAAGCGTGCGAAAGCGAGGGTACAAGCTGGAGCGCGAAGGGTTT
TGTTGGCCATGGCGTTTTTTGGTCTATACGTTGCTGTGTACTCCGTGGCA
ACCGCGCTGCTGTTAGAAGGAAGAGATGGCCTTGTCAAGGCGCCCAGACA
CGCGGTACAAGTGTTGCAGTCGCTCGCGAAGGTCGTACGGCGGGTGGCAT
TAGTGCTTGTGAGGCTCGGACAGGAGGAGTTGTGGAGGAACGAAGGTGGT
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