prot_H-paniculata_contig314.8483.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig314.8483.1
Unique Nameprot_H-paniculata_contig314.8483.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length205
Homology
BLAST of mRNA_H-paniculata_contig314.8483.1 vs. uniprot
Match: D7FXG5_ECTSI (Arginine/serine-rich splicing factor 6 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FXG5_ECTSI)

HSP 1 Score: 248 bits (632), Expect = 3.460e-80
Identity = 118/132 (89.39%), Postives = 125/132 (94.70%), Query Frame = 0
Query:    1 MGFAFIEFDDQRDAEDAVAEMDGREFDGARIVVQRGRGHRPNGPKFASRRTEHRVVVEGLDSRTSWQDLKDFGRQAGQVLYSDVFIRHGRRWGVVEYLSRDDMKAAVRTLDDTRLGGKYIRVKEENPSRDSR 132
            MGFAFIEF+D+RDAEDAVAEMDGREFDGARIVVQ GRGHRPNGPKFA+RRTEHR+ VEGLDS TSWQDLKDFGRQAGQVLYSDVF R GRRWGVVEY+SRDDMKAA+RTLDDTRLGGKYIRV+EEN  RDSR
Sbjct:   36 MGFAFIEFEDRRDAEDAVAEMDGREFDGARIVVQPGRGHRPNGPKFATRRTEHRITVEGLDSHTSWQDLKDFGRQAGQVLYSDVFFRQGRRWGVVEYVSRDDMKAAIRTLDDTRLGGKYIRVREENSGRDSR 167          
BLAST of mRNA_H-paniculata_contig314.8483.1 vs. uniprot
Match: A0A1Y1ITP1_KLENI (RNA-binding protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1ITP1_KLENI)

HSP 1 Score: 125 bits (313), Expect = 1.230e-31
Identity = 68/138 (49.28%), Postives = 91/138 (65.94%), Query Frame = 0
Query:    3 FAFIEFDDQRDAEDAVAEMDGREFDGARIVVQRGRG--HRPNGPKFASR------RTEHRVVVEGLDSRTSWQDLKDFGRQAGQVLYSDVFIRHGRRWGVVEYLSRDDMKAAVRTLDDTRLGGK--YIRVKEENPSRD 130
            FAF+E+DD RDA+DA+ ++DG  F G R+ V+  R     P GP+   +      R + RVV+EGL  RTSWQDLKDFGR+AG V Y+DVF   G+  GV+EY SR+D++ AVR LD  RL G   Y+R + E+ SR+
Sbjct:   57 FAFVEYDDYRDADDAIRKLDGYTFMGGRLQVEASRPPPRMPVGPRPGQQPGGLFNRQDKRVVIEGLSERTSWQDLKDFGREAGAVAYADVFRDRGKIQGVIEYQSREDVRNAVRKLDGVRLQGNTVYLRPEVESGSRE 194          
BLAST of mRNA_H-paniculata_contig314.8483.1 vs. uniprot
Match: A0A7N9ASU1_9TELE (Serine/arginine-rich splicing factor 6-like n=2 Tax=Percomorphaceae TaxID=1489872 RepID=A0A7N9ASU1_9TELE)

HSP 1 Score: 122 bits (307), Expect = 6.440e-31
Identity = 64/147 (43.54%), Postives = 88/147 (59.86%), Query Frame = 0
Query:    2 GFAFIEFDDQRDAEDAVAEMDGREFDGARIVVQRGRGHRPNGPKFASR-------------------RTEHRVVVEGLDSRTSWQDLKDFGRQAGQVLYSDVFIRHGRRWGVVEYLSRDDMKAAVRTLDDTRLGGKYIRVKEENPSR 129
            G+ F+EF+D RDA+DAV E++G+E  G R++++  RG R +G  +  R                   RTEHR++VE L SR SWQDLKDF RQAG+V Y+D         GV+E+ SR DMK A+  LD T + G+ IR+ E+ P R
Sbjct:   36 GYGFVEFEDMRDADDAVYELNGKELCGERVIIEHARGPRRDGYGYGGRSGGYSSWNRSGRDKYGPPVRTEHRLIVENLSSRCSWQDLKDFMRQAGEVTYADAHKGRANE-GVIEFRSRSDMKRALEKLDGTDINGRKIRLVEDKPRR 181          
BLAST of mRNA_H-paniculata_contig314.8483.1 vs. uniprot
Match: A0A6P8RXC7_GEOSA (serine/arginine-rich splicing factor 5-like isoform X1 n=4 Tax=Gymnophiona TaxID=8445 RepID=A0A6P8RXC7_GEOSA)

