mRNA_H-paniculata_contig31620.8528.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig31620.8528.1
Unique NamemRNA_H-paniculata_contig31620.8528.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig31620.8528.1 vs. uniprot
Match: A0A6H5K7I9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7I9_9PHAE)

HSP 1 Score: 191 bits (486), Expect = 4.560e-60
Identity = 83/108 (76.85%), Postives = 89/108 (82.41%), Query Frame = 1
Query:    7 SIAVFVLAGLCEIGGGWLIWQAIREKKTNWWIFPGALLLAVYGFVPAALLPDTSSAEFGRAFAVYGGVFIAMSLAWARIFDGFAPDPGDYAGAAVALVGVGIMWWYPR 330
            SIAVFVLAGLCEIGGGWL+WQA+REK+  WWI PG LLLA YGFV   LLPD SSAEFGRAFAVYGG+FIAMSL W  +FDGF  D GDYAGA V L GV +MWWYPR
Sbjct:    9 SIAVFVLAGLCEIGGGWLVWQAVREKRPRWWIIPGVLLLAAYGFVTPGLLPDVSSAEFGRAFAVYGGIFIAMSLGWGAVFDGFRADAGDYAGACVVLAGVAVMWWYPR 116          
BLAST of mRNA_H-paniculata_contig31620.8528.1 vs. uniprot
Match: A0A7S2TT53_9EUKA (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2TT53_9EUKA)

HSP 1 Score: 138 bits (348), Expect = 4.560e-39
Identity = 60/109 (55.05%), Postives = 79/109 (72.48%), Query Frame = 1
Query:    1 VRSIAVFVLAGLCEIGGGWLIWQAIREKKTNWWIFPGALLLAVYGFVPAALLPDTSSAEFGRAFAVYGGVFIAMSLAWARIFDGFAPDPGDYAGAAVALVGVGIMWWYP 327
            V   A+F+ AGL EIGGGW++WQA+RE K  WW   G+++L  YGF+P     D    +FG+ +AVYGGVFIAMS  WA IFDG+ PD GDY G+A+ALVGVG++ ++P
Sbjct:   10 VHVAALFIFAGLAEIGGGWMVWQAVREGKPWWWALIGSIILVGYGFIPPLQPLD----DFGKLYAVYGGVFIAMSFGWAAIFDGYKPDMGDYIGSAIALVGVGVVLFWP 114          
BLAST of mRNA_H-paniculata_contig31620.8528.1 vs. uniprot
Match: A0A2V0NLL9_9CHLO (Uncharacterized protein n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0NLL9_9CHLO)

HSP 1 Score: 135 bits (339), Expect = 1.660e-37
Identity = 58/109 (53.21%), Postives = 77/109 (70.64%), Query Frame = 1
Query:    7 SIAVFVLAGLCEIGGGWLIWQAIREKKTNWWIFPGALLLAVYGFVPAALLPDTSSAEFGRAFAVYGGVFIAMSLAWARIFDGFAPDPGDYAGAAVALVGVGIMWWYPRQ 333
            ++ +F+ AGL EIGGGWL+WQ +R+ +  WWI  G  +LA YGF+P    P   +A FGR +AVYGGVFIA+S AW  + DG  PD GD+AG AVAL GV + W++PR+
Sbjct:   29 TLGIFLFAGLAEIGGGWLVWQGMRKGRPWWWIVGGVAVLACYGFIPTLQPP---AASFGRVYAVYGGVFIALSYAWGAVLDGDRPDAGDWAGGAVALAGVVLAWFWPRR 134          
BLAST of mRNA_H-paniculata_contig31620.8528.1 vs. uniprot
Match: A0A518L6Y1_9BACT (UPF0060 membrane protein TBK1r_47860 n=1 Tax=Planctomycetes bacterium TBK1r TaxID=2527963 RepID=A0A518L6Y1_9BACT)

