mRNA_H-paniculata_contig31515.8508.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig31515.8508.1
Unique NamemRNA_H-paniculata_contig31515.8508.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig31515.8508.1 vs. uniprot
Match: D7G9G7_ECTSI (Clu domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9G7_ECTSI)

HSP 1 Score: 98.6 bits (244), Expect = 4.900e-22
Identity = 47/67 (70.15%), Postives = 52/67 (77.61%), Query Frame = 1
Query:    7 GRGLCVPPMCLLDYKGFRMLAQAHVPLGPSSLKMGTPDGGRTVLNSLTALTEATQNTAKRMGLCGHI 207
            G GLC+PPMCLLDYKGFRMLAQAH+PLG +SLKMGT DGGRTVLN    L + T   AK +GL  HI
Sbjct:  212 GVGLCIPPMCLLDYKGFRMLAQAHLPLGETSLKMGTNDGGRTVLNDCPILDKRTAMAAKALGLRAHI 278          
BLAST of mRNA_H-paniculata_contig31515.8508.1 vs. uniprot
Match: A0A2P6NR06_9EUKA (Clu domain-containing protein n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NR06_9EUKA)

HSP 1 Score: 81.3 bits (199), Expect = 9.160e-16
Identity = 41/103 (39.81%), Postives = 59/103 (57.28%), Query Frame = 1
Query:    1 RHGRGLCVPPMCLLDYKGFRMLAQAHVPLGPSSLKMGTPDGGRTVLNSLTALTEATQNTAKRMGLCGHIVGGRLALQPYRLFAAADVEGHEGEDSRFDNIDWG 309
            R+  GL  P M L+DYKG+R++A A +P+   +L+ G+ DGG  V      L E  +   KR+GLCGH+ G R   Q   ++   D+EGH G D R   +D+G
Sbjct:  316 RYVEGLHYPMMALVDYKGYRVIALAILPIDKGTLRYGSDDGGMNVHAEDEELNEKMELAGKRLGLCGHVTGTR---QKKVIYGPGDIEGHRGHDGRLYVVDFG 415          
BLAST of mRNA_H-paniculata_contig31515.8508.1 vs. uniprot
Match: A0A6H5KFE7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFE7_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 5.840e-15
Identity = 40/91 (43.96%), Postives = 56/91 (61.54%), Query Frame = 1
Query:   10 RGLCVPPMCLLDYKGFRMLAQAHVPLGPSSLKMGTPDGGRTVLNSLTALTEATQNTAKRMGLCGHIVGGRLALQPYRLFAAADVEGHEGED 282
            RGL     CL+DYKGFRM AQA +P+   SL+ G+ DGG+TV N   +L +  +  AK++ LC H V  +       +++A D+EGH GED
Sbjct:   47 RGLRYALQCLIDYKGFRMTAQAVLPVNKESLRYGSDDGGKTVHNDDESLAKKLKAAAKKLNLCTHRVNDK------DMYSACDIEGHVGED 131          
BLAST of mRNA_H-paniculata_contig31515.8508.1 vs. uniprot
Match: D8LF64_ECTSI (Clu domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF64_ECTSI)

HSP 1 Score: 70.1 bits (170), Expect = 2.140e-12
Identity = 37/90 (41.11%), Postives = 52/90 (57.78%), Query Frame = 1
Query:   10 RGLCVPPMCLLDYKGFRMLAQAHVPLGPSSLKMGTPDGGRTVLNSLTALTEATQNTAKRMGLCGHIVGGRLALQPYRLFAAADVEGHEGE 279
            RGL     CL+DYKGFRM AQA +P+   +L+ G+ D GRTV N    L +  +  AK++ L  H V  +       +++A D+EGH GE
Sbjct:  126 RGLRYALQCLIDYKGFRMTAQAVLPVSSETLRYGSSDAGRTVHNDSENLAKKLKAVAKKLNLRTHWVNDK------EMYSACDIEGHVGE 209          
BLAST of mRNA_H-paniculata_contig31515.8508.1 vs. uniprot
Match: A0A2P6NM88_9EUKA (Clu domain-containing protein n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NM88_9EUKA)

HSP 1 Score: 71.2 bits (173), Expect = 3.000e-12
Identity = 38/103 (36.89%), Postives = 56/103 (54.37%), Query Frame = 1
Query:    1 RHGRGLCVPPMCLLDYKGFRMLAQAHVPLGPSSLKMGTPDGGRTVLNSLTALTEATQNTAKRMGLCGHIVGGRLALQPYRLFAAADVEGHEGEDSRFDNIDWG 309
            R+  GL  P M L+DYKG+R+LA A +P+  S+L+ G+ D GR V      L E  +   +R+ L GH+ G         ++   D+EGH G D R   +D+G
Sbjct:  370 RYVPGLRYPLMTLVDYKGYRVLAMAILPIDRSTLRYGSDDAGRHVHMEDEELNEKMKLAGERLNLAGHVTGSSSDATKI-IYGPGDIEGHRGHDGRLYVVDFG 471          
BLAST of mRNA_H-paniculata_contig31515.8508.1 vs. uniprot
Match: D7G5G9_ECTSI (Clu domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5G9_ECTSI)

HSP 1 Score: 70.5 bits (171), Expect = 5.560e-12
Identity = 39/95 (41.05%), Postives = 57/95 (60.00%), Query Frame = 1
Query:   10 RGLCVPPMCLLDYKGFRMLAQAHVPLGPSSLKMGTPDGGRTVLNSLTALTEATQNTAKRMGLCGHIVGGRLALQPYRLFAAADVEGHEGE-DSRF 291
            RGL     CL+DYKGFRM AQA +P+   SL+ G+ +GG+TV N   +L +  +  AK++ L  H V  +       +++A D+EGH GE DS +
Sbjct:  362 RGLRYALQCLIDYKGFRMTAQAVLPVNKESLRYGSSNGGKTVHNEDESLAKKLKAAAKKLNLRTHRVNDK------DMYSACDIEGHVGEGDSHY 450          
BLAST of mRNA_H-paniculata_contig31515.8508.1 vs. uniprot
Match: L8H9K5_ACACA (Leucine rich repeat domain containing protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8H9K5_ACACA)

HSP 1 Score: 68.2 bits (165), Expect = 3.760e-11
Identity = 36/101 (35.64%), Postives = 54/101 (53.47%), Query Frame = 1
Query:    4 HGRGLCVPPMCLLDYKGFRMLAQAHVPLGPSSLKMGTPDGGRTVLNSLTALTEATQNTAKRMGLCGHIVGGRLALQPYRLFAAADVEGHEGEDSRFDNIDW 306
            H  G+CVP M ++DY+GFR++AQA +P+G  +L  G+ D G  V      + +A       + L  H V  +    P  ++   D+EGH G D RF  ID+
Sbjct:  716 HHFGICVPLMTIIDYRGFRLVAQALLPIGDDTLVYGSSDAGVNVRTDSREIEKALAAACYELNLAKHAVYPKHG-PPVAMYGPGDMEGHFGLDGRFYLIDF 815          
BLAST of mRNA_H-paniculata_contig31515.8508.1 vs. uniprot
Match: A0A7S4PFY5_9EUKA (Hypothetical protein n=1 Tax=Paramoeba aestuarina TaxID=180227 RepID=A0A7S4PFY5_9EUKA)

HSP 1 Score: 67.8 bits (164), Expect = 4.880e-11
Identity = 33/97 (34.02%), Postives = 62/97 (63.92%), Query Frame = 1
Query:   16 LCVPPMCLLDYKGFRMLAQAHVPLGPSSLKMGTPDGGRTVLNSLTALTEATQNTAKRMGLCGHIVGGRLALQPYRLFAAADVEGHEGEDSRFDNIDW 306
            +C+P M LLD+ GFR++A + +P+  ++L+ GT D G+T+    + L E  ++  +++ L  H+V     ++   ++AAAD+EGH+G+D R   +D+
Sbjct:  148 ICLPLMSLLDFNGFRLIAISLIPVNKTTLRYGTADAGKTIYVE-SPLRELMKDAGEKLNLQPHVVRCLDGIER-EVYAAADIEGHQGKDGRVYLLDF 242          
BLAST of mRNA_H-paniculata_contig31515.8508.1 vs. uniprot
Match: A0A7S1VBR0_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Sexangularia sp. CB-2014 TaxID=1486929 RepID=A0A7S1VBR0_9EUKA)