HSP 1 Score: 122 bits (307), Expect = 6.910e-31
Identity = 69/153 (45.10%), Postives = 92/153 (60.13%), Query Frame = 0
Query:    2 GFAFIEFDDQRDAEDAVAEMDGREFDGARIVVQ-----RGRGHRPNGPKFASR-----------------RTEHRVVVEGLDSRTSWQDLKDFGRQAGQVLYSDVFIRHGRRWGVVEYLSRDDMKAAVRTLDDTRLGGKYIRVKEENPSRDSR 132
            GF F+EF+D RDA+DAV E++G+E    R+ ++     RGRG    G +F +R                 RT+HR++VE L SR SWQDLKDF R+AG+V Y D   R  +  GVVE+ S DDMK A+ TLD T L G+ I++ E+N  R SR
Sbjct:   38 GFGFVEFEDHRDADDAVYELNGKELCNERVTIEHARNRRGRGRFGGGGRFPTRFSYQYRSSGSSRYGPPLRTKHRIIVENLSSRVSWQDLKDFMRKAGEVTYVDAH-RSNKNEGVVEFASFDDMKNALDTLDGTELNGRKIKLIEDNKKRRSR 189          
BLAST of mRNA_H-paniculata_contig314.8483.1 vs. uniprot
Match: A0A8K0GIU1_9COLE (Uncharacterized protein n=1 Tax=Ignelater luminosus TaxID=2038154 RepID=A0A8K0GIU1_9COLE)

HSP 1 Score: 123 bits (308), Expect = 1.330e-30
Identity = 67/144 (46.53%), Postives = 91/144 (63.19%), Query Frame = 0
Query:    2 GFAFIEFDDQRDAEDAVAEMDGREFDGARIVVQRGRGHRPNGPKFASR-------------RTEHRVVVEGLDSRTSWQDLKDFGRQAGQVLYSDVFIRHGRRWGVVEYLSRDDMKAAVRTLDDTRLGGKYIRVKEENPSRDSR 132
            G+ F+EFDD RDA+DAV E++G++  G R+ V+R RG      +++SR             RT +RV+VE L SR SWQDLKD+ RQAG+V Y+D   +H R  GVVE+ S  DMK A+  LDDT L G+ IR+ E+  +R  R
Sbjct:   38 GYGFVEFDDYRDADDAVYELNGKKLLGERVTVERARGTPRGRDQWSSRSDHRSHERYGPPTRTNYRVIVENLSSRISWQDLKDYMRQAGEVTYADAHKQH-RNEGVVEFASYSDMKNAIDKLDDTELNGRRIRLIEDKNTRRKR 180          
BLAST of mRNA_H-paniculata_contig314.8483.1 vs. uniprot
Match: A0A3Q4H868_NEOBR (Serine/arginine-rich splicing factor 6-like n=28 Tax=Ovalentaria TaxID=1489908 RepID=A0A3Q4H868_NEOBR)

HSP 1 Score: 123 bits (308), Expect = 1.610e-30
Identity = 65/147 (44.22%), Postives = 88/147 (59.86%), Query Frame = 0
Query:    2 GFAFIEFDDQRDAEDAVAEMDGREFDGARIVVQRGRGHRPNGPKFASR-------------------RTEHRVVVEGLDSRTSWQDLKDFGRQAGQVLYSDVFIRHGRRWGVVEYLSRDDMKAAVRTLDDTRLGGKYIRVKEENPSR 129
            G+ F+EF+D RDA+DAV E++G+E  G R+V++  RG R +G  +  R                   RTEHR++VE L SR SWQDLKDF RQAG+V Y+D         GV+E+ SR DMK A+  LD T + G+ IR+ E+ P R
Sbjct:   36 GYGFVEFEDMRDADDAVYELNGKELCGERVVIEHARGPRRDGYGYGGRSGGYSSWNRTGRDKYGPPVRTEHRLIVENLSSRCSWQDLKDFMRQAGEVTYADAHKGRANE-GVIEFRSRSDMKRALEKLDGTDINGRKIRLVEDKPRR 181          
BLAST of mRNA_H-paniculata_contig314.8483.1 vs. uniprot
Match: UPI00159C61E2 (serine/arginine-rich splicing factor 6 isoform X1 n=4 Tax=Carangaria TaxID=1489904 RepID=UPI00159C61E2)

