mRNA_H-paniculata_contig3180.8568.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3180.8568.1
Unique NamemRNA_H-paniculata_contig3180.8568.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig3180.8568.1 vs. uniprot
Match: D7FM73_ECTSI (Fibronectin type-III domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FM73_ECTSI)

HSP 1 Score: 102 bits (254), Expect = 3.330e-22
Identity = 48/80 (60.00%), Postives = 60/80 (75.00%), Query Frame = 3 
Query:  552 RSTLHQEWANCRSESV--EKGSPTESFHKKIDGLNPSSSYIFRLYAVTSDGQEIGPGPEVAFDTEVVSCAPKSNACCVVA 785
            R  L  +WA CRS ++  E+ S TE    K+ GLNPSSSYIFRLY VT+ GQE+GPGPE+AFDTEVVSCAP + +CC ++
Sbjct:   33 REILVSDWAGCRSIAIAPEQSSSTE-MSTKVTGLNPSSSYIFRLYTVTAAGQEVGPGPEIAFDTEVVSCAPTNKSCCTIS 111
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BLAST of mRNA_H-paniculata_contig3180.8568.1 vs. uniprot
Match: A0A835YPU1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPU1_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 4.390e-8
Identity = 31/70 (44.29%), Postives = 45/70 (64.29%), Query Frame = 3 
Query:  612 PTESFHK--KIDGLNPSSSYIFRLYAVTSDGQEIGPGPEVAFDTEVVSCAPKSNACCVVA*CICGIDIWS 815
            P+++ H+  K+  L PS +YIFRL+ + + G+  GPGP+ AFDTEVVSC P S + C      CG+ + S
Sbjct:   55 PSQTGHETVKVTDLLPSMTYIFRLWIMGAGGKLEGPGPDTAFDTEVVSCTPTSRSVC------CGVCVVS 118
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3180.8568.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FM73_ECTSI3.330e-2260.00Fibronectin type-III domain-containing protein n=2... [more]
A0A835YPU1_9STRA4.390e-844.29Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3180contigH-paniculata_contig3180:883..7366 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionFibronectin type III domain protein
Ec32 orthologEc-16_004820.1
Exons2
Model size2391
Cds size357
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3180.8568.1prot_H-paniculata_contig3180.8568.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3180 2486..6935 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929979.6544511-UTR-H-paniculata_contig3180:882..24851622929979.6544511-UTR-H-paniculata_contig3180:882..2485Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3180 883..2485 -
1691481095.766918-UTR-H-paniculata_contig3180:882..24851691481095.766918-UTR-H-paniculata_contig3180:882..2485Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3180 883..2485 -
