mRNA_H-paniculata_contig31376.8471.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig31376.8471.1
Unique NamemRNA_H-paniculata_contig31376.8471.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig31376.8471.1 vs. uniprot
Match: D7FJ16_ECTSI (Calponin-homology (CH) domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ16_ECTSI)

HSP 1 Score: 170 bits (431), Expect = 3.060e-49
Identity = 82/105 (78.10%), Postives = 94/105 (89.52%), Query Frame = 3
Query:  186 AVGARGAGYGLDAELARKREAGYDHRAEDEVRAWIEAITQEPCEGPFGESLRNGVLLCKLVNCISPGSVKKINESRMPFKQMENISNFLKACRTLGVAEHSLFET 500
            A GARGAGYGLDAELAR+REA YDH AED+ RAWIEA+T E   GPFG++LR+GV++CKLVN I PG+V+KINESRMPFKQMENISNFLK+CR +GVAEHSLFET
Sbjct:    3 AFGARGAGYGLDAELARQREAKYDHSAEDQARAWIEAVTGERVVGPFGDALRDGVVICKLVNTIKPGAVRKINESRMPFKQMENISNFLKSCRAMGVAEHSLFET 107          
BLAST of mRNA_H-paniculata_contig31376.8471.1 vs. uniprot
Match: A0A836CGB8_9STRA (Calponin homology domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGB8_9STRA)

HSP 1 Score: 139 bits (351), Expect = 2.220e-38
Identity = 69/104 (66.35%), Postives = 80/104 (76.92%), Query Frame = 3
Query:  189 VGARGAGYGLDAELARKREAGYDHRAEDEVRAWIEAITQEPCEGPFGESLRNGVLLCKLVNCISPGSVKKINESRMPFKQMENISNFLKACRTLGVAEHSLFET 500
            VGARG GYGLDAELARK  A YD+  E   + WIEA+T+   EG F  +L++G +LCKL+N I PG+VKKIN S MPFKQMENIS +LK CR LGVAEHSLFET
Sbjct:    2 VGARGGGYGLDAELARKAAANYDYAGEHAAQEWIEAVTRVKFEGTFAAALKDGSVLCKLLNAIRPGTVKKINTSSMPFKQMENISAYLKGCRALGVAEHSLFET 105          
BLAST of mRNA_H-paniculata_contig31376.8471.1 vs. uniprot
Match: A0A835ZHQ8_9STRA (Calponin homology domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHQ8_9STRA)

HSP 1 Score: 136 bits (343), Expect = 9.720e-37
Identity = 66/101 (65.35%), Postives = 78/101 (77.23%), Query Frame = 3
Query:  198 RGAGYGLDAELARKREAGYDHRAEDEVRAWIEAITQEPCEGPFGESLRNGVLLCKLVNCISPGSVKKINESRMPFKQMENISNFLKACRTLGVAEHSLFET 500
            RG GYGLDAELA K  A YD   E   + W+EA+T    EG F  SL++G LLC+L+N I PG++K+IN S+MPFKQMENISNFLKACRTLGVAE+SLFET
Sbjct:    4 RGGGYGLDAELALKAAAKYDFEGERTAQEWMEAVTGVKFEGSFASSLKDGTLLCQLINAIKPGTIKRINSSKMPFKQMENISNFLKACRTLGVAEYSLFET 104          
BLAST of mRNA_H-paniculata_contig31376.8471.1 vs. uniprot
Match: A0A7R9YD67_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YD67_9STRA)

HSP 1 Score: 132 bits (332), Expect = 8.800e-34
Identity = 65/104 (62.50%), Postives = 80/104 (76.92%), Query Frame = 3
Query:  189 VGARGAGYGLDAELARKREAGYDHRAEDEVRAWIEAITQEPCEGPFGESLRNGVLLCKLVNCISPGSVKKINESRMPFKQMENISNFLKACRTLGVAEHSLFET 500
            V ARG GYGLDA+LA+ R   YD+  E EV+ WIEA+T E   G FGESL++G +LCKL+N I PGS++ IN S++PFKQMEN+S FL+ CR LGVAEH LFET
Sbjct:  287 VSARGGGYGLDAQLAQIRLDKYDYDLEAEVKEWIEAVTGEAFPGGFGESLKDGRILCKLINAIKPGSIRIINTSKLPFKQMENVSVFLRNCRALGVAEHDLFET 390          
BLAST of mRNA_H-paniculata_contig31376.8471.1 vs. uniprot
Match: A0A6H5L3X7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3X7_9PHAE)