HSP 1 Score: 124 bits (310), Expect = 1.630e-30
Identity = 65/150 (43.33%), Postives = 88/150 (58.67%), Query Frame = 0
Query:    2 GFAFIEFDDQRDAEDAVAEMDGREFDGARIVVQRGRGHRPNGPKFASR----------------------RTEHRVVVEGLDSRTSWQDLKDFGRQAGQVLYSDVFIRHGRRWGVVEYLSRDDMKAAVRTLDDTRLGGKYIRVKEENPSR 129
            G+ F+EF+D RDA+DAV E++G+E  G R+V++  RG R +G  F  R                      RTEHR++VE L SR SWQDLKDF RQAG+V Y+D         G++EY SR +MK A+  LD T + G+ IR+ E+ P R
Sbjct:   36 GYGFVEFEDMRDADDAVYELNGKELCGERVVIEHARGPRRDGSGFGGRSKFSGGHSSWNRTGRDKYGPPVRTEHRLIVENLSSRCSWQDLKDFMRQAGEVTYADAHKGRANE-GIIEYRSRSEMKRAIEKLDGTDVNGRKIRLVEDKPRR 184          
BLAST of mRNA_H-paniculata_contig314.8483.1 vs. uniprot
Match: A0A090XDU6_IXORI (Putative alternative splicing factor (Fragment) n=1 Tax=Ixodes ricinus TaxID=34613 RepID=A0A090XDU6_IXORI)

HSP 1 Score: 123 bits (309), Expect = 1.730e-30
Identity = 71/145 (48.97%), Postives = 87/145 (60.00%), Query Frame = 0
Query:    2 GFAFIEFDDQRDAEDAVAEMDGREFDGARIVVQRGRGHRPNGPKFAS------------RRTEHRVVVEGLDSRTSWQDLKDFGRQAGQVLYSDVFIRHGRRWGVVEYLSRDDMKAAVRTLDDTRLGGKYIRVKEENPSR--DSR 132
            GF F+EFDD RDA+DAV E++GRE DG R+VV+   G     P   S             RT++RV++E L SR SWQDLKD  RQ G V Y+D   R  R  GVVE+ S  DM+ A+  LD+T L G+ IRV EE P R  DSR
Sbjct:   38 GFGFVEFDDDRDADDAVYELNGRELDGERVVVELAHGTARRAPAARSYMDTPVNRYGPPTRTDYRVIIENLSSRISWQDLKDRMRQVGDVTYADAH-RRKRNEGVVEFASYSDMRRAIDKLDNTELNGRRIRVIEEKPIRRPDSR 181          
BLAST of mRNA_H-paniculata_contig314.8483.1 vs. uniprot
Match: A0A1Y1L1P2_PHOPY (Uncharacterized protein n=1 Tax=Photinus pyralis TaxID=7054 RepID=A0A1Y1L1P2_PHOPY)

HSP 1 Score: 121 bits (304), Expect = 2.110e-30
Identity = 65/141 (46.10%), Postives = 87/141 (61.70%), Query Frame = 0
Query:    2 GFAFIEFDDQRDAEDAVAEMDGREFDGARIVVQRGRG-------------HRPNGPKFASRRTEHRVVVEGLDSRTSWQDLKDFGRQAGQVLYSDVFIRHGRRWGVVEYLSRDDMKAAVRTLDDTRLGGKYIRVKEENPSR 129
            G+ F+EFDD RDA+DAV E++G++  G R+ V+R RG             HR +       RT +RV++E L SR SWQDLKD+ RQAG+V Y+D    H R  GVVE+ S  DMK A+  LDDT L G+ I+V ++  SR
Sbjct:   38 GYGFVEFDDYRDADDAVYELNGKKLLGERVTVERARGTPRGRDQWSMRSDHRSHERYGPPARTNYRVIIENLSSRVSWQDLKDYMRQAGEVTYADAHKEH-RNQGVVEFASYSDMKNAIEKLDDTDLNGRKIKVVQDKRSR 177          
BLAST of mRNA_H-paniculata_contig314.8483.1 vs. uniprot
Match: A0A388LTQ4_CHABU (Uncharacterized protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388LTQ4_CHABU)