1622929979.7094007-UTR-H-paniculata_contig3180:6935..73661622929979.7094007-UTR-H-paniculata_contig3180:6935..7366Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3180 6936..7366 -
1691481095.8029916-UTR-H-paniculata_contig3180:6935..73661691481095.8029916-UTR-H-paniculata_contig3180:6935..7366Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3180 6936..7366 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929979.678063-CDS-H-paniculata_contig3180:2485..25321622929979.678063-CDS-H-paniculata_contig3180:2485..2532Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3180 2486..2532 -
1691481095.7783117-CDS-H-paniculata_contig3180:2485..25321691481095.7783117-CDS-H-paniculata_contig3180:2485..2532Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3180 2486..2532 -
1622929979.6912167-CDS-H-paniculata_contig3180:6625..69351622929979.6912167-CDS-H-paniculata_contig3180:6625..6935Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3180 6626..6935 -
1691481095.7943377-CDS-H-paniculata_contig3180:6625..69351691481095.7943377-CDS-H-paniculata_contig3180:6625..6935Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3180 6626..6935 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3180.8568.1

>prot_H-paniculata_contig3180.8568.1 ID=prot_H-paniculata_contig3180.8568.1|Name=mRNA_H-paniculata_contig3180.8568.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=119bp
MSSTFLDLHQSAKKQHQPHQVRVFISTHICFLYFRVFSPMRSTLHQEWAN
CRSESVEKGSPTESFHKKIDGLNPSSSYIFRLYAVTSDGQEIGPGPEVAF
DTEVVSCAPKSNACCVVA*
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mRNA from alignment at H-paniculata_contig3180:883..7366-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3180.8568.1 ID=mRNA_H-paniculata_contig3180.8568.1|Name=mRNA_H-paniculata_contig3180.8568.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6484bp|location=Sequence derived from alignment at H-paniculata_contig3180:883..7366- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCACACAGGGAGCGAGCGTTGGATGTGGGATACAGGTTGGAGCTGCGAGA
GATACTTACACCGGTAAATAAGCGTCCTGCCTTCGGCAAATGGTTCTCGT
TTACCGCGTGTCTGATGGGCTCTATTACTTGCTTAATTGCTTCGGTCGGC
TGTGCGGTATTGCACTGTACTGTGCAGCATTGTAATACTACTCCAACTCC
ACACCGCACCGCATCGCACCGTACCGTACCGTACCCGTAACGCAATGTAG
CAACAGAGGGGCTCTATTTTTTGTAGGAAAACGCGGACATAGGACACCTT
CTATCACGGGATCATTCGTGCATATACTTCCTGCATGTTCTGCTCTGTCA
CCGCTGCTACCGTTTTCCCATGTAGCAACATATTTTTCCTCCGCGAATAC
AACCGTGTTATCCTGTCCGGTTTACATCGATATGTCCTCGACCTTCCTCG
ACCTTCACCAAAGCGCAAAAAAACAACATCAACCCCACCAAGTCCGAGTT