HSP 1 Score: 132 bits (333), Expect = 4.070e-33
Identity = 65/107 (60.75%), Postives = 78/107 (72.90%), Query Frame = 3
Query:  180 RQAVGARGAGYGLDAELARKREAGYDHRAEDEVRAWIEAITQEPCEGPFGESLRNGVLLCKLVNCISPGSVKKINESRMPFKQMENISNFLKACRTLGVAEHSLFET 500
            R   G RG GYGLDAELA +REA YD       + WIE +T E     FGE L++G  LC L+N I PG+V+++N+SRMPFKQMEN+SNFLKACR +GVAEHSLFET
Sbjct:  336 RSPTGGRGGGYGLDAELAARREANYDXXXXXXAQEWIEDVTGERFAEGFGEELKDGRKLCLLINQIKPGAVRRVNDSRMPFKQMENVSNFLKACRAVGVAEHSLFET 442          
BLAST of mRNA_H-paniculata_contig31376.8471.1 vs. uniprot
Match: A0A2D4CAP3_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CAP3_PYTIN)

HSP 1 Score: 124 bits (310), Expect = 8.970e-31
Identity = 63/105 (60.00%), Postives = 77/105 (73.33%), Query Frame = 3
Query:  189 VGARGAGYGLDAELARKREAGYDHRAEDEVRAWIEAITQEPCEGPFGESLRNGVLLCKLVNCISPGSVKKIN-ESRMPFKQMENISNFLKACRTLGVAEHSLFET 500
            V ARG GYGLDAELA++    YD+  EDE R WIEAIT       FGE LR+GV+LC+L N I PG +++I  +S+MPFK MEN+S FLKACRT+GV E+ LFET
Sbjct:    6 VKARGGGYGLDAELAQRAAEKYDYEMEDEARQWIEAITGREIGASFGEGLRDGVILCELANKIHPGVIRRIETKSKMPFKLMENVSAFLKACRTIGVNEYELFET 110          
BLAST of mRNA_H-paniculata_contig31376.8471.1 vs. uniprot
Match: K3WZS5_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WZS5_GLOUD)

HSP 1 Score: 124 bits (311), Expect = 3.800e-30
Identity = 65/108 (60.19%), Postives = 79/108 (73.15%), Query Frame = 3
Query:  180 RQAVGARGAGYGLDAELARKREAGYDHRAEDEVRAWIEAITQEPCEGPFGESLRNGVLLCKLVNCISPGSVKKIN-ESRMPFKQMENISNFLKACRTLGVAEHSLFET 500
            R  V ARG GYGLDAELAR+    YD+  EDE RAWIEA++       FGE LR+GV+LC LVN I P  VK+I  +S+MPFK MEN+S+FL+ACRT+GV+E  LFET
Sbjct:    3 RPPVQARGGGYGLDAELARRAAERYDYEMEDEARAWIEAVSGMAIGDEFGEGLRDGVILCTLVNKIHPDIVKRIETKSKMPFKLMENVSSFLRACRTMGVSEFDLFET 110          
BLAST of mRNA_H-paniculata_contig31376.8471.1 vs. uniprot
Match: A0A8B8A1K2_ACAPL (Calponin n=1 Tax=Acanthaster planci TaxID=133434 RepID=A0A8B8A1K2_ACAPL)

HSP 1 Score: 114 bits (285), Expect = 6.140e-29
Identity = 56/98 (57.14%), Postives = 69/98 (70.41%), Query Frame = 3
Query:  207 GYGLDAELARKREAGYDHRAEDEVRAWIEAITQEPCEGPFGESLRNGVLLCKLVNCISPGSVKKINESRMPFKQMENISNFLKACRTLGVAEHSLFET 500
            GYG+ AELA K  A YD + E E + WIEA+T E  +G F E L++GV+LCKL+N + PGSVKKINES+M FK MENI NFL AC   G  +  LF+T
Sbjct:    7 GYGMTAELADKTAAKYDPQQEREAQDWIEAVTGERVQGSFQEGLKSGVILCKLINVLQPGSVKKINESKMAFKMMENIGNFLDACYAYGCPKADLFQT 104          
BLAST of mRNA_H-paniculata_contig31376.8471.1 vs. uniprot
Match: H3H261_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H261_PHYRM)

HSP 1 Score: 119 bits (298), Expect = 4.360e-28
Identity = 59/102 (57.84%), Postives = 75/102 (73.53%), Query Frame = 3
Query:  198 RGAGYGLDAELARKREAGYDHRAEDEVRAWIEAITQEPCEGPFGESLRNGVLLCKLVNCISPGSVKKIN-ESRMPFKQMENISNFLKACRTLGVAEHSLFET 500
            RG G+GLDAELARK    YD+  E+E RAW+E I++ P    FGE LR+GV+LC + N I+PG VK++  +S+MPFK MEN+S FLKACR +GV E  LFET
Sbjct: 1031 RGGGFGLDAELARKAAERYDYDMENEARAWLETISEMPIGDDFGEGLRDGVVLCSVANKINPGVVKRVETKSKMPFKLMENVSAFLKACRVMGVNEFDLFET 1132          
BLAST of mRNA_H-paniculata_contig31376.8471.1 vs. uniprot
Match: A0A5D6XYZ9_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XYZ9_9STRA)