HSP 1 Score: 67.4 bits (163), Expect = 6.850e-11
Identity = 37/96 (38.54%), Postives = 54/96 (56.25%), Query Frame = 1
Query:   16 LCVPPMCLLDYKGFRMLAQAHVPLGPSSLKMGTPDGGRTVLNSLTALTEATQNTAKRMGLCGHIVGGRLALQPYRLFAAADVEGHEGEDSRFDNID 303
            + +P M ++DY+G+R+LA A +P+  S+   G+PDGG TV++S      +    A ++GL  H V G        L A  DVEGH G D R+  ID
Sbjct:  258 IAIPLMAIVDYRGYRLLAVAVLPIDASTCVYGSPDGGATVVSSDPDFAASMACVADQLGLARHSVYG------VELCAPGDVEGHLGRDGRYYAID 347          
BLAST of mRNA_H-paniculata_contig31515.8508.1 vs. uniprot
Match: F4Q305_CAVFA (Clu domain-containing protein n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4Q305_CAVFA)

HSP 1 Score: 67.4 bits (163), Expect = 6.920e-11
Identity = 34/99 (34.34%), Postives = 54/99 (54.55%), Query Frame = 1
Query:   10 RGLCVPPMCLLDYKGFRMLAQAHVPLGPSSLKMGTPDGGRTVLNSLTALTEATQNTAKRMGLCGHIVGGRLALQPYRLFAAADVEGHEGEDSRFDNIDW 306
            +GL VP M  +DY+GFR++A + +P+   +L  G+ D G+TV  S T       + AK + L  H+V      +   ++   D+EGH G D RF  +D+
Sbjct:  510 KGLHVPLMAYIDYRGFRLMAMSLLPITKKTLVYGSSDAGQTVHTSNTMFNHLFTSAAKVLNLKPHVVEDSTGGELRTIYGPIDIEGHVGTDGRFYLLDY 608          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig31515.8508.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G9G7_ECTSI4.900e-2270.15Clu domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A2P6NR06_9EUKA9.160e-1639.81Clu domain-containing protein n=1 Tax=Planoprotost... [more]
A0A6H5KFE7_9PHAE5.840e-1543.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LF64_ECTSI2.140e-1241.11Clu domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A2P6NM88_9EUKA3.000e-1236.89Clu domain-containing protein n=1 Tax=Planoprotost... [more]
D7G5G9_ECTSI5.560e-1241.05Clu domain-containing protein n=1 Tax=Ectocarpus s... [more]
L8H9K5_ACACA3.760e-1135.64Leucine rich repeat domain containing protein n=1 ... [more]
A0A7S4PFY5_9EUKA4.880e-1134.02Hypothetical protein n=1 Tax=Paramoeba aestuarina ... [more]
A0A7S1VBR0_9EUKA6.850e-1138.54Hypothetical protein (Fragment) n=1 Tax=Sexangular... [more]
F4Q305_CAVFA6.920e-1134.34Clu domain-containing protein n=1 Tax=Cavenderia f... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig31515contigH-paniculata_contig31515:1474..2216 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score84.7
Seed ortholog evalue2.4e-14
Seed eggNOG ortholog2880.D7G9G7
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Clustered mitochondria
EggNOG OGs2DZMV@1,2S753@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size309
Cds size279
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig31515.8508.1prot_H-paniculata_contig31515.8508.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig31515 1474..2186 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929971.3548055-CDS-H-paniculata_contig31515:1473..15451622929971.3548055-CDS-H-paniculata_contig31515:1473..1545Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31515 1474..1545 -
1691481092.3444495-CDS-H-paniculata_contig31515:1473..15451691481092.3444495-CDS-H-paniculata_contig31515:1473..1545Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31515 1474..1545 -
1622929971.3656328-CDS-H-paniculata_contig31515:1599..17641622929971.3656328-CDS-H-paniculata_contig31515:1599..1764Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31515 1600..1764 -
1691481092.3553793-CDS-H-paniculata_contig31515:1599..17641691481092.3553793-CDS-H-paniculata_contig31515:1599..1764Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31515 1600..1764 -
1622929971.394234-CDS-H-paniculata_contig31515:2144..21861622929971.394234-CDS-H-paniculata_contig31515:2144..2186Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31515 2145..2186 -
1691481092.3662443-CDS-H-paniculata_contig31515:2144..21861691481092.3662443-CDS-H-paniculata_contig31515:2144..2186Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31515 2145..2186 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929971.4166996-UTR-H-paniculata_contig31515:2186..22161622929971.4166996-UTR-H-paniculata_contig31515:2186..2216Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig31515 2187..2216 -
1691481092.3749058-UTR-H-paniculata_contig31515:2186..22161691481092.3749058-UTR-H-paniculata_contig31515:2186..2216Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig31515 2187..2216 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig31515.8508.1