HSP 1 Score: 131 bits (330), Expect = 1.970e-36
Identity = 59/109 (54.13%), Postives = 76/109 (69.72%), Query Frame = 1
Query:    4 RSIAVFVLAGLCEIGGGWLIWQAIREKKTNWWIFPGALLLAVYGFVPAALLPDTSSAEFGRAFAVYGGVFIAMSLAWARIFDGFAPDPGDYAGAAVALVGVGIMWWYPR 330
            RS+ +FVLAGLCEIGGGWL+WQ++RE K  WW   G ++L +YG     ++P   +A FGR +AVYGG FI +SL W   FDG  PD  D  GAA+ALVGV +M ++PR
Sbjct:    8 RSLILFVLAGLCEIGGGWLVWQSLREHKPAWWGVSGGVILMLYG-----VIPTLQTAHFGRIYAVYGGFFIVLSLLWGWYFDGDRPDRFDVIGAAIALVGVCVMMYWPR 111          
BLAST of mRNA_H-paniculata_contig31620.8528.1 vs. uniprot
Match: UPI00058BF58C (YnfA family protein n=1 Tax=Tessaracoccus massiliensis TaxID=1522311 RepID=UPI00058BF58C)

HSP 1 Score: 130 bits (327), Expect = 5.600e-36
Identity = 62/109 (56.88%), Postives = 74/109 (67.89%), Query Frame = 1
Query:    4 RSIAVFVLAGLCEIGGGWLIWQAIREKKTNWWIFPGALLLAVYGFVPAALLPDTSSAEFGRAFAVYGGVFIAMSLAWARIFDGFAPDPGDYAGAAVALVGVGIMWWYPR 330
            +SIA+FVLA L EIGG WL+WQ +RE K  WWI  G + L +YGFV A L PD   A FGR  A YGGVF+A SLAW  + DGF PD  D  GAA+ LVGV ++ + PR
Sbjct:    5 KSIALFVLAALAEIGGAWLVWQGVREGKGAWWIGAGVIALGLYGFV-ATLQPD---ANFGRILAAYGGVFVAGSLAWGMVVDGFRPDRWDVIGAAICLVGVAVIMYAPR 109          
BLAST of mRNA_H-paniculata_contig31620.8528.1 vs. uniprot
Match: A0A7W7S3S4_9ACTN (UPF0060 membrane protein FHR32_007367 n=1 Tax=Streptosporangium album TaxID=47479 RepID=A0A7W7S3S4_9ACTN)

HSP 1 Score: 128 bits (322), Expect = 3.010e-35
Identity = 61/110 (55.45%), Postives = 75/110 (68.18%), Query Frame = 1
Query:    1 VRSIAVFVLAGLCEIGGGWLIWQAIREKKTNWWIFPGALLLAVYGFVPAALLPDTSSAEFGRAFAVYGGVFIAMSLAWARIFDGFAPDPGDYAGAAVALVGVGIMWWYPR 330
            VRS+ +FV+A L EIGG WLIWQ +RE +  WWI  G + L +YGFV A L PD   A FGR  A YGGVF+A SLAW  + DGF PD  D AGAA+ L+GV ++ + PR
Sbjct:    4 VRSLVLFVVAALAEIGGAWLIWQGVREHRGAWWIGAGIVALGLYGFV-ATLQPD---AGFGRILAAYGGVFVAGSLAWGMVADGFRPDRWDLAGAAICLIGVAVIMYAPR 109          
BLAST of mRNA_H-paniculata_contig31620.8528.1 vs. uniprot
Match: A0A7S1SWG8_9CHLO (Hypothetical protein n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1SWG8_9CHLO)