TTCATATCTACACATATTTGTTTTTTGTATTTCCGTGTGTTTTCGCCTAT
GCGTTCAACGTTGCACCAGGAATGGGCGAATTGCCGCTCCGAAAGTGTCG
AAAAGGGATCTCCAACCGAATCATTCCACAAAAAAATTGATGGCCTCAAC
CCATCATCTTCTTACATATTTCGTCTTTATGCCGTCACAAGCGATGGACA
AGAAATCGGACCAGGGCCTGAGGTTGCTTTCGATACAGAAGGTATGGACT
ACAGCACAGTATTAGAGAGTTGGCAAAAAATGGTTCTCTTCCCAGGATTT
GATTTTAACTGAGGACAGGAAAATCCGGGACAATTTATTTCAAATTTGTC
CAACATCTCAGGATTTGGGTTCGGCGGAACCGACTATGACGTGGCTGTCA
AACTGCGTGAACAGGTACAAACCGCGCCGCGTTAACCCGGAGGTTTGCTA
AGTGATATTCCAATTCGAAAGTGAAGCCACAAAATTAAGGGGAACGATAC
CGGGTGGTGGTGGTCGATGGCCCAAAATCGATCCCAACGACCAAAATGAA
ATCCTCTATTTGTTATTTCTGGGTCATAACCCCAACATTACAGATTACTT
GATTTAAGTTTTGAAATATGTATCGAGTAAACCTTAGCTCTGAGATCGAA
CTGGCTATTGCGAATGTATGAAGTACGTGTCGACACCTGTGATGTAGTGG
ATGTGCAGTGGCAATTTTTAGATTCGTCTTATACATGTATATTGGTAATG
CACATAACAAAAATAGTGTATTTTTCAGATATTTCCGTCCGTAGCTCGCA
CATTTTCCCCTTTAGCCAAATTCGCCACTGGACTGGTCACAGCAAACACA
ACACAATAAAGCGCACACGATTCCTCGCAGTTGTCGACGAGAAGTGCCTC
ATCGAAGATCGCATTGCTTGCCTTGCGGCCAAGTTTTTCGATACTAATTT
CAAGTATAAAACAATGTAGAACATAACTCAGCATGACTTGGCGGCTATGC
GTTTCTGTACTAATTTCAAGTATAAATCTATATACCTAAATTGAGCAGTA
TATCAGCAAGATTCATAATATTTACCGAGATTTAAAAAAAAAAGTGACAA
CTGCACAAAATTTTGAGGCGAGTACAGTCGCCGGCGGGACAGAAGCCACC
TCGTGGCCGGTGTACAGCAGTACTACAGTTAGTACAGTCAGTAGACCAGA
TCGCTCGATAAGACCTGCCTCACCCCCTTTTATGCGTTTTGGTAGTCGTA
AAGCTCAGCAATAAGCGAATATGGGCCCCCGTCGAAGACCCGGAGCACCA
GGGCAAATGGAGAAAAGTAAACAGCTAACGCGCAAACTGGTCAAAACGAG
AACTGGTGGAAGCCCTTCAAAACAACAATCTCGGGGACACGTTTTCAACC
ATGGATCATCCCCATCGCTCCTCTTAACAGTGCCGCCTGCCGCACCACTA
TTATTCGAGTGTCGCCGTGGGTGTGACACACTCTGTGGAGACTGGAGACG
CGAGTAGCACCCAACACAGCAGCCGTAGAGCACGTCTCTACTGTGGATCC
AGGAACAGATCAGACGTAGGGTACTTGTGATGACTTGGCGTAAGCTACAG
TTACTCTGCGCTCTGTACTCGGACAAGTGGCTCTTTGCCAAAGTTGGGTA
CATAGACATCATTGGCTACTTGGGCATCGCCCGTTTTGGTGTCAACAATC
AATATCTTTGACCCAACAATTTGGATTACAACCTAAATTTGTAGAATTCT
AATAATATAATAAAAGCAAAGATAAAAGCGGAGATCTTAAGTGCCTCTCT
CCAAACAAGAATTACTTTACTGAGGGGACAGAGGACGTATACCACTACAG
TAGTAGTACATGTAGTACTACTGGCTGTACCGTACCCTACATAAGAAACT
CTTATTTGGGGCGAGGCTCGTGGCTTATTTATGTCCGAGCCGAGCATAAT
TTCTTAAAGCTAATATTTTCTGAACACGTGTAATGATGAATTTCTTGAAT
CAATTTCTTATTCTGCGAACGGATGCGGTATAGCGCAGTAAGATATTCAT
TTATTATTTGTCTTTCTCCAGCGTTGCTTAGGCAAATGACCAACAGTAGG
TCTCGTAGCATACAGTAAAATATATTGAACAGTAGTGCCGCCACCTGTAC
AGTACACTACAACAGTACAGCAAAAAAATAAATTGCAATACAAGTACATA
CCATGGTATTGAAGACATGAAAATATATTGAACACTTTCTTCGACGTCAA
GTTTGCCTTTACGGCTGGCTGTATTGTACAACAATATTGTAATGTACTAT
AATACTGTACTGCAGTCAGTACAACCAATCAACCTTGAAGCTCTACATTG
CGCACGTTTAGCGTTAAAGCTCTCCCGGAGGTACGTACTGCGGGTCTTCC