>prot_H-paniculata_contig31515.8508.1 ID=prot_H-paniculata_contig31515.8508.1|Name=mRNA_H-paniculata_contig31515.8508.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=93bp
MCLLDYKGFRMLAQAHVPLGPSSLKMGTPDGGRTVLNSLTALTEATQNTA
KRMGLCGHIVGGRLALQPYRLFAAADVEGHEGEDSRFDNIDWG
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mRNA from alignment at H-paniculata_contig31515:1474..2216-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig31515.8508.1 ID=mRNA_H-paniculata_contig31515.8508.1|Name=mRNA_H-paniculata_contig31515.8508.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=743bp|location=Sequence derived from alignment at H-paniculata_contig31515:1474..2216- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGGCACGGGCGAGGCTTATGCGTGCCTCCCATGTGCCTCCTCGACTACAA GGGGTTCAGAATGCTGGCGCAGGTGTGTGTGTCTGTTTATGTTTTCATCC AAAACAATCTTGTTCCAATCGCTCAGACCTGCGGTCAGAGGAAAATAAGA ACGGACCGCGGGTCTGCGTGATCGGGCGAAAGTGTTGAAGGATTATAGTA GCAATAGTATATGAAGATGCGTGTTTTTCATGCTGATGTCGCAAGGGGTG GCTGCTCCTTAAGTTCTTTGTGACTGGCGGTGTATCACAGCGGTAAAAGT TGCGTGAACTCAAGCAGCAAGGAGGACCCGCTGCTGTTTTTTTCTGTGGA AAAATATGCTAATCTGTCGTGCAAGATCTTGCAAATGTGTGTATGTTCGT CATGATTCATGGATAACAAAATTATGACGAAATGTAATATTACACGTTGC AGGCGCACGTGCCATTGGGCCCGTCGAGCCTTAAAATGGGCACCCCAGAC GGCGGACGAACGGTCCTCAATTCGTTAACGGCGCTCACGGAAGCCACCCA AAACACCGCCAAAAGAATGGGCCTGTGCGGACACATCGTGGGGGGAAGGC TTGCCCTGCAGCCCTACGTGGACCCCGCAACCGGCGTCACGCGCAAGAGA CGGGTCAATATCGGGGGGCAGCGCCTGTTTGCGGCGGCAGATGTGGAGGG ACACGAAGGAGAAGATTCTAGGTTTGATAACATAGATTGGGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig31515:1474..2216-

>mRNA_H-paniculata_contig31515.8508.1 ID=mRNA_H-paniculata_contig31515.8508.1|Name=mRNA_H-paniculata_contig31515.8508.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=558bp|location=Sequence derived from alignment at H-paniculata_contig31515:1474..2216- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTGCCTCCTCGACTACAAGGGGTTCAGAATGCTGGCGCAGATGTGCCT
CCTCGACTACAAGGGGTTCAGAATGCTGGCGCAGGCGCACGTGCCATTGG
GCCCGTCGAGCCTTAAAATGGGCACCCCAGACGGCGGACGAACGGTCCTC
AATTCGTTAACGGCGCTCACGGAAGCCACCCAAAACACCGCCAAAAGAAT
GGGCCTGTGCGGACACATCGTGGGGGGAAGGCTTGCCCTGCAGCCCTACG
CGCACGTGCCATTGGGCCCGTCGAGCCTTAAAATGGGCACCCCAGACGGC
GGACGAACGGTCCTCAATTCGTTAACGGCGCTCACGGAAGCCACCCAAAA
CACCGCCAAAAGAATGGGCCTGTGCGGACACATCGTGGGGGGAAGGCTTG
CCCTGCAGCCCTACCGCCTGTTTGCGGCGGCAGATGTGGAGGGACACGAA
GGAGAAGATTCTAGGTTTGATAACATAGATTGGGGGCGCCTGTTTGCGGC
GGCAGATGTGGAGGGACACGAAGGAGAAGATTCTAGGTTTGATAACATAG
ATTGGGGG
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