HSP 1 Score: 130 bits (326), Expect = 3.220e-35
Identity = 56/108 (51.85%), Postives = 75/108 (69.44%), Query Frame = 1
Query:    7 SIAVFVLAGLCEIGGGWLIWQAIREKKTNWWIFPGALLLAVYGFVPAALLPDTSSAEFGRAFAVYGGVFIAMSLAWARIFDGFAPDPGDYAGAAVALVGVGIMWWYPR 330
            S+A+F+ A L EIGGGWL+WQA+RE K +WW   G+L+L +YGF+P     D    EFGR +AVYGGVFI +S  W  + DG   D GD+ G+ VA++GV I W++PR
Sbjct:   53 SLALFLAAALAEIGGGWLVWQAVREGKPSWWALLGSLVLVLYGFIPTWQPVD----EFGRTYAVYGGVFIVLSYLWGWLVDGMRMDAGDWIGSIVAVIGVAIAWFWPR 156          
BLAST of mRNA_H-paniculata_contig31620.8528.1 vs. uniprot
Match: A0A8J9SFG2_9CHLO (UPF0060 membrane protein YfjF n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9SFG2_9CHLO)

HSP 1 Score: 129 bits (324), Expect = 7.470e-35
Identity = 59/110 (53.64%), Postives = 77/110 (70.00%), Query Frame = 1
Query:    1 VRSIAVFVLAGLCEIGGGWLIWQAIREKKTNWWIFPGALLLAVYGFVPAALLPDTSSAEFGRAFAVYGGVFIAMSLAWARIFDGFAPDPGDYAGAAVALVGVGIMWWYPR 330
            V +I +F+ AGLCEIGGGWL+WQA+RE K  +W   G+L+L  YGF+P A      ++ FGR +AVYGG FI +S AW  +FD   PD GDY GAA+AL+GV +  +YPR
Sbjct:   59 VLAIFLFLAAGLCEIGGGWLVWQAVREGKPFYWGVAGSLVLVGYGFLPTA----QPTSNFGRIYAVYGGFFIVLSYAWGWVFDKERPDTGDYVGAAIALIGVIVALFYPR 164          
BLAST of mRNA_H-paniculata_contig31620.8528.1 vs. uniprot
Match: A0A835XSW3_9CHLO (Uncharacterized protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835XSW3_9CHLO)

HSP 1 Score: 129 bits (324), Expect = 8.150e-35
Identity = 57/108 (52.78%), Postives = 77/108 (71.30%), Query Frame = 1
Query:    7 SIAVFVLAGLCEIGGGWLIWQAIREKKTNWWIFPGALLLAVYGFVPAALLPDTSSAEFGRAFAVYGGVFIAMSLAWARIFDGFAPDPGDYAGAAVALVGVGIMWWYPR 330
            ++ VF+LAGL EIGGGWL+WQ IR KK  +++  GA++L  YGF+P  L P+   A F R +AVYGGVFI MS +W  + DG  PD GD+ G+A+AL GV + W++PR
Sbjct:   62 TLGVFILAGLAEIGGGWLVWQTIRNKKPWYYMVCGAIVLVAYGFIPT-LQPE--GASFARVYAVYGGVFIVMSYSWGWVVDGDRPDTGDWVGSAIALAGVALAWFWPR 166          
BLAST of mRNA_H-paniculata_contig31620.8528.1 vs. uniprot
Match: A0A150G6X1_GONPE (Uncharacterized protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150G6X1_GONPE)

