mRNA_H-paniculata_contig3174.8549.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3174.8549.1
Unique NamemRNA_H-paniculata_contig3174.8549.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig3174.8549.1 vs. uniprot
Match: D7FRF0_ECTSI (Tesmin-like, animal TCX proteins are associated with development of both male and female reproductiv n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRF0_ECTSI)

HSP 1 Score: 218 bits (556), Expect = 5.270e-64
Identity = 108/140 (77.14%), Postives = 115/140 (82.14%), Query Frame = 1
Query:  109 AGEGEGRHPGGEGGTTTCNCKKSKCLKLYCECFQRKQYCTDCNCKDCCNTPLTEAMRQGAIQSTIERNPSAFVSKFEKRAGGKRAHNAGCNCKKSACLKKYCECFQAGVACGTNCKCSNCKNYEGAAGGRKRRAPDPSVA 528
            AG G GR P     + TCNCKKSKCLKLYCECFQR+QYC  CNC +C NT  TE +RQ AIQ TIERNP AFVSKFE+RAG KR+HNAGCNCKKSACLKKYCECFQAGVACGTNCKC NCKNYEGAAGGRKRRA +   A
Sbjct:  427 AGCGGGRDP----LSVTCNCKKSKCLKLYCECFQRQQYCNGCNCVECLNTERTEDLRQLAIQGTIERNPQAFVSKFERRAG-KRSHNAGCNCKKSACLKKYCECFQAGVACGTNCKCVNCKNYEGAAGGRKRRAVESPAA 561          
BLAST of mRNA_H-paniculata_contig3174.8549.1 vs. uniprot
Match: A0A6H5KNX0_9PHAE (CRC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNX0_9PHAE)

HSP 1 Score: 216 bits (549), Expect = 1.000e-61
Identity = 100/118 (84.75%), Postives = 106/118 (89.83%), Query Frame = 1
Query:  157 TCNCKKSKCLKLYCECFQRKQYCTDCNCKDCCNTPLTEAMRQGAIQSTIERNPSAFVSKFEKRAGGKRAHNAGCNCKKSACLKKYCECFQAGVACGTNCKCSNCKNYEGAAGGRKRRA 510
            TCNCKKSKCLKLYCECFQR+QYC  CNC +C NT  TE +RQ AIQ T+ERNP AFVSKFE+RAG KR+HNAGCNCKKSACLKKYCECFQAGVACGTNCKC NCKNYEGAAGGRKRRA
Sbjct:  679 TCNCKKSKCLKLYCECFQRQQYCKGCNCMECLNTERTEDLRQLAIQGTMERNPQAFVSKFERRAG-KRSHNAGCNCKKSACLKKYCECFQAGVACGTNCKCVNCKNYEGAAGGRKRRA 795          
BLAST of mRNA_H-paniculata_contig3174.8549.1 vs. uniprot
Match: A0A7S3YLM9_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YLM9_HETAK)

HSP 1 Score: 156 bits (395), Expect = 2.560e-45
Identity = 70/111 (63.06%), Postives = 80/111 (72.07%), Query Frame = 1
Query:  142 EGGTTTCNCKKSKCLKLYCECFQRKQYCTDCNCKDCCNTPLTEAMRQGAIQSTIERNPSAFVSKFEKRAGGKRAHNAGCNCKKSACLKKYCECFQAGVACGTNCKCSNCKN 474
            +G    CNCKKSKCLKLYCECF   +YC  CNC DC N P TEA RQ AI++ +ERNP AF SK  + A  K+ H+ GCNCKKS+CLKKYCECFQAGV C   CKC+ C N
Sbjct:   40 DGKKGVCNCKKSKCLKLYCECFAAGKYCGACNCVDCQNAPATEAQRQDAIKAILERNPKAFSSKINREALHKQHHSTGCNCKKSSCLKKYCECFQAGVPCSARCKCAACLN 150          
BLAST of mRNA_H-paniculata_contig3174.8549.1 vs. uniprot
Match: A0A7S2SM18_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SM18_9STRA)