TACTCCTGCTCCTGAACCTCCAGACTTTCTGTTCTGCCCTCCGTTCCTAA
CTGTACCCTCGACCTACTCTTCCTCGTTCGGCTCTAGCAAAGCCCACGCA
CCCACCGCCGCGCTGGGGTTTGTGCTGTACCCATATAACGGAAGCTTCAT
TCTACGTGTGTTTTGGTCTTCCTCTAGATGCACACGGTAGTTGTATACAC
GGCTAGTCCGCTCCTGAGGCTTGCGAGTGATCAACCCACCAAACCACCCC
ATTTTCAGTCTTAGTAGTACTCCACGCTTCACTAAAGAATTGTCTAGAAC
AGCTGGCCTCGAGGCTTGCAGGCGAAACCTATCGCGCATCACCATGCCAA
CGACACCGTCTTCCTCCACTACCTCGTTATCATCGTTCAACAGCGTCGGG
TGTATATGGCAGATTTCTTCTTTGCCAACCCTCTTGCATCTCTCGATTTC
TAATTCTTCTTGTCACCTTGTTTTTGTTTGTTTGTTTTTTTAACCCCCGG
AAGGCTGAGGCAAAAACCTTTTCCGCTGCTTCCACATCCAGACATATCCT
TTAATAGACCAGAGTCACCTTGGTCTGAGTACAATTTCTTAGTATGAATT
TCTTAAAATCTATAAAACGAGCCTCGGTTTCTGAACGTACTCTGATACCT
TTATACCTTATGACCACTGATTGTATTGACTGCAACGTACTGCTTGTTTT
TTTGGGGGTCTTTTCGTCCTCGACGTATTAGGCAAGAACCATCGGTGAGG
GTAAGGTATCCTACCCCCAGATCTAAATGCAGCAGTACTACAGGACACCA
TCCCTGAAAGACGAGTACACGCGGAGAGTAGTTTCGGCCTGTGAACTATG
ATGCCATAATACACGTGGTGTAAGCTCTAATTCAACCGCAATCCCGAGGT
ATTTGAACGTCTGCTCAACGTTACCAGCATCAGCATTCACGATTGCCGCA
GTAGACAGTACCGCGTGTCGTGCTTTTGTCTTTGGCTGGTTCGATGTTTT
GCCTTGGGGGCCTTGCGTTGTGTGTGTGTATTGGTGCATGAGGGCTATGA
GGGGGTGTACGTTTGTGTGGGCCACATGACATATGTTGCGGTTCGCAGTA
TGACCATGAACCACAGCTGATCCTGAGAGCGTGAGCAGCAACCAAAAAAA
GAAAACACTATCAGGGTCAGGACGCCCTTTTCGTAATATTGAAAGTTTTT
GTTTTTTTGCTTCAGGGTTCTGGCTCAAGGAAATAATTGGGGGAATAGTC
ATGTATTAACCAAAATCCGGACCCTAAGTCAAAATCCGGAGAAAAAAAAC
GGGTTTTGTTTTTGTCCAAAACTCCCTATTGTCGGATCGGGATCCCCAGC
TCATTGTATTACAACTTACACGCAGTGTGAGTTCGCCGGTCAAAGCTAAC
GCAGCAACTGCAACGCTGCTAACATGATGTAACGTCATCTACTGTAGTCG
GTTCTTTTCCCTGCTAGTCGACTGGTTGGATCCAGTGACGAACGTTTGAC
TCTCGATTCCCCAGGGTTTTAATCACCGAGGAAGAACCCAGTGAAGCTGT
GATTTCTCACCCTTCCGCACCCCAGCCTGGTGAGAATTTTGAAACCAAAC
TCGCACATGATTTGTCATCGAAGACGGTTCCATCCAAGGCGGCAGAGACG
TTACGCGGCGTAGGGACCCATCAAATCAGGGATTGCCACGAACATTGAAC
ATGCCGATCAGCGTATGGAATGTCCCGCATAGTTGCCCGAGACAATTTGT
ACTGCTCGTGAATCACTTGTTCACATCGATTTTGCTCATAACAGTTCGGA
CTCTACTGTATGGCTCCTGTGGTTCCTTTTGGGATACCCAATTGCCAAAC
CTGGCGCATTCTCCCTCCCTCTCTCCCCCTTCCCGTTGCTGCTCTTGTCG
TATACTGCCTGCTTGTTGCACGATGTTACTGCAGTTGTTTCGTGCGCCCC
AAAGTCGAACGCCTGTTGTGTGGTCGCGTGATGTATATGTGGCATTGATA
TATGGTCGGCATGGTGCGTCCAAATCCTGCGACTCAGACAGAATCACAGA
GCAAAGAGGTCGCCGTTACACGTACGCAATTGTGGAGGAGGGGATGAGGC
CACGGGAATTGCCTTGTGGTAGACTTGAAGAAGCGAAAGACGTTCTTTGC
GTGAGGGTAAAATGACTGCGATTCGTCCCGGTCTCTGGGTTATAGTAAGA
AATTGGGTTATTCATCAGCAAAGACGAGCAACGCGCAGAAACACTGCTTT
AAGTTGGATGTGACATTCATGTTGAAAGTCGTGTGCTATTGTGGCAGTTA
GCTCTCTTCGGGGAGAGGGGTTGCGCTAGAATTAAAATACTGTACTGTTT
GCAATAACCCTTTTCCATGTGGAAAATGTACTTAATTGGTTGCCGAAATG
TGATTTCGCCTTCGTAATTTCACAGATGGCGAGTTGTGTCAATTTTGAGA
AACACGTGTGCCTTTACTTTGTATGTAGGTTTCTCGAGAGGCTCGTGATA
TGGATTAGTGTTTCTGTGTGTTCGTTCACCCAAAGGTTTGCGGGATGGCA
ATGTCTGCGATTTTGGCTGCCACCTACTTAATTTCGCAGCGGCAATTGTC
AATTGTTCATATTAAATTTTGGAAAAGAAGGGTTCTAGTTCCGAACCGAT
TGATTTGAGAGTTTCCATTTGCTGGATCTAGTCTTGAGACCGATCCAAGT
AGCATGTTTTTTATTTTTATTTTTATTTTTTAAACCCTCGGAAGGCTGAG
GCAAAAACCATTACCGATGCTTCCATACTTCAGTATTTTACCAAAGTATG
TCTACATTTCCTTTAAGAGAACAGAGTTATTTATTCCTCTGCGTGGTAGG
CGCTACCCGGGTTCGGCCGAACCAAGTAGGCAGTGTAGGGGTTGCACCCA
TTAAAATACCTCTGACTAGACTTCCAGTCATGCTCAGTTCACAAGCTACC
CTACCCGTTCGGGCATAGTTCCGTGGCCAAATAGGATGTTTGTCCCGCTA
GAGCCTCCATTATTCATTCATGAATGTGACGTCCAGTATTGGAAGTTTGA
TAGATAGATGGATAACATTTGCTGGAATGAAGGAGCAGGCAGGCGACCCG
TTGTTGATGACAGTGTCTTCGATTCCATCGGAAATCCCTTCGCAGCAGCA
GGGTCCTCACTCGATGGACGAGAGGTCAATATTGTCTCATCGCCACGCGT
GTTCCACGGAATGTAGCCCAAGTCGATCAGCTTTATGGTATCAACCGATT
AACTTGCATTAGCCATAATATGGTATACCACTTCACTAACAAGGTGCTGT
CCTTCTTGTGTTGGATAGGAGATAGTACAAGTGGGTGGATACAAGTTGTT
TAGTTCGTTCTTCGTGGATAATACTGAACGCTGTCCCCAGGGGGACGAAA
ATGTAAGTTGTTCTTTCCGTCGGCAATTTTTCAGATCGTAACACCCTTGC
CACCCCCCCTTCATTGCACAACTCTGCAAACAACATTGGAGGTTGCTGCC
ACGAGGTTTGTGTTCCGTCGCGTGCATGCGTAACTGATCACTGCAATGAG
CTTCGAATTTGATGGTGTGCCAAACACGCCCGAC
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Coding sequence (CDS) from alignment at H-paniculata_contig3180:883..7366-

>mRNA_H-paniculata_contig3180.8568.1 ID=mRNA_H-paniculata_contig3180.8568.1|Name=mRNA_H-paniculata_contig3180.8568.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=714bp|location=Sequence derived from alignment at H-paniculata_contig3180:883..7366- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCCTCGACCTTCCTCGACCTTCACCAAAGCGCAAAAAAACAACATCA
ACCCCACCAAGTCCGAGTTTTCATATCTACACATATTTGTTTTTTGTATT
TCCGTGTGTTTTCGCCTATGCGTTCAACGTTGCACCAGGAATGGGCGAAT
TGCCGCTCCGAAAGTGTCGAAAAGGGATCTCCAACCGAATCATTCCACAA
AAAAATTGATGGCCTCAACCCATCATCTTCTTACATATTTCGTCTTTATG
CCGTCACAAGCGATGGACAAGAAATCGGACCAGGGCCTGAGGTTGCTTTC
GATACAGAAGATGTCCTCGACCTTCCTCGACCTTCACCAAAGCGCAAAAA
AACAACATCAACCCCACCAAGTCCGAGTTTTCATATCTACACATATTTGT
TTTTTGTATTTCCGTGTGTTTTCGCCTATGCGTTCAACGTTGCACCAGGA
ATGGGCGAATTGCCGCTCCGAAAGTGTCGAAAAGGGATCTCCAACCGAAT
CATTCCACAAAAAAATTGATGGCCTCAACCCATCATCTTCTTACATATTT
CGTCTTTATGCCGTCACAAGCGATGGACAAGAAATCGGACCAGGGCCTGA
GGTTGCTTTCGATACAGAAGTTGTTTCGTGCGCCCCAAAGTCGAACGCCT
GTTGTGTGGTCGCGTGATTGTTTCGTGCGCCCCAAAGTCGAACGCCTGTT
GTGTGGTCGCGTGA
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