HSP 1 Score: 117 bits (294), Expect = 7.020e-28
Identity = 61/108 (56.48%), Postives = 74/108 (68.52%), Query Frame = 3
Query:  180 RQAVGARGAGYGLDAELARKREAGYDHRAEDEVRAWIEAITQEPCEGPFGESLRNGVLLCKLVNCISPGSVKKIN-ESRMPFKQMENISNFLKACRTLGVAEHSLFET 500
            R  V  RG GYGLDAELAR+    YD+  EDE R WIEA+  +     FGE LR+GV+LC LVN I PG V ++  +S+MPFK MEN+S FL+ACR +GV E  LFET
Sbjct:    3 RPPVQTRGGGYGLDAELARRAAERYDYEMEDEARDWIEAVAHKDIGEDFGEGLRDGVVLCALVNAIHPGIVPRVETKSKMPFKLMENVSAFLRACRKIGVNEFDLFET 110          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig31376.8471.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJ16_ECTSI3.060e-4978.10Calponin-homology (CH) domain-containing protein n... [more]
A0A836CGB8_9STRA2.220e-3866.35Calponin homology domain-containing protein n=1 Ta... [more]
A0A835ZHQ8_9STRA9.720e-3765.35Calponin homology domain-containing protein n=1 Ta... [more]
A0A7R9YD67_9STRA8.800e-3462.50Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A6H5L3X7_9PHAE4.070e-3360.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A2D4CAP3_PYTIN8.970e-3160.00Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
K3WZS5_GLOUD3.800e-3060.19Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A8B8A1K2_ACAPL6.140e-2957.14Calponin n=1 Tax=Acanthaster planci TaxID=133434 R... [more]
H3H261_PHYRM4.360e-2857.84Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
A0A5D6XYZ9_9STRA7.020e-2856.48Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig31376contigH-paniculata_contig31376:346..1607 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score174.1
Seed ortholog evalue3.7e-41
Seed eggNOG ortholog2880.D7FJ16
Preferred nameSCP1
KEGG koko:K20526
Hectar predicted targeting categoryother localisation
GOsGO:0000278,GO:0000281,GO:0000910,GO:0001300,GO:0003674,GO:0003779,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005856,GO:0005938,GO:0006996,GO:0007010,GO:0007015,GO:0007049,GO:0007568,GO:0007569,GO:0008092,GO:0008150,GO:0009987,GO:0015629,GO:0016043,GO:0022402,GO:0030029,GO:0030036,GO:0030479,GO:0030674,GO:0030863,GO:0030864,GO:0032502,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044448,GO:0044464,GO:0044877,GO:0048869,GO:0051015,GO:0051301,GO:0051764,GO:0060090,GO:0061640,GO:0061645,GO:0071840,GO:0071944,GO:0097435,GO:0099568,GO:1903047
EggNOG free text desc.actin binding
EggNOG OGsCOG5199@1,KOG2046@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Exons3
Model size500
Cds size336
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig31376.8471.1prot_H-paniculata_contig31376.8471.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig31376 346..1443 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929966.515671-CDS-H-paniculata_contig31376:345..3901622929966.515671-CDS-H-paniculata_contig31376:345..390Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31376 346..390 -
1691481090.2272823-CDS-H-paniculata_contig31376:345..3901691481090.2272823-CDS-H-paniculata_contig31376:345..390Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31376 346..390 -
1622929966.5310452-CDS-H-paniculata_contig31376:834..10081622929966.5310452-CDS-H-paniculata_contig31376:834..1008Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31376 835..1008 -
1691481090.242124-CDS-H-paniculata_contig31376:834..10081691481090.242124-CDS-H-paniculata_contig31376:834..1008Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31376 835..1008 -
1622929966.5460842-CDS-H-paniculata_contig31376:1326..14431622929966.5460842-CDS-H-paniculata_contig31376:1326..1443Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31376 1327..1443 -
1691481090.2534616-CDS-H-paniculata_contig31376:1326..14431691481090.2534616-CDS-H-paniculata_contig31376:1326..1443Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31376 1327..1443 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929966.569449-UTR-H-paniculata_contig31376:1443..16071622929966.569449-UTR-H-paniculata_contig31376:1443..1607Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig31376 1444..1607 -
1691481090.267553-UTR-H-paniculata_contig31376:1443..16071691481090.267553-UTR-H-paniculata_contig31376:1443..1607Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig31376 1444..1607 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig31376.8471.1