HSP 1 Score: 154 bits (389), Expect = 2.410e-44
Identity = 69/117 (58.97%), Postives = 85/117 (72.65%), Query Frame = 1
Query:  160 CNCKKSKCLKLYCECFQRKQYCTDCNCKDCCNTPLTEAMRQGAIQSTIERNPSAFVSKFEKRAGGKRAHNAGCNCKKSACLKKYCECFQAGVACGTNCKCSNCKNYEGAAGGRKRRA 510
            CNCK SKCLKLYC+CF    YC  CNCKDC N P  EA RQ A QST+E+NP+AF +K +K   G   H++GC+CKKS CLKKYCECF+A V CG  CKC +C+NY G+   ++R+A
Sbjct:   27 CNCKNSKCLKLYCDCFASSIYCNGCNCKDCHNNPEHEAERQDARQSTLEKNPNAFQAKIKKGGQGGSEHSSGCHCKKSKCLKKYCECFEALVFCGEKCKCLDCENYAGSIALQERKA 143          
BLAST of mRNA_H-paniculata_contig3174.8549.1 vs. uniprot
Match: A0A5J4YAE3_9CHLO (CRC domain-containing protein n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4YAE3_9CHLO)

HSP 1 Score: 154 bits (389), Expect = 5.790e-42
Identity = 67/114 (58.77%), Postives = 80/114 (70.18%), Query Frame = 1
Query:  160 CNCKKSKCLKLYCECFQRKQYCTDCNCKDCCNTPLTEAMRQGAIQSTIERNPSAFVSKFEKRAG------GKRAHNAGCNCKKSACLKKYCECFQAGVACGTNCKCSNCKNYEG 483
            CNCK S+CLKLYCECF   +YC  CNC +CCN    E+ RQ A+++ +ERNP+AF  K +  A       G   HN GCNCKKS CLKKYCECFQAG+ CG NCKC +CKN+EG
Sbjct:   63 CNCKNSRCLKLYCECFASGRYCDGCNCVNCCNNMENESTRQSAVEAILERNPNAFRPKIQAGASEEGTVAGTARHNKGCNCKKSGCLKKYCECFQAGIYCGDNCKCIDCKNFEG 176          
BLAST of mRNA_H-paniculata_contig3174.8549.1 vs. uniprot
Match: A0A7S3AJR0_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3AJR0_9EUKA)

HSP 1 Score: 147 bits (372), Expect = 8.160e-42
Identity = 69/128 (53.91%), Postives = 81/128 (63.28%), Query Frame = 1
Query:  160 CNCKKSKCLKLYCECFQRKQYCTDCNCKDCCNTPLTEAMRQGAIQSTIERNPSAFVSKFEKRAGGKRAHNAGCNCKKSACLKKYCECFQAGVACGTNCKCSNCKNYEGAAGGRKRR--APDPSVASQV 537
            CNCK S+CLKLYCECF   QYC  CNC+ C N P  +  R+ AI+ST+ERNP AF  K        R H  GC+C+KS+CLKKYCECFQ G+ C   CKC+ CKNYE   G    R  AP  S A+ V
Sbjct:    7 CNCKNSRCLKLYCECFASGQYCLACNCQSCHNNPENDDKRKRAIKSTLERNPQAFRPKINHAGDTLRRHTRGCHCRKSSCLKKYCECFQGGIKCTAMCKCAGCKNYEDLDGSAPARNEAPSTSPAAAV 134          
BLAST of mRNA_H-paniculata_contig3174.8549.1 vs. uniprot
Match: A0A7S3FM75_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Chloropicon roscoffensis TaxID=1461544 RepID=A0A7S3FM75_9CHLO)

HSP 1 Score: 150 bits (379), Expect = 4.290e-41
Identity = 69/126 (54.76%), Postives = 86/126 (68.25%), Query Frame = 1
Query:  160 CNCKKSKCLKLYCECFQRKQYCTDCNCKDCCNTPLTEAMRQGAIQSTIERNPSAFVSKFEKRAGGKRA-----HNAGCNCKKSACLKKYCECFQAGVACGTNCKCSNCKNYEGAAGGRKRRAPDPS 522
            CNCK+S+CLKLYCECF    YC DCNC+DC N    E +RQ A+++T+ERNP AF  K +  + G        HN GCNCK+S CLK+YCECFQA + C  NC+C +CKNYEG+A  R + A  PS
Sbjct:  109 CNCKQSRCLKLYCECFASGIYCQDCNCQDCYNNKEHEQVRQEAVEATLERNPDAFRPKIQSMSPGMSVQDSLKHNKGCNCKRSFCLKRYCECFQANIFCSENCRCKDCKNYEGSAS-RLQLAQSPS 233          
BLAST of mRNA_H-paniculata_contig3174.8549.1 vs. uniprot
Match: A0A0M0JDD9_9EUKA (Tesmin tso1-like cxc domain-containing protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JDD9_9EUKA)

HSP 1 Score: 147 bits (372), Expect = 7.950e-41
Identity = 68/126 (53.97%), Postives = 79/126 (62.70%), Query Frame = 1
Query:  157 TCNCKKSKCLKLYCECFQRKQYCTDCNCKDCCNTPLTEAMRQGAIQSTIERNPSAFVSKFEKRAGGKRAHNAGCNCKKSACLKKYCECFQAGVACGTNCKCSNCKNYEGAAGGRKRRAPDPSVASQ 534
            TCNC+ S+CLKLYCECF   QYC  CNC+ C N P  + +R+ AI+ST+ERN  AF  K         AHN GCNCKKS CLKKYCECFQAG+ C   CKC NC N      G+K   P P+   Q
Sbjct:   36 TCNCRNSRCLKLYCECFASGQYCYGCNCQSCFNNPENDELRKQAIESTLERNQQAFRPKISSTEQASSAHNRGCNCKKSGCLKKYCECFQAGIKCADTCKCVNCLNRNE---GQKVVLPSPAPKRQ 158          
BLAST of mRNA_H-paniculata_contig3174.8549.1 vs. uniprot
Match: A0A2P6VRN3_9CHLO (Tesmin TSO1-like CXC 5 n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VRN3_9CHLO)

HSP 1 Score: 154 bits (390), Expect = 8.720e-41
Identity = 70/117 (59.83%), Postives = 81/117 (69.23%), Query Frame = 1
Query:  145 GGTTTCNCKKSKCLKLYCECFQRKQYCTDCNCKDCCNTPLTEAMRQGAIQSTIERNPSAFVSKF----EKRAGGKRAHNAGCNCKKSACLKKYCECFQAGVACGTNCKCSNCKNYEG 483
            GG   CNCK S+CLKLYCECF   +YC  CNC +C N    E+ RQ A+++ +ERNP+AF  K     E R  G   HN GCNCKKS CLKKYCECFQAG+AC  NCKC +CKNYEG
Sbjct:  117 GGKRHCNCKNSRCLKLYCECFASGRYCDACNCLNCHNNRAHESTRQAAVEAILERNPNAFRPKIAGGSEGRHSGGARHNKGCNCKKSGCLKKYCECFQAGIACSDNCKCLDCKNYEG 233          
BLAST of mRNA_H-paniculata_contig3174.8549.1 vs. uniprot
Match: A0A087SIS7_AUXPR (Lin-54-like protein n=2 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A087SIS7_AUXPR)

