prot_H-paniculata_contig31805.8570.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig31805.8570.1
Unique Nameprot_H-paniculata_contig31805.8570.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length425
Homology
BLAST of mRNA_H-paniculata_contig31805.8570.1 vs. uniprot
Match: A0A6H5L6U3_9PHAE (Altered inheritance of mitochondria protein 24, mitochondrial n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L6U3_9PHAE)

HSP 1 Score: 286 bits (731), Expect = 2.450e-88
Identity = 209/447 (46.76%), Postives = 257/447 (57.49%), Query Frame = 0
Query:    6 CHTTISQAGDHILADPRCIVSRGMDLKVDSPAATASPERAGILHGLKRKLLKSHDAEEQRIP----------LERISNGMPANVTDCLLAPIFPGDIALFSVASGSTTLLDVERRRRLSTDDAPPDGKNARRRPQQFSATKRQRIRVGESGGLVAPRVKRG---RTQNLIVVAQALVATGPEVTVSRL-RDVSGGRGDSGGGG--KIGQEPSTITATRGASLLICKGDGPVAIAGCGRLKRLRLKAGQKRTVDLTRAVGWTDDVSWTIDPARQGRSSGSKNGGSVVG---PGSVTNFKGPGVVFIQTHSIAGLRRLFSRPPGAMLQSEA-SGF--GGRRRRGEAM----GAPIVDMGLSLKRGLAKRAKARVQAGARRVLLAMAFFGLYVAVYSVATALLLEGRDGLVKAPRHAVQVLQSLAKVVRRVALVLVRLGQEELWRN-EGG 425
            C     +AG+HI ADPR IVSRG+ L +  PA     E+ GIL GLKR+L K+    +              LER+SN M +N TDC +AP FPGD+ + SV+SG               +    DGK+            RQR R G SG   A R  R    + + L+++ QA+VA GP V V    R  + G G  GG    +  Q+      T GA L +C+G GP+A+AG G+LK+LRL+ GQKR VD +RAVGWT  V  T      GR+S    G ++      G+ T F GPG V++QTHS+ GLRRL     G  LQ E  SG    GRR  G       G P V  GLSLKRGLAKRAKA    GA+RV LA+AFF LY+ VYS+ TALLLEGRDGL  APRHAVQV++SLAKV RRVA+VLVRLG+EELWR  EGG
Sbjct:   61 CLQVTLKAGEHIKADPRYIVSRGVGLALRPPAPL---EKQGILGGLKRRLRKAAQGRQDHXXXXXXXRDNHRLERVSNTMASNETDCFVAPPFPGDVVVVSVSSGG------------GDESVGEDGKDYDDAHGGDRRKARQR-REGRSGDRPAARGSRHGSVKPRKLVLLTQAIVAVGPGVVVKPSPRPDAAGVGGLGGSSLSRRQQQRGGPVVTTGA-LSLCEGQGPIAVAGYGKLKKLRLRPGQKRLVDSSRAVGWTSGV--TCLTGTGGRASVPTTGNNIGANSPAGAFTTFVGPGTVYVQTHSLPGLRRLLLPKSGVPLQGEVPSGLLEAGRRGAGALFAPRGGPPTV--GLSLKRGLAKRAKA----GAKRVSLAVAFFALYLVVYSLVTALLLEGRDGLANAPRHAVQVVRSLAKVARRVAVVLVRLGREELWREGEGG 482          
BLAST of mRNA_H-paniculata_contig31805.8570.1 vs. uniprot
Match: A0A543HJ15_9MICO (Uncharacterized protein (TIGR00266 family) n=2 Tax=Humibacillus xanthopallidus TaxID=412689 RepID=A0A543HJ15_9MICO)

HSP 1 Score: 55.8 bits (133), Expect = 2.780e-5
Identity = 48/158 (30.38%), Postives = 72/158 (45.57%), Query Frame = 0
Query:  145 SGGLVAPRVKRGRTQNLIVV---AQALVATGPEVTVSRLRDVSGGRGDSGGGGKIGQEPSTITATRGASLLICKGDGPVAIAGCGRLKRLRLKAGQKRTVDLTRAVGWTDDVSWTIDPARQGRSSGSKNGGSVVGPGSVTNFKGPGVVFIQTHSIAGL 299
            +GG+VA         +L+ V      LV +G  +      DV        GGGK      T  +  G  LL C G G + ++  G ++   L AG++ T+D    V + D V +T+      R +GS     + G G VT+F GPG V++QT S + L
Sbjct:   70 TGGVVAVAAALPGDMSLVTVEGTGALLVQSGSWIASDTSVDVDA----KWGGGK------TFFSGEGLVLLRCTGQGELLMSAYGAIRSYTLAAGEQVTLDTGHVVAFDDTVQYTV------RKAGSWKSTILGGEGLVTDFTGPGRVWLQTRSSSDL 211          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig31805.8570.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L6U3_9PHAE2.450e-8846.76Altered inheritance of mitochondria protein 24, mi... [more]
A0A543HJ15_9MICO2.780e-530.38Uncharacterized protein (TIGR00266 family) n=2 Tax... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002838Mitochondrial biogenesis protein AIM24PFAMPF01987AIM24coord: 156..294
e-value: 7.9E-11
score: 42.1
IPR036983Mitochondrial biogenesis AIM24 superfamilyGENE3D3.60.160.10coord: 157..306
e-value: 4.7E-11
score: 44.3
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..357
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 381..425
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 358..380
NoneNo IPR availableTMHMMTMhelixcoord: 358..380
IPR016031Tryptophan RNA-binding attenuator protein-like domain superfamilySUPERFAMILY51219TRAP-likecoord: 203..301

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig31805contigH-paniculata_contig31805:1228..2562 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig31805.8570.1mRNA_H-paniculata_contig31805.8570.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig31805 1228..2562 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig31805.8570.1 ID=prot_H-paniculata_contig31805.8570.1|Name=mRNA_H-paniculata_contig31805.8570.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=425bp
MVLCLCHTTISQAGDHILADPRCIVSRGMDLKVDSPAATASPERAGILHG
LKRKLLKSHDAEEQRIPLERISNGMPANVTDCLLAPIFPGDIALFSVASG
STTLLDVERRRRLSTDDAPPDGKNARRRPQQFSATKRQRIRVGESGGLVA
PRVKRGRTQNLIVVAQALVATGPEVTVSRLRDVSGGRGDSGGGGKIGQEP
STITATRGASLLICKGDGPVAIAGCGRLKRLRLKAGQKRTVDLTRAVGWT
DDVSWTIDPARQGRSSGSKNGGSVVGPGSVTNFKGPGVVFIQTHSIAGLR
RLFSRPPGAMLQSEASGFGGRRRRGEAMGAPIVDMGLSLKRGLAKRAKAR
VQAGARRVLLAMAFFGLYVAVYSVATALLLEGRDGLVKAPRHAVQVLQSL
AKVVRRVALVLVRLGQEELWRNEGG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002838AIM24
IPR036983AIM24_sf
IPR016031Trp_RNA-bd_attenuator-like_dom