HSP 1 Score: 127 bits (320), Expect = 9.770e-35
Identity = 58/109 (53.21%), Postives = 75/109 (68.81%), Query Frame = 1
Query:    7 SIAVFVLAGLCEIGGGWLIWQAIREKKTNWWIFPGALLLAVYGFVPAALLPDTSSAEFGRAFAVYGGVFIAMSLAWARIFDGFAPDPGDYAGAAVALVGVGIMWWYPRQ 333
            ++ VFVLAGL EIGGGWL+WQA+R KK  ++   GAL+L  YG +P  L PD   A F R +AVYGG+FI MS  W    DG  PD GD+ G+A+AL GV + W++PR+
Sbjct:   21 TLGVFVLAGLAEIGGGWLVWQAVRNKKGWYYFVGGALVLVAYGVIPT-LQPD--GATFARVYAVYGGIFIVMSYGWGWAVDGDRPDRGDWVGSAIALAGVAVAWFWPRR 126          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig31620.8528.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K7I9_9PHAE4.560e-6076.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2TT53_9EUKA4.560e-3955.05Hypothetical protein n=1 Tax=Lotharella oceanica T... [more]
A0A2V0NLL9_9CHLO1.660e-3753.21Uncharacterized protein n=1 Tax=Raphidocelis subca... [more]
A0A518L6Y1_9BACT1.970e-3654.13UPF0060 membrane protein TBK1r_47860 n=1 Tax=Planc... [more]
UPI00058BF58C5.600e-3656.88YnfA family protein n=1 Tax=Tessaracoccus massilie... [more]
A0A7W7S3S4_9ACTN3.010e-3555.45UPF0060 membrane protein FHR32_007367 n=1 Tax=Stre... [more]
A0A7S1SWG8_9CHLO3.220e-3551.85Hypothetical protein n=1 Tax=Tetraselmis chuii Tax... [more]
A0A8J9SFG2_9CHLO7.470e-3553.64UPF0060 membrane protein YfjF n=1 Tax=Coccomyxa sp... [more]
A0A835XSW3_9CHLO8.150e-3552.78Uncharacterized protein n=1 Tax=Edaphochlamys deba... [more]
A0A150G6X1_GONPE9.770e-3553.21Uncharacterized protein n=1 Tax=Gonium pectorale T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig31620contigH-paniculata_contig31620:374..1685 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionUncharacterised protein family UPF0060
Ec32 orthologEc-00_011160.1
Exons2
Model size546
Cds size117
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig31620.8528.1prot_H-paniculata_contig31620.8528.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig31620 1359..1475 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929974.6663888-UTR-H-paniculata_contig31620:373..4651622929974.6663888-UTR-H-paniculata_contig31620:373..465Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig31620 374..465 +
1691481093.7522767-UTR-H-paniculata_contig31620:373..4651691481093.7522767-UTR-H-paniculata_contig31620:373..465Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig31620 374..465 +
1622929974.6825814-UTR-H-paniculata_contig31620:1231..13581622929974.6825814-UTR-H-paniculata_contig31620:1231..1358Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig31620 1232..1358 +
1691481093.7609878-UTR-H-paniculata_contig31620:1231..13581691481093.7609878-UTR-H-paniculata_contig31620:1231..1358Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig31620 1232..1358 +
1622929974.7097135-UTR-H-paniculata_contig31620:1475..16851622929974.7097135-UTR-H-paniculata_contig31620:1475..1685Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig31620 1476..1685 +
1691481093.776702-UTR-H-paniculata_contig31620:1475..16851691481093.776702-UTR-H-paniculata_contig31620:1475..1685Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig31620 1476..1685 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929974.6945803-CDS-H-paniculata_contig31620:1358..14751622929974.6945803-CDS-H-paniculata_contig31620:1358..1475Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31620 1359..1475 +
1691481093.7686043-CDS-H-paniculata_contig31620:1358..14751691481093.7686043-CDS-H-paniculata_contig31620:1358..1475Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31620 1359..1475 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig31620.8528.1