>prot_H-paniculata_contig31376.8471.1 ID=prot_H-paniculata_contig31376.8471.1|Name=mRNA_H-paniculata_contig31376.8471.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=112bp
MSAFDRQAVGARGAGYGLDAELARKREAGYDHRAEDEVRAWIEAITQEPC
EGPFGESLRNGVLLCKLVNCISPGSVKKINESRMPFKQMENISNFLKACR
TLGVAEHSLFET
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mRNA from alignment at H-paniculata_contig31376:346..1607-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig31376.8471.1 ID=mRNA_H-paniculata_contig31376.8471.1|Name=mRNA_H-paniculata_contig31376.8471.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1262bp|location=Sequence derived from alignment at H-paniculata_contig31376:346..1607- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCACATTCTCACTTCTTACGTTGGATAAGTGTCCTGTGCTACCTAGTATT GTCGATCTGTCTGTTCGTGTGCCCACCAGAGCTTGACGTTACCCTGACTG CGGTGAGCTCCGAGTGCATTTTGTGAGGTCTGTGAGGTCGACCTCAACGT CTGCAGTAAAGCAGATGTCCGCATTCGATCGCCAAGCGGTTGGAGCCCGT GGAGCGGGATATGGCCTAGATGCTGAACTCGCACGGAAACGTGAGGCTGG GTACGATCATAGAGCGGAAGATGAAGTCAGGGTGAGTGTCTTGATGGTCA TTTCTGAGAGAGAGCTGAGCTCTTCATGGGATAGAAACGGTCGTCAGCCG TTGGCGTGGGTTTTCTTACACGTGAACTCACCCTATAACCACAAGAGTTA TCCGAACCGTTAGCTTAGTTCAACCCGCAACACTCTCCGTCCGTGGGGTG ACTCTGCCATTACTAGTAATGTCCTCAGTAGAAGGAGGGCGATTTAGCCT AGTAACTTCTATATATTCTGTCATCCAACATCGCCTTTCATGTCAATGAA GGCTTCGCAAACACACGCTCTAAATATCACACGAAAACACCACACACAGG CGTGGATCGAGGCCATCACCCAAGAGCCATGCGAAGGGCCTTTTGGAGAA TCTTTGCGGAACGGCGTCCTCTTGTGCAAGCTGGTCAACTGCATTTCTCC GGGTAGCGTCAAGAAGATCAATGAATCCAGGATGCCTTTCAAGCAGATGG AAAACATCTCCAACTTTCTGAAGGTAAATTCAAGAAATACACATGAAAGT GGTACAGAACTTAGAACCCGCGTTCCGTGAAGCACATGTTGCAACTGTTC CACTGTCAGTATCGTCAATAGCTAGCGAACTGCTGGTGGCTTTCTATCTG CATCGTACTGACGTGCCACTGACCAGCAATTCCCCATGAACCCAATTTTG GGTATGTTTCGCTTGCCTGCCGGTTTCTAGTGACGAAACGAGGAATTTGT TGAGGTATCGCTTATGGAATCAGTCTTGCTCTGCTATCTTCAAATAATTT TATGTGGAAACATTTACATCCTGGTTTACCTCGTCTAGGGAAGTATTCGG TTTAGTACGGGGGGGAGTGCGTAAGGCAAATTCGTTCCACGACACAGCAC TTGGGTTTCTTTATCGTTTTCGTTGAGAGCTTACCGTACTCATGCTTTGC TACTATTCCTTGGACAGGCATGCAGGACTTTGGGGGTTGCCGAACACAGC TTATTCGAGACA
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Coding sequence (CDS) from alignment at H-paniculata_contig31376:346..1607-

>mRNA_H-paniculata_contig31376.8471.1 ID=mRNA_H-paniculata_contig31376.8471.1|Name=mRNA_H-paniculata_contig31376.8471.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=672bp|location=Sequence derived from alignment at H-paniculata_contig31376:346..1607- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCCGCATTCGATCGCCAAGCGGTTGGAGCCCGTGGAGCGGGATATGG
CCTAGATGCTGAACTCGCACGGAAACGTGAGGCTGGGTACGATCATAGAG
CGGAAGATGAAGTCAGGATGTCCGCATTCGATCGCCAAGCGGTTGGAGCC
CGTGGAGCGGGATATGGCCTAGATGCTGAACTCGCACGGAAACGTGAGGC
TGGGTACGATCATAGAGCGGAAGATGAAGTCAGGGCGTGGATCGAGGCCA
TCACCCAAGAGCCATGCGAAGGGCCTTTTGGAGAATCTTTGCGGAACGGC
GTCCTCTTGTGCAAGCTGGTCAACTGCATTTCTCCGGGTAGCGTCAAGAA
GATCAATGAATCCAGGATGCCTTTCAAGCAGATGGAAAACATCTCCAACT
TTCTGAAGGCGTGGATCGAGGCCATCACCCAAGAGCCATGCGAAGGGCCT
TTTGGAGAATCTTTