mRNA_H-paniculata_contig1132.850.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1132.850.1
Unique NamemRNA_H-paniculata_contig1132.850.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig1132.850.1 vs. uniprot
Match: D8LJE0_ECTSI (Putative Del transcription factor (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJE0_ECTSI)

HSP 1 Score: 243 bits (619), Expect = 5.030e-69
Identity = 148/243 (60.91%), Postives = 167/243 (68.72%), Query Frame = 1
Query:  247 FANYRRKDKSLGLLCGRFVEVYARVQHIQSKEENPDQAAATATPRKSRSXXXXXXXXXXXXXXPSPLAVSQESDVGESEXXXXXXXXXXXGGGQGMVELDRAAIELGVARRRIYDVINILESLCVVTRARKNTYRWHGKDNMVATLRQLQRTGALVFPEEVVRNGMTECLKQSSLKPYSDSNSGGVGQQAVGLLGGPRIDGQKEKSLGGLCRRFVQLFLVGNDVVSVGEAAVKLSEPEDVSNN 975
            +++Y RKDKSLGLLCGRFVEVY   QH + +        A   P     XXXXXXXXX         A  ++ D G+ E              +GM+ELD+AA ELGVARRRIYDVINILES+CVVTRARKNTYRWHGK N++ TLRQLQRT   VFPEEV +NGMTECLKQ+ L          +G  AVG LGGPR DG KEKSLGGLCRRFVQLFLVGNDVVSVGEAA KLSEP DV+ +
Sbjct:  394 YSSYCRKDKSLGLLCGRFVEVYGHSQHFRDR-------VAGGGPVXXXXXXXXXXXXX--------XAGGKKGDKGDGE--------------EGMIELDKAAAELGVARRRIYDVINILESVCVVTRARKNTYRWHGKKNLILTLRQLQRTATHVFPEEVAKNGMTECLKQAKL----------IGN-AVGSLGGPRADGTKEKSLGGLCRRFVQLFLVGNDVVSVGEAAEKLSEPSDVAGS 596          
BLAST of mRNA_H-paniculata_contig1132.850.1 vs. uniprot
Match: A0A6H5L5C3_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5C3_9PHAE)

HSP 1 Score: 238 bits (606), Expect = 4.280e-67
Identity = 141/243 (58.02%), Postives = 160/243 (65.84%), Query Frame = 1
Query:  247 FANYRRKDKSLGLLCGRFVEVYARVQHIQSKEENPDQAAATATPRKSRSXXXXXXXXXXXXXXPSPLAVSQESDVGESEXXXXXXXXXXXGGGQGMVELDRAAIELGVARRRIYDVINILESLCVVTRARKNTYRWHGKDNMVATLRQLQRTGALVFPEEVVRNGMTECLKQSSLKPYSDSNSGGVGQQAVGLLGGPRIDGQKEKSLGGLCRRFVQLFLVGNDVVSVGEAAVKLSEPEDVSNN 975
            +++Y RKDKSLGLLCGRFVEVY   QH +      D+ A          XXXXX                   D G+ E              +GM+ELD+AA ELGVARRRIYDVINILES+CVVTRARKNTYRWHGK N++ TLRQLQRT   VFPEEV +NGMTECLKQ+ L          +G  A+G LGGPR DG KEKSLGGLCRRFVQLFLVGNDVVSVGEAA KLS+P DV+ +
Sbjct:  410 YSSYCRKDKSLGLLCGRFVEVYGHSQHFR------DRVAGGXXXXXXXXXXXXX------------XXXXXXGDKGDDE--------------EGMIELDKAAAELGVARRRIYDVINILESVCVVTRARKNTYRWHGKKNLILTLRQLQRTATHVFPEEVAKNGMTECLKQAKL----------IGN-AIGSLGGPRADGTKEKSLGGLCRRFVQLFLVGNDVVSVGEAAEKLSDPSDVAGS 609          
BLAST of mRNA_H-paniculata_contig1132.850.1 vs. uniprot
Match: A0A7S3Q8J9_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q8J9_9STRA)

HSP 1 Score: 108 bits (271), Expect = 8.770e-23
Identity = 86/270 (31.85%), Postives = 117/270 (43.33%), Query Frame = 1
Query:  256 YRRKDKSLGLLCGRFVEVYARVQHIQSKEENPDQAAATATPRKSRSXXXXXXXXXXXXXXPSPLAVSQESDVGESEXXXXXXXXXXXGGGQGMVELDRAAIELGVARRRIYDVINILESLCVVTRARKNTYRWHGKDNMVATLRQLQRTGALVFPEEVVRNGMTECLKQSS----LKPYSDSNSGGVGQQAV---GLLGGPRIDGQ--------------------------------KEKSLGGLCRRFVQLFLVGNDVVSVGEAAVKL 948
            YRRKDKSLG+LC  F+  Y ++QH     E P  A                         P P  V+                            +D A+  L V RRRIYD+INILE++ VVTR  KNTY W G DN+  TLR++Q     +FP++VV NG+ E   + +     K  + + +GGVG   V   G       DG                                 KEKSLG L ++F+QLFLVGN+ +++ EA+ K+
Sbjct:   75 YRRKDKSLGVLCANFMRRYNKIQH-----EKPTDA-------------------------PHPPEVT----------------------------IDEASQSLMVERRRIYDIINILEAIEVVTRKGKNTYNWFGMDNINDTLRKMQTEAFTLFPQDVVFNGLHEVKLEEAEAAVAKVAAQAGNGGVGTVPVKEDGTKAEDEADGDSSSLPTGFAMLLASAEQVEAKKKKPKAKKGTSKEKSLGRLSQKFIQLFLVGNETITLEEASDKI 286          
BLAST of mRNA_H-paniculata_contig1132.850.1 vs. uniprot
Match: A0A7S1B9K5_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1B9K5_9STRA)

HSP 1 Score: 101 bits (252), Expect = 3.520e-21
Identity = 56/138 (40.58%), Postives = 87/138 (63.04%), Query Frame = 1
Query:  535 VELDRAAIELGVARRRIYDVINILESLCVVTRARKNTYRWHGKDNMVATLRQLQRTGALVFPEEVVRNGMTECLKQSSLKPYSDSNSGGVGQQAVGLLGGPRIDGQKEKSLGGLCRRFVQLFLVGNDVVSVGEAAVKL 948
            + +D AA  LGV RRRIYD+INILES+ +V R  KNTY W+GK+++   L +LQ+    ++PE+   NG+   L + S+   SD+ +              + +  K+KSLG L ++F+Q+FLVGN+V+S+ EA+ K+
Sbjct:   51 ISIDAAANALGVERRRIYDIINILESIEIVRRKCKNTYIWYGKEHLGYVLARLQQQAFTMWPEDAKTNGL---LSEGSIILNSDNKT--------------KTESNKDKSLGRLSQKFIQMFLVGNNVLSLAEASEKI 171          
BLAST of mRNA_H-paniculata_contig1132.850.1 vs. uniprot
Match: A0A7S2QRQ0_9EUKA (Hypothetical protein n=1 Tax=Norrisiella sphaerica TaxID=552664 RepID=A0A7S2QRQ0_9EUKA)

HSP 1 Score: 88.2 bits (217), Expect = 9.490e-16
Identity = 79/254 (31.10%), Postives = 113/254 (44.49%), Query Frame = 1
Query:  226 RDEYSCKFANYRRKDKSLGLLCGRFVEVYARVQHIQSKEENPDQAAATATPRKSRSXXXXXXXXXXXXXXPSPLAVSQESDVGESEXXXXXXXXXXXGGGQGMVELDRAAIELGVARRRIYDVINILESLCVVTRARKNTYRWHGKDNMVATLRQLQRTGALVFPEEVVRNGMTECLKQSSLKPYSDSNSGGVGQQAVGLLGGPRIDGQKEKSLGGLCRRFVQLFLVGND-VVSVGEAAVKLSE-----PEDVS 969
            + +   K  NY RKDKSLGLLCGRF+++Y       +KE                                           G++                  + LD AA  LGV RRRIYD++NILES+ +V+R  KN Y WHG   + A L +++        +E  R+ M +C+   S    S+ N+G   +   G +   + D ++EKSLG L RRFVQ+F      VVS+ +A   L +     P+DVS
Sbjct:   31 KTQAKTKARNYSRKDKSLGLLCGRFLKLY------NNKE-------------------------------------------GKN------------------ICLDEAADTLGVERRRIYDIVNILESIEIVSRLGKNKYTWHGVKGLAAALSKIK--------DETDRS-MGKCVPDDSA---SNLNAGSSSRYKNGSI---KKDSRREKSLGLLSRRFVQMFFTSESRVVSLDQAGNALVDGKPATPKDVS 202          
BLAST of mRNA_H-paniculata_contig1132.850.1 vs. uniprot
Match: A0A7S4NF84_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4NF84_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 1.250e-15
Identity = 88/267 (32.96%), Postives = 120/267 (44.94%), Query Frame = 1
Query:  256 YRRKDKSLGLLCGRFVEVYARVQHIQSKEENPDQAAATATPRKSRSXXXXXXXXXXXXXXPSPLAVSQESDVGESEXXXXXXXXXXXGGGQGMVELDRAAIELGVARRRIYDVINILESLCVVTRARKNTYRWHGKDNMVATLRQLQRTGALVFPEEVVRNGMTECLKQSSLKPYSDSNSGG----VGQQAVGLLGGPRIDGQK--------------------------------EKSLGGLCRRFVQLFLVGNDVVSVGEAAVKL 948
            Y RKDKSLGLLC +FVE Y             D AA  A    + +  XXXXXXXXX    S  AV QE+                   G+ +V +  AA  LGV RRRIYD+INILE++ VV+R  KNTY WHG + +  T  ++QR   L  P    +N    C+   +    +D           +  +  L   R++G K                                +KSLG L R+F+QLFLVG   +++ +A+ K+
Sbjct:  779 YNRKDKSLGLLCEKFVETYT------------DLAARGAAAAVANANAXXXXXXXXXGG--SDAAVLQEAGCTHEPD------------GRLLVSISSAARHLGVERRRIYDIINILEAIGVVSRKCKNTYWWHGLEGLEVTFGRMQRECVLGGPPGAKQNFSKVCVDTPAAAAAADLRDPKWREWAAENGIDKLVLKRLEGDKKGDNRSKFDADRRGDYNSSNDGSGVVAGTAVPQKSLGLLSRKFIQLFLVGYVNIALTDASEKI 1019          
BLAST of mRNA_H-paniculata_contig1132.850.1 vs. uniprot
Match: A0A8C5DZC5_9TELE (E2F transcription factor 7 n=1 Tax=Gouania willdenowi TaxID=441366 RepID=A0A8C5DZC5_9TELE)

HSP 1 Score: 87.8 bits (216), Expect = 1.950e-15
Identity = 59/149 (39.60%), Postives = 83/149 (55.70%), Query Frame = 1
Query:  535 VELDRAAIELGVARRRIYDVINILESLCVVTRARKNTYRWHGKDNMVATLRQLQRTGALVFPEEVVRNGMTECLKQSSLKPYSDSNSGGVGQQAVGLLGGPRIDGQKEKSLGGLCRRFVQLFLVGNDVVSVGEAAVKL--SEPEDVSNN 975
            + LD  A  LGV RRRIYD++N+LESL +V R  KN+Y WHG+  + A L++LQR G     EE     M   L Q S++P +  +    G+   G  GG R    K+KSL  + ++FV LFLV        +AA K+   E +D S++
Sbjct:  179 ISLDEVATSLGVERRRIYDIVNVLESLMIVGRMAKNSYIWHGRQRLEARLQELQRRGR----EEGYHRLME--LAQFSIRPTALVHEDDSGEGDTGNGGGNR----KDKSLRIMSQKFVMLFLVSKTQTVTLDAAAKILIEESQDSSSH 317          
BLAST of mRNA_H-paniculata_contig1132.850.1 vs. uniprot
Match: A0A7S0CIQ8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CIQ8_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 1.980e-15
Identity = 46/122 (37.70%), Postives = 70/122 (57.38%), Query Frame = 1
Query:  535 VELDRAAIELGVARRRIYDVINILESLCVVTRARKNTYRWHGKDNMVATLRQLQRTGALVFPEEVVRNGMTECLKQSSLKPYSDSNSGGVGQQAVGLLGGPRIDGQKEKSLGGLCRRFVQLF 900
            + +D AA  LGV RRRIYD+INILES+ VV R  KNTY W G D++     +LQ+    ++P++  +NG+ +  ++S   P  + +S                +G+K+K L  L +RF+QLF
Sbjct:   35 ISIDAAAASLGVERRRIYDIINILESIHVVRRKCKNTYTWRGTDHLPQVFAKLQKEAMKIWPDDARQNGIVDEDEKSVPSPGRNEDS-------------CNEEGEKKKILWRLSQRFIQLF 143          
BLAST of mRNA_H-paniculata_contig1132.850.1 vs. uniprot
Match: A0A873AG86_9SALA (E2F transcription factor 7 n=1 Tax=Ambystoma andersoni TaxID=282260 RepID=A0A873AG86_9SALA)

HSP 1 Score: 87.4 bits (215), Expect = 2.110e-15
Identity = 58/153 (37.91%), Postives = 87/153 (56.86%), Query Frame = 1
Query:  535 VELDRAAIELGVARRRIYDVINILESLCVVTRARKNTYRWHGKDNMVATLRQLQRTGALVFPEEVV-----RNGMTECLKQSSLKPYSDSNSGGVGQQAVGLLGGPRIDGQKEKSLGGLCRRFVQLFLVGN-DVVSVGEAA-VKLSEPEDVSN 972
            + LD  A  LGV RRRIYD++N+LESL +V+R  KN Y WHG + +  TL++LQ  GAL   EE +     ++G  E       K + D  SG +   A         + +K+KSL  + ++FV LFLV   ++V++  AA + + E +DVS+
Sbjct:  137 ISLDEVAASLGVERRRIYDIVNVLESLHLVSRVAKNQYCWHGLNGLNQTLQRLQCLGALQKYEEQIAHFQHKDGDMEYRSGDRKKTFRDYQSGHLFDFAEADGHSAAANSRKDKSLRIMSQKFVMLFLVSTTNIVTLDIAAKILIDESQDVSD 289          
BLAST of mRNA_H-paniculata_contig1132.850.1 vs. uniprot
Match: A0A873A8H8_AMBME (E2F transcription factor 7 n=1 Tax=Ambystoma mexicanum TaxID=8296 RepID=A0A873A8H8_AMBME)

HSP 1 Score: 87.4 bits (215), Expect = 2.790e-15
Identity = 58/153 (37.91%), Postives = 87/153 (56.86%), Query Frame = 1
Query:  535 VELDRAAIELGVARRRIYDVINILESLCVVTRARKNTYRWHGKDNMVATLRQLQRTGALVFPEEVV-----RNGMTECLKQSSLKPYSDSNSGGVGQQAVGLLGGPRIDGQKEKSLGGLCRRFVQLFLVGN-DVVSVGEAA-VKLSEPEDVSN 972
            + LD  A  LGV RRRIYD++N+LESL +V+R  KN Y WHG + +  TL++LQ  GAL   EE +     ++G  E       K + D  SG +   A         + +K+KSL  + ++FV LFLV   ++V++  AA + + E +DVS+
Sbjct:  168 ISLDEVAASLGVERRRIYDIVNVLESLHLVSRVAKNQYCWHGLNGLNQTLQRLQCLGALQKYEEQIAHFQHKDGDMEYRSGDRKKTFRDYQSGHLFDFAEADGHSAAANSRKDKSLRIMSQKFVMLFLVSTTNIVTLDIAAKILIEESQDVSD 320          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1132.850.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LJE0_ECTSI5.030e-6960.91Putative Del transcription factor (Partial) (Fragm... [more]
A0A6H5L5C3_9PHAE4.280e-6758.02Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A7S3Q8J9_9STRA8.770e-2331.85Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A7S1B9K5_9STRA3.520e-2140.58Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A7S2QRQ0_9EUKA9.490e-1631.10Hypothetical protein n=1 Tax=Norrisiella sphaerica... [more]
A0A7S4NF84_9STRA1.250e-1532.96Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A8C5DZC5_9TELE1.950e-1539.60E2F transcription factor 7 n=1 Tax=Gouania willden... [more]
A0A7S0CIQ8_9STRA1.980e-1537.70Hypothetical protein (Fragment) n=1 Tax=Proboscia ... [more]
A0A873AG86_9SALA2.110e-1537.91E2F transcription factor 7 n=1 Tax=Ambystoma ander... [more]
A0A873A8H8_AMBME2.790e-1537.91E2F transcription factor 7 n=1 Tax=Ambystoma mexic... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1132contigH-paniculata_contig1132:25943..28828 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score241.9
Seed ortholog evalue4.2e-61
Seed eggNOG ortholog2880.D8LJE0
KEGG koko:K09391
Hectar predicted targeting categoryother localisation
EggNOG free text desc.chorionic trophoblast cell differentiation
EggNOG OGsKOG2577@1,KOG2578@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03000
Exons5
Model size982
Cds size981
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1132.850.1prot_H-paniculata_contig1132.850.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1132 25943..28828 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928840.4218926-CDS-H-paniculata_contig1132:25942..262151622928840.4218926-CDS-H-paniculata_contig1132:25942..26215Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1132 25943..26215 +
1691480640.3716455-CDS-H-paniculata_contig1132:25942..262151691480640.3716455-CDS-H-paniculata_contig1132:25942..26215Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1132 25943..26215 +
1622928840.4397845-CDS-H-paniculata_contig1132:26615..269921622928840.4397845-CDS-H-paniculata_contig1132:26615..26992Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1132 26616..26992 +
1691480640.3864193-CDS-H-paniculata_contig1132:26615..269921691480640.3864193-CDS-H-paniculata_contig1132:26615..26992Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1132 26616..26992 +
1622928840.454633-CDS-H-paniculata_contig1132:27461..275501622928840.454633-CDS-H-paniculata_contig1132:27461..27550Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1132 27462..27550 +
1691480640.3973053-CDS-H-paniculata_contig1132:27461..275501691480640.3973053-CDS-H-paniculata_contig1132:27461..27550Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1132 27462..27550 +
1622928840.4676726-CDS-H-paniculata_contig1132:28038..281541622928840.4676726-CDS-H-paniculata_contig1132:28038..28154Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1132 28039..28154 +
1691480640.4121428-CDS-H-paniculata_contig1132:28038..281541691480640.4121428-CDS-H-paniculata_contig1132:28038..28154Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1132 28039..28154 +
1622928840.482372-CDS-H-paniculata_contig1132:28702..288281622928840.482372-CDS-H-paniculata_contig1132:28702..28828Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1132 28703..28828 +
1691480640.4204206-CDS-H-paniculata_contig1132:28702..288281691480640.4204206-CDS-H-paniculata_contig1132:28702..28828Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1132 28703..28828 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1132.850.1

>prot_H-paniculata_contig1132.850.1 ID=prot_H-paniculata_contig1132.850.1|Name=mRNA_H-paniculata_contig1132.850.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=327bp
LDGAGQGVTPPAKLARGKVKGYDKDKDVNLRGCEQGAGTVGIATPRSMNL
AAGEAAAAGGLVSSSPEGAWGGDGSRDEYSCKFANYRRKDKSLGLLCGRF
VEVYARVQHIQSKEENPDQAAATATPRKSRSSPLSSRSSRSSRSSPSPLA
VSQESDVGESEGEGEGEGEGEKGGGQGMVELDRAAIELGVARRRIYDVIN
ILESLCVVTRARKNTYRWHGKDNMVATLRQLQRTGALVFPEEVVRNGMTE
CLKQSSLKPYSDSNSGGVGQQAVGLLGGPRIDGQKEKSLGGLCRRFVQLF
LVGNDVVSVGEAAVKLSEPEDVSNNL*
back to top

mRNA from alignment at H-paniculata_contig1132:25943..28828+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1132.850.1 ID=mRNA_H-paniculata_contig1132.850.1|Name=mRNA_H-paniculata_contig1132.850.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2886bp|location=Sequence derived from alignment at H-paniculata_contig1132:25943..28828+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTGGACGGTGCCGGGCAAGGGGTTACTCCTCCTGCCAAGTTGGCGCGAGG GAAGGTGAAGGGATATGATAAGGATAAAGATGTCAACTTACGGGGCTGTG AGCAGGGGGCTGGTACTGTTGGTATTGCTACACCTCGGTCCATGAACTTG GCTGCCGGTGAGGCTGCTGCTGCGGGTGGGTTGGTCTCGTCGTCTCCTGA GGGTGCTTGGGGAGGAGATGGATCTCGCGACGAGTACTCGTGCAAATTCG CTAACTACCGCAGGAAGGATAAGGTGTGTAGAGCTACGTAGCAAAGTGTG TGGAAATTGAAGCTGCAGTTAAAACGTTCGCCAGATTGGTGTGCAAAGGT CATTCGGCTGCCGTGACAGCAGGTGATGCAGGAGGTGGGTGAAGGCGCTC GTCAAGCCACGTCATGTTTTTTCGGGGTTCAAAATTTTCTTCGAACAAAG ATAGATGTGTGCAATCGATTAAACAACGATTGGATTGATTGCTAGATTGA TGAATGAATGGATGAACGGACGATAATAAACCAAGGTGCATGCATGCATC CTGCCAACTGCTACTTTGAACAGGCATGATGGTAGCTGATTTACATTTTC CCCAAACCTTCCATGTATGTCCGTACAACCAACCGTCTTTACTGATTGTT TACGACTGCACGTGAGAAAACAGTCGCTGGGACTGCTGTGCGGCCGCTTT GTGGAGGTCTACGCTCGAGTGCAGCACATCCAGTCTAAGGAAGAGAACCC TGACCAAGCGGCAGCAACAGCGACACCTAGAAAGTCGCGGTCGTCACCAT TATCATCACGATCATCACGATCATCACGATCATCGCCATCACCCTTGGCC GTGAGCCAAGAATCAGACGTTGGCGAGAGCGAAGGTGAAGGTGAAGGTGA AGGTGAAGGTGAAAAAGGTGGAGGTCAAGGGATGGTTGAACTGGACCGGG CCGCGATTGAGCTTGGCGTGGCCCGGCGCCGCATATACGACGTGATCAAC ATATTGGAGAGCTTGTGTGTCGTTACTCGCGCCAGGAAAAACACCTACAG GTGAACAGTGAACAGTGTTGTAGTTAGTAGTTAGGGTTTCGAGGGACTTA CTTTGAACTCCTGCAGACTCTATCTTGAAAGTGTGTTGATTGGTAGGGTT AGGGTTGTTTGGCCATTCTTCGTTTTTTAACGGAAAGCAATCCTTGAGAT TATGGCCTGAGATTATGGACGTTTCAAGGATTTCTTGTCTCGACGCAGTC AGCTTTGACCTTGAATATTTCTTGTCTCTAAAGGGTGTGGTTGGTTGGGT TTTACATGATATCACATGATGATATGGTCGCCTAGTTCTACGGGGAGCAG AGTAGCACAATGGTACAGTTGACCTTCCGCTTTGTCAAGGTACATGCCTC GATTGTGTCGACTGTCTTGATTACACCGATTTGCTTTGTTTGGCTGATGC ACCTTGGATGCATGGTGTTTTATCCATTTGTGTTAACTCTAATCACTTCC ATTGCGTTGACGGTAACAGATGGCACGGCAAAGACAACATGGTCGCTACG CTACGTCAACTTCAGCGGACTGGAGCTCTCGTGTTCCCGGAAGAGGTGGT TAGGAACGGTGAGGTCAAATTACTGTATTGTGAGAAATACTGTAGTCTAA GTAAAAGCAATTCTACTCATCCAAGTATAATACTGTTTTTGTAGAAAAGG GGAACTACTGATGTATTTATCGAAGGAGCAACGATCGAACAAGCTACAAT AGCTTCATCTGTGCAATGGACAGAGTCCCTATCATGTGTACAACAAATCG TTTGGGTGGCGCTGATGGTCATTGGACTTGTCATGGTCCAGACAGGACTT AGTTGTTAGTATTAATAGGTGTATCACTATCAAGTTCTTCACCCAGTGTG TTATCTTTGCTTCCTTCGCCCATGCCGGAGTCATTGGGTGGAGCTGGTTC GTGAGTATTTTTTACCTTGGTAGGTTGGAATAGTCTCTAAAGAAGTAGTG TAGTGTAGTATTGTGTTGCAACTTTTTAAGTAGTACCAATCATGAATACA TGGCTCGATTTGTCTGCTGCTGTTTCTCTTTGGCCTCTTTCTGTAGGCAT GACAGAGTGCCTCAAGCAAAGCTCGCTGAAGCCATACTCGGACAGCAACT CAGGAGGAGTGGGACAGCAAGCGGTCGGCTTGCTCGGTGGGCCAAGGATA GATGGACAAAAGGTACATAAAAAAGCAATCATGTAGACACTCACCTGTCG ACCTTGTCAGCAGTTTCCTGTACTGTACTGTACTGTACTGTGCTGTAATT CTTAACACACTCGGTGCACCTCTAGATAACATAGGCAGCGAATGTTTGTA TTTGGCGTATTTCGTTGTGCAAGTACGTGGCCAAGCGGTACAAGCTTAAC TTGAACGGAATCAATCAATCCAATCCTTTTTGGGATGACCCAGGAAATTG ACTGAATACCCTTGACAATCTTAGATCATCCTCGCGTGATACCAGCCACT TGTTCGTCGATGCAGTGGCAGCAGTAGTAGCAGACTCGGCTACCTGGCTG TAAATTTGGGGTCTCGAGAAGCGTCAACATGTTAGCACCTTCTTCTGATC GCCTGTTGATGCGTTCGTCTTCGCCCTGCTGGCATGTCGACATGTTAACG ACGTCTTGTGTTAGCCTATGACTCGTCAGCCTGTATCCTGCTAGCGTGTT GTCGGGCTAGCGGGTTAACGTGATAGCGTGTGCTGGATACGGCGTGATCC TTTCATTCAGGAGAAAAGTCTTGGCGGGCTGTGCCGTCGCTTCGTGCAGC TCTTCTTGGTGGGCAACGACGTCGTCAGCGTTGGGGAAGCTGCTGTGAAG CTCTCAGAGCCAGAGGACGTGAGTAACAATCTCTGA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig1132:25943..28828+

>mRNA_H-paniculata_contig1132.850.1 ID=mRNA_H-paniculata_contig1132.850.1|Name=mRNA_H-paniculata_contig1132.850.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1962bp|location=Sequence derived from alignment at H-paniculata_contig1132:25943..28828+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTGGACGGTGCCGGGCAAGGGGTTACTCCTCCTGCCAAGTTGGCGCGAGG
GAAGGTGAAGGGATATGATAAGGATAAAGATGTCAACTTACGGGGCTGTG
AGCAGGGGGCTGGTACTGTTGGTATTGCTACACCTCGGTCCATGAACTTG
GCTGCCGGTGAGGCTGCTGCTGCGGGTGGGTTGGTCTCGTCGTCTCCTGA
GGGTGCTTGGGGAGGAGATGGATCTCGCGACGAGTACTCGTGCAAATTCG
CTAACTACCGCAGGAAGGATAAGTTGGACGGTGCCGGGCAAGGGGTTACT
CCTCCTGCCAAGTTGGCGCGAGGGAAGGTGAAGGGATATGATAAGGATAA
AGATGTCAACTTACGGGGCTGTGAGCAGGGGGCTGGTACTGTTGGTATTG
CTACACCTCGGTCCATGAACTTGGCTGCCGGTGAGGCTGCTGCTGCGGGT
GGGTTGGTCTCGTCGTCTCCTGAGGGTGCTTGGGGAGGAGATGGATCTCG
CGACGAGTACTCGTGCAAATTCGCTAACTACCGCAGGAAGGATAAGTCGC
TGGGACTGCTGTGCGGCCGCTTTGTGGAGGTCTACGCTCGAGTGCAGCAC
ATCCAGTCTAAGGAAGAGAACCCTGACCAAGCGGCAGCAACAGCGACACC
TAGAAAGTCGCGGTCGTCACCATTATCATCACGATCATCACGATCATCAC
GATCATCGCCATCACCCTTGGCCGTGAGCCAAGAATCAGACGTTGGCGAG
AGCGAAGGTGAAGGTGAAGGTGAAGGTGAAGGTGAAAAAGGTGGAGGTCA
AGGGATGGTTGAACTGGACCGGGCCGCGATTGAGCTTGGCGTGGCCCGGC
GCCGCATATACGACGTGATCAACATATTGGAGAGCTTGTGTGTCGTTACT
CGCGCCAGGAAAAACACCTACAGTCGCTGGGACTGCTGTGCGGCCGCTTT
GTGGAGGTCTACGCTCGAGTGCAGCACATCCAGTCTAAGGAAGAGAACCC
TGACCAAGCGGCAGCAACAGCGACACCTAGAAAGTCGCGGTCGTCACCAT
TATCATCACGATCATCACGATCATCACGATCATCGCCATCACCCTTGGCC
GTGAGCCAAGAATCAGACGTTGGCGAGAGCGAAGGTGAAGGTGAAGGTGA
AGGTGAAGGTGAAAAAGGTGGAGGTCAAGGGATGGTTGAACTGGACCGGG
CCGCGATTGAGCTTGGCGTGGCCCGGCGCCGCATATACGACGTGATCAAC
ATATTGGAGAGCTTGTGTGTCGTTACTCGCGCCAGGAAAAACACCTACAG
ATGGCACGGCAAAGACAACATGGTCGCTACGCTACGTCAACTTCAGCGGA
CTGGAGCTCTCGTGTTCCCGGAAGAGGTGGTTAGGAACGATGGCACGGCA
AAGACAACATGGTCGCTACGCTACGTCAACTTCAGCGGACTGGAGCTCTC
GTGTTCCCGGAAGAGGTGGTTAGGAACGGCATGACAGAGTGCCTCAAGCA
AAGCTCGCTGAAGCCATACTCGGACAGCAACTCAGGAGGAGTGGGACAGC
AAGCGGTCGGCTTGCTCGGTGGGCCAAGGATAGATGGACAAAAGGCATGA
CAGAGTGCCTCAAGCAAAGCTCGCTGAAGCCATACTCGGACAGCAACTCA
GGAGGAGTGGGACAGCAAGCGGTCGGCTTGCTCGGTGGGCCAAGGATAGA
TGGACAAAAGGAGAAAAGTCTTGGCGGGCTGTGCCGTCGCTTCGTGCAGC
TCTTCTTGGTGGGCAACGACGTCGTCAGCGTTGGGGAAGCTGCTGTGAAG
CTCTCAGAGCCAGAGGACGTGAGTAACAATCTCTGAGAGAAAAGTCTTGG
CGGGCTGTGCCGTCGCTTCGTGCAGCTCTTCTTGGTGGGCAACGACGTCG
TCAGCGTTGGGGAAGCTGCTGTGAAGCTCTCAGAGCCAGAGGACGTGAGT
AACAATCTCTGA
back to top