>prot_H-paniculata_contig31620.8528.1 ID=prot_H-paniculata_contig31620.8528.1|Name=mRNA_H-paniculata_contig31620.8528.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=39bp
MSLAWARIFDGFAPDPGDYAGAAVALVGVGIMWWYPRQ*
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mRNA from alignment at H-paniculata_contig31620:374..1685+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig31620.8528.1 ID=mRNA_H-paniculata_contig31620.8528.1|Name=mRNA_H-paniculata_contig31620.8528.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1312bp|location=Sequence derived from alignment at H-paniculata_contig31620:374..1685+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGCGATCCATCGCCGTGTTCGTCTTGGCGGGCCTGTGCGAGATCGGTGG CGGGTGGTTAATCTGGCAGGCTATTCGAGAGAAAAAGACAAAGTGAGCCA CAACGCTGCGCTATAAATCTCTCCTGCAGGGCCAATGCTCGTCAGGAAGT AGTCCAATGGCATTATTAGTTTTCGTTTGAAAACCATTAAAGCATTAGCA TAGGCCAGGTTGCATCCGGTAAGCCCTGCAGCCATGTGCTGTTAGGTGCA GCGCAGCAGGTTGTATGAACGGACCGAACCATTCGGATTCATGATCGTTT ATTATTTGGTAAAATCGACAACAAACGGCAGCAACTAATTTTCCCCGTCG ATCTCGTCCTCGAGGGTGGGGGGTGTACATAAAAGATTTTCTTGCAACAC CTCCCTAGATGTATCGCTCCACCCCCCCCGATTTGATCTAATCCTGCCGG TAGGTATACACAACCGAGATTTGAGGCCAGCTACATAGCCTCAGAAGGGG TACGATGAAGTTACTACACCGTTTTTTTTTACAGAGCTACTTCCTGTGGT AAGCGGGTTGACTCGTGAACGAGGCTTGGTGGGATGCATGGGGTACCTTA CTTCTGCCAGGTGTCATGTCATGTAATTTCTATGAAGAAGACCTACGGTC GTGATACAGCGACATTCCCTTGTGAATGCCATAGCTCACGATATTACGCC TGCTGCAAGAGTCCCTTATTGGTAATTAAAAAAAAATCTGTTTAAGTGTG AACAGTTGAACTTTGCATTAATATTGAAAGAGTCCACCCCCCCTCCCTAT TTCATTTTATTCTTTTGTTTCGTGCTCACTTGTCCACAACGGTAACTATC GATGGTAGTTGGTGGATATTTCCCGGAGCGTTGCTACTCGCCGTCTACGG CTTCGTTCCCGCGGCCCTGCTTCCCGACACATCGTCCGCTGAATTCGGAA GGGCGTTTGCCGTGTATGGAGGCGTGTTCATTGCCATGTCCCTGGCGTGG GCTAGAATTTTCGACGGGTTCGCGCCGGATCCAGGGGACTATGCCGGCGC CGCAGTTGCGCTTGTTGGAGTGGGAATAATGTGGTGGTATCCCCGACAAT AGCAAACGAGGGAAGGGAGGGGGAGACTGTTCAAAGTTCGCTACGTTGGA GCCATCGGCGCCACATGCGAAAATTGCCGGAAATTCGTAAATGCTATCCG CATGGTGAGAAGAGAGGATGTGTAGCGCACACTCGTGATGTAGGCGGGGC CGGCATTATTTCGTGGCGTCATCGATGCAGCTGGAACAAAAAATGTGCAA TCTCAATTTCTG
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Coding sequence (CDS) from alignment at H-paniculata_contig31620:374..1685+

>mRNA_H-paniculata_contig31620.8528.1 ID=mRNA_H-paniculata_contig31620.8528.1|Name=mRNA_H-paniculata_contig31620.8528.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=234bp|location=Sequence derived from alignment at H-paniculata_contig31620:374..1685+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCCCTGGCGTGGGCTAGAATTTTCGACGGGTTCGCGCCGGATCCAGG
GGACTATGCCGGCGCCGCAGTTGCGCTTGTTGGAGTGGGAATAATGTGGT
GGTATCCCCGACAATAGATGTCCCTGGCGTGGGCTAGAATTTTCGACGGG
TTCGCGCCGGATCCAGGGGACTATGCCGGCGCCGCAGTTGCGCTTGTTGG
AGTGGGAATAATGTGGTGGTATCCCCGACAATAG
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