HSP 1 Score: 121 bits (304), Expect = 2.480e-30
Identity = 58/125 (46.40%), Postives = 83/125 (66.40%), Query Frame = 0
Query:    3 FAFIEFDDQRDAEDAVAEMDGREFDGARIVVQRGRGHRPNGPKFASR--RTEHRVVVEGLDSRTSWQDLKDFGRQAGQVLYSDVFIRHGRRWGVVEYLSRDDMKAAVRTLDDTRLGGKYIRVKEE 125
            F F+EF++ R AEDA+ ++DG  F G+R++V+  R +R           R E+RV+++ L   T+WQDLKDFGR+AG V Y+DV++ HGR  GV+EY +RD  + AVR L   RL G Y+ V+EE
Sbjct:   24 FGFVEFENPRHAEDAIKKLDGYYFGGSRLLVEASRSNRGVSTNVGGMYGRRENRVIIDSLGPHTTWQDLKDFGREAGSVAYADVYMEHGRLRGVIEYSTRDGARTAVRKLHGVRLQGAYVSVREE 148          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig314.8483.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FXG5_ECTSI3.460e-8089.39Arginine/serine-rich splicing factor 6 n=2 Tax=Ect... [more]
A0A1Y1ITP1_KLENI1.230e-3149.28RNA-binding protein n=1 Tax=Klebsormidium nitens T... [more]
A0A7N9ASU1_9TELE6.440e-3143.54Serine/arginine-rich splicing factor 6-like n=2 Ta... [more]
A0A6P8RXC7_GEOSA6.910e-3145.10serine/arginine-rich splicing factor 5-like isofor... [more]
A0A8K0GIU1_9COLE1.330e-3046.53Uncharacterized protein n=1 Tax=Ignelater luminosu... [more]
A0A3Q4H868_NEOBR1.610e-3044.22Serine/arginine-rich splicing factor 6-like n=28 T... [more]
UPI00159C61E21.630e-3043.33serine/arginine-rich splicing factor 6 isoform X1 ... [more]
A0A090XDU6_IXORI1.730e-3048.97Putative alternative splicing factor (Fragment) n=... [more]
A0A1Y1L1P2_PHOPY2.110e-3046.10Uncharacterized protein n=1 Tax=Photinus pyralis T... [more]
A0A388LTQ4_CHABU2.480e-3046.40Uncharacterized protein n=1 Tax=Chara braunii TaxI... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 54..123
e-value: 3.0E-10
score: 50.0
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 55..121
e-value: 6.0E-10
score: 38.8
coord: 2..31
e-value: 8.3E-8
score: 32.0
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 53..127
score: 10.855
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 1..38
score: 10.275
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 53..126
e-value: 2.4E-18
score: 67.8
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 1..52
e-value: 3.0E-10
score: 42.4
NoneNo IPR availablePANTHERPTHR23003:SF30SERINE/ARGININE-RICH-SPLICING FACTOR 5A-RELATEDcoord: 2..200
NoneNo IPR availablePANTHERPTHR23003RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEINcoord: 2..200
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 2..126

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig314contigH-paniculata_contig314:5877..11713 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig314.8483.1mRNA_H-paniculata_contig314.8483.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig314 4504..15405 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig314.8483.1 ID=prot_H-paniculata_contig314.8483.1|Name=mRNA_H-paniculata_contig314.8483.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=205bp
MGFAFIEFDDQRDAEDAVAEMDGREFDGARIVVQRGRGHRPNGPKFASRR
TEHRVVVEGLDSRTSWQDLKDFGRQAGQVLYSDVFIRHGRRWGVVEYLSR
DDMKAAVRTLDDTRLGGKYIRVKEENPSRDSRSRSRSHSRRSRSDSRSPP
ARRRRSRDRRSPSPDARDDKDRGRDRGRRRERDYSRSRSRSPARHSRSRS
RHSR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR035979RBD_domain_sf