prot_H-paniculata_contig31620.8528.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig31620.8528.1
Unique Nameprot_H-paniculata_contig31620.8528.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length39
Homology
BLAST of mRNA_H-paniculata_contig31620.8528.1 vs. uniprot
Match: A0A7S2TT53_9EUKA (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2TT53_9EUKA)

HSP 1 Score: 57.0 bits (136), Expect = 2.630e-9
Identity = 22/38 (57.89%), Postives = 29/38 (76.32%), Query Frame = 0
Query:    1 MSLAWARIFDGFAPDPGDYAGAAVALVGVGIMWWYPRQ 38
            MS  WA IFDG+ PD GDY G+A+ALVGVG++ ++P  
Sbjct:   79 MSFGWAAIFDGYKPDMGDYIGSAIALVGVGVVLFWPSS 116          
BLAST of mRNA_H-paniculata_contig31620.8528.1 vs. uniprot
Match: A0A1H1ECA7_9MICC (UPF0060 membrane protein SAMN04489742_2866 n=3 Tax=Arthrobacter TaxID=1663 RepID=A0A1H1ECA7_9MICC)

HSP 1 Score: 52.8 bits (125), Expect = 1.030e-7
Identity = 21/37 (56.76%), Postives = 26/37 (70.27%), Query Frame = 0
Query:    2 SLAWARIFDGFAPDPGDYAGAAVALVGVGIMWWYPRQ 38
            SLAW  + DGF PD  DY GAA+ALVGV ++ + PR 
Sbjct:   74 SLAWGMVMDGFRPDRWDYVGAAIALVGVAVLMYAPRD 110          
BLAST of mRNA_H-paniculata_contig31620.8528.1 vs. uniprot
Match: A0A2K3DT52_CHLRE (Uncharacterized protein n=2 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A0A2K3DT52_CHLRE)

HSP 1 Score: 53.1 bits (126), Expect = 1.600e-7
Identity = 21/37 (56.76%), Postives = 26/37 (70.27%), Query Frame = 0
Query:    1 MSLAWARIFDGFAPDPGDYAGAAVALVGVGIMWWYPR 37
            MS  W    DG  PD GD+AGAA+AL GVG+ W++PR
Sbjct:  118 MSYGWGWAVDGDKPDTGDWAGAAIALAGVGLAWFWPR 154          
BLAST of mRNA_H-paniculata_contig31620.8528.1 vs. uniprot
Match: A0A2G5PBS0_9MYCO (UPF0060 membrane protein CQY22_008575 n=1 Tax=Mycolicibacterium brumae TaxID=85968 RepID=A0A2G5PBS0_9MYCO)

HSP 1 Score: 52.0 bits (123), Expect = 1.980e-7
Identity = 20/37 (54.05%), Postives = 26/37 (70.27%), Query Frame = 0
Query:    2 SLAWARIFDGFAPDPGDYAGAAVALVGVGIMWWYPRQ 38
            SLAW  + DGF PD  DY GAA+ L+GVG++ + PR 
Sbjct:   74 SLAWGMVMDGFRPDRWDYTGAAICLLGVGVIMYAPRS 110          
BLAST of mRNA_H-paniculata_contig31620.8528.1 vs. uniprot
Match: A0A7R9V7B8_9CHLO (Hypothetical protein n=1 Tax=Chlamydomonas euryale TaxID=1486919 RepID=A0A7R9V7B8_9CHLO)

HSP 1 Score: 53.9 bits (128), Expect = 2.570e-7
Identity = 22/38 (57.89%), Postives = 26/38 (68.42%), Query Frame = 0
Query:    1 MSLAWARIFDGFAPDPGDYAGAAVALVGVGIMWWYPRQ 38
            MS AW  I DG  PD GD+ GAA+AL GV I W++PR 
Sbjct:  267 MSYAWGWIIDGDRPDVGDWVGAAIALAGVAIAWFWPRS 304          
BLAST of mRNA_H-paniculata_contig31620.8528.1 vs. uniprot
Match: UPI001BDBB67A (YnfA family protein n=1 Tax=Pseudonocardia sp. H11422 TaxID=2835866 RepID=UPI001BDBB67A)

HSP 1 Score: 51.6 bits (122), Expect = 2.740e-7
Identity = 22/36 (61.11%), Postives = 26/36 (72.22%), Query Frame = 0
Query:    2 SLAWARIFDGFAPDPGDYAGAAVALVGVGIMWWYPR 37
            SLAW  + DGF PD  DY GAA+ LVGVGI+ + PR
Sbjct:   73 SLAWGIVVDGFRPDRFDYVGAAICLVGVGIIMYAPR 108          
BLAST of mRNA_H-paniculata_contig31620.8528.1 vs. uniprot
Match: I0YX84_COCSC (UPF0060-domain-containing protein (Fragment) n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0YX84_COCSC)