HSP 1 Score: 150 bits (379), Expect = 1.010e-40
Identity = 65/114 (57.02%), Postives = 78/114 (68.42%), Query Frame = 1
Query:  160 CNCKKSKCLKLYCECFQRKQYCTDCNCKDCCNTPLTEAMRQGAIQSTIERNPSAFVSKF------EKRAGGKRAHNAGCNCKKSACLKKYCECFQAGVACGTNCKCSNCKNYEG 483
            CNCK S+CLKLYCECF   +YC  CNC  CCN    E +RQ A+++ ++RNP+AF  K       E  + G   HN GCNCKKS CLKKYCECFQAG+ C  NCKC +CKNY+G
Sbjct:   40 CNCKNSRCLKLYCECFASGRYCDGCNCVGCCNNQQNEGVRQSAVEAILDRNPNAFRPKIAGDVTEEGASLGAARHNKGCNCKKSGCLKKYCECFQAGIFCSENCKCCDCKNYDG 153          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3174.8549.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FRF0_ECTSI5.270e-6477.14Tesmin-like, animal TCX proteins are associated wi... [more]
A0A6H5KNX0_9PHAE1.000e-6184.75CRC domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A7S3YLM9_HETAK2.560e-4563.06Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S2SM18_9STRA2.410e-4458.97Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A5J4YAE3_9CHLO5.790e-4258.77CRC domain-containing protein n=1 Tax=Trebouxia sp... [more]
A0A7S3AJR0_9EUKA8.160e-4253.91Hypothetical protein (Fragment) n=1 Tax=Haptolina ... [more]
A0A7S3FM75_9CHLO4.290e-4154.76Hypothetical protein (Fragment) n=1 Tax=Chloropico... [more]
A0A0M0JDD9_9EUKA7.950e-4153.97Tesmin tso1-like cxc domain-containing protein n=1... [more]
A0A2P6VRN3_9CHLO8.720e-4159.83Tesmin TSO1-like CXC 5 n=1 Tax=Micractinium conduc... [more]
A0A087SIS7_AUXPR1.010e-4057.02Lin-54-like protein n=2 Tax=Auxenochlorella protot... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3174contigH-paniculata_contig3174:575..1532 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score219.2
Seed ortholog evalue1.6e-54
Seed eggNOG ortholog2880.D7FRF0
KEGG koko:K11600,ko:K21776
KEGG Pathwayko03018,ko04218,map03018,map04218
KEGG ModuleM00390,M00391
Hectar predicted targeting categoryother localisation
EggNOG free text desc.DNA-binding transcription factor activity
EggNOG OGsKOG1171@1,KOG1171@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03019
Exons2
Model size537
Cds size537
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929977.4536548-CDS-H-paniculata_contig3174:574..8291622929977.4536548-CDS-H-paniculata_contig3174:574..829Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3174 575..829 -
1691481094.9517982-CDS-H-paniculata_contig3174:574..8291691481094.9517982-CDS-H-paniculata_contig3174:574..829Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3174 575..829 -
1622929977.4678698-CDS-H-paniculata_contig3174:1250..15321622929977.4678698-CDS-H-paniculata_contig3174:1250..1532Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3174 1251..1532 -
1691481094.9661987-CDS-H-paniculata_contig3174:1250..15321691481094.9661987-CDS-H-paniculata_contig3174:1250..1532Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3174 1251..1532 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3174.8549.1prot_H-paniculata_contig3174.8549.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3174 575..1532 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3174.8549.1

>prot_H-paniculata_contig3174.8549.1 ID=prot_H-paniculata_contig3174.8549.1|Name=mRNA_H-paniculata_contig3174.8549.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=179bp
VPAAAATTAAGARASPTLIFATTPGRGGGNIAVRDGAGEGEGRHPGGEGG
TTTCNCKKSKCLKLYCECFQRKQYCTDCNCKDCCNTPLTEAMRQGAIQST
IERNPSAFVSKFEKRAGGKRAHNAGCNCKKSACLKKYCECFQAGVACGTN
CKCSNCKNYEGAAGGRKRRAPDPSVASQV
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mRNA from alignment at H-paniculata_contig3174:575..1532-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3174.8549.1 ID=mRNA_H-paniculata_contig3174.8549.1|Name=mRNA_H-paniculata_contig3174.8549.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=958bp|location=Sequence derived from alignment at H-paniculata_contig3174:575..1532- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTCCCGCTGCCGCTGCCACCACCGCCGCAGGAGCCCGTGCGTCGCCGAC TCTAATCTTCGCCACGACTCCAGGACGCGGCGGCGGGAATATCGCGGTGC GGGACGGGGCGGGGGAAGGGGAGGGGCGGCATCCCGGGGGTGAGGGCGGG ACGACGACGTGTAACTGCAAGAAGTCGAAGTGCTTGAAGCTTTACTGCGA GTGCTTCCAACGCAAGCAATACTGCACGGACTGCAACTGCAAGGACTGCT GCAACACACCTCTCACGGAAGCCATGCGGCAGGTACGTGTTGCGATAGTT CTGTAGTCTTTGAGGCGGTTTGGGGCGGGCGTCCTGCGTGGGCAGGGGCG GGCGGATGGCAGTTGTTATGAGGCGTTTTTTTTGTAGCAGTAGGTGTAAT TGTGCATTTCGAATTTGTCCATGGAGTGGTTCCATGTTTATGGGAGTTTA TTTTCATGAGATCCGGGTGGATTGAAAATCACATTTCTATCTGCGTGTTT GCCCATGTAGGACTGTTACATTGGATGCGTCTAAAGTTTCGGCATCCAAA GCTCGTCTGTATCTATGTTTTGCTTAGAAAATAAGACGAAGCTGACCGTT GACTTTGTGTGTGTGTGTGTGTATGTGTGTGTATGTGTATGTGTGTGTGT GTGTGTGCGCGCGTGTATGTTGGGCTTTTTTCGTTCACGAAATAATGCAA CAGGGTGCTATCCAGAGCACGATCGAGCGCAACCCGTCCGCCTTCGTCAG CAAATTCGAGAAGCGCGCCGGCGGCAAACGCGCGCACAACGCCGGATGCA ACTGCAAGAAGTCTGCCTGCCTCAAGAAGTACTGCGAGTGCTTTCAGGCA GGCGTGGCGTGCGGGACCAATTGCAAATGCAGTAATTGCAAGAACTACGA AGGTGCCGCCGGCGGGCGTAAGCGGCGAGCGCCGGACCCCTCCGTTGCTT CTCAGGTC
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Coding sequence (CDS) from alignment at H-paniculata_contig3174:575..1532-

>mRNA_H-paniculata_contig3174.8549.1 ID=mRNA_H-paniculata_contig3174.8549.1|Name=mRNA_H-paniculata_contig3174.8549.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1074bp|location=Sequence derived from alignment at H-paniculata_contig3174:575..1532- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTCCCGCTGCCGCTGCCACCACCGCCGCAGGAGCCCGTGCGTCGCCGAC
TCTAATCTTCGCCACGACTCCAGGACGCGGCGGCGGGAATATCGCGGTGC
GGGACGGGGCGGGGGAAGGGGAGGGGCGGCATCCCGGGGGTGAGGGCGGG
ACGACGACGTGTAACTGCAAGAAGTCGAAGTGCTTGAAGCTTTACTGCGA
GTGCTTCCAACGCAAGCAATACTGCACGGACTGCAACTGCAAGGACTGCT
GCAACACACCTCTCACGGAAGCCATGCGGCAGGTTCCCGCTGCCGCTGCC
ACCACCGCCGCAGGAGCCCGTGCGTCGCCGACTCTAATCTTCGCCACGAC
TCCAGGACGCGGCGGCGGGAATATCGCGGTGCGGGACGGGGCGGGGGAAG
GGGAGGGGCGGCATCCCGGGGGTGAGGGCGGGACGACGACGTGTAACTGC
AAGAAGTCGAAGTGCTTGAAGCTTTACTGCGAGTGCTTCCAACGCAAGCA
ATACTGCACGGACTGCAACTGCAAGGACTGCTGCAACACACCTCTCACGG
AAGCCATGCGGCAGGGTGCTATCCAGAGCACGATCGAGCGCAACCCGTCC
GCCTTCGTCAGCAAATTCGAGAAGCGCGCCGGCGGCAAACGCGCGCACAA
CGCCGGATGCAACTGCAAGAAGTCTGCCTGCCTCAAGAAGTACTGCGAGT
GCTTTCAGGCAGGCGTGGCGTGCGGGACCAATTGCAAATGCAGTAATTGC
AAGAACTACGAAGGTGCCGCCGGCGGGCGTAAGCGGCGAGCGCCGGACCC
CTCCGTTGCTTCTCAGGTCGGTGCTATCCAGAGCACGATCGAGCGCAACC
CGTCCGCCTTCGTCAGCAAATTCGAGAAGCGCGCCGGCGGCAAACGCGCG
CACAACGCCGGATGCAACTGCAAGAAGTCTGCCTGCCTCAAGAAGTACTG
CGAGTGCTTTCAGGCAGGCGTGGCGTGCGGGACCAATTGCAAATGCAGTA
ATTGCAAGAACTACGAAGGTGCCGCCGGCGGGCGTAAGCGGCGAGCGCCG
GACCCCTCCGTTGCTTCTCAGGTC
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