HSP 1 Score: 50.1 bits (118), Expect = 6.430e-7
Identity = 20/37 (54.05%), Postives = 26/37 (70.27%), Query Frame = 0
Query:    1 MSLAWARIFDGFAPDPGDYAGAAVALVGVGIMWWYPR 37
            +S AW  +FD   PD GDY GAA+AL GV + ++YPR
Sbjct:   48 LSYAWGWVFDKEPPDAGDYVGAAIALTGVVVAFFYPR 84          
BLAST of mRNA_H-paniculata_contig31620.8528.1 vs. uniprot
Match: Y3252_MYCS2 (UPF0060 membrane protein MSMEG_3252/MSMEI_3169 n=4 Tax=Mycobacteriaceae TaxID=1762 RepID=Y3252_MYCS2)

HSP 1 Score: 50.4 bits (119), Expect = 7.610e-7
Identity = 23/36 (63.89%), Postives = 26/36 (72.22%), Query Frame = 0
Query:    2 SLAWARIFDGFAPDPGDYAGAAVALVGVGIMWWYPR 37
            SL W  I DGF PD  D AGAAVALVGVG++ + PR
Sbjct:   73 SLLWGMIADGFRPDRWDVAGAAVALVGVGLIMYAPR 108          
BLAST of mRNA_H-paniculata_contig31620.8528.1 vs. uniprot
Match: A0A848DDK4_9PSEU (UPF0060 membrane protein HF519_03420 n=2 Tax=Pseudonocardia bannensis TaxID=630973 RepID=A0A848DDK4_9PSEU)

HSP 1 Score: 50.4 bits (119), Expect = 7.610e-7
Identity = 21/36 (58.33%), Postives = 26/36 (72.22%), Query Frame = 0
Query:    2 SLAWARIFDGFAPDPGDYAGAAVALVGVGIMWWYPR 37
            SLAW  + DGF PD  DY GAA+ L+GVGI+ + PR
Sbjct:   72 SLAWGIVADGFRPDRFDYLGAAICLIGVGIIMYAPR 107          
BLAST of mRNA_H-paniculata_contig31620.8528.1 vs. uniprot
Match: A0A7G6WZQ4_9ACTN (UPF0060 membrane protein F1D05_18060 n=5 Tax=Actinomycetia TaxID=1760 RepID=A0A7G6WZQ4_9ACTN)

HSP 1 Score: 50.1 bits (118), Expect = 1.120e-6
Identity = 21/36 (58.33%), Postives = 26/36 (72.22%), Query Frame = 0
Query:    2 SLAWARIFDGFAPDPGDYAGAAVALVGVGIMWWYPR 37
            SL W  +FDGF PD  D AGAAV L+GVG++ + PR
Sbjct:   74 SLLWGVLFDGFRPDRWDLAGAAVCLIGVGLIMYAPR 109          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig31620.8528.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2TT53_9EUKA2.630e-957.89Hypothetical protein n=1 Tax=Lotharella oceanica T... [more]
A0A1H1ECA7_9MICC1.030e-756.76UPF0060 membrane protein SAMN04489742_2866 n=3 Tax... [more]
A0A2K3DT52_CHLRE1.600e-756.76Uncharacterized protein n=2 Tax=Chlamydomonas rein... [more]
A0A2G5PBS0_9MYCO1.980e-754.05UPF0060 membrane protein CQY22_008575 n=1 Tax=Myco... [more]
A0A7R9V7B8_9CHLO2.570e-757.89Hypothetical protein n=1 Tax=Chlamydomonas euryale... [more]
UPI001BDBB67A2.740e-761.11YnfA family protein n=1 Tax=Pseudonocardia sp. H11... [more]
I0YX84_COCSC6.430e-754.05UPF0060-domain-containing protein (Fragment) n=1 T... [more]
Y3252_MYCS27.610e-763.89UPF0060 membrane protein MSMEG_3252/MSMEI_3169 n=4... [more]
A0A848DDK4_9PSEU7.610e-758.33UPF0060 membrane protein HF519_03420 n=2 Tax=Pseud... [more]
A0A7G6WZQ4_9ACTN1.120e-658.33UPF0060 membrane protein F1D05_18060 n=5 Tax=Actin... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003844Uncharacterised protein family UPF0060PFAMPF02694UPF0060coord: 2..37
e-value: 2.5E-5
score: 24.4
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 19..35
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 36..38
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..18
NoneNo IPR availableTMHMMTMhelixcoord: 20..37

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig31620contigH-paniculata_contig31620:1359..1475 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig31620.8528.1mRNA_H-paniculata_contig31620.8528.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig31620 374..1685 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig31620.8528.1 ID=prot_H-paniculata_contig31620.8528.1|Name=mRNA_H-paniculata_contig31620.8528.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=39bp
MSLAWARIFDGFAPDPGDYAGAAVALVGVGIMWWYPRQ*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003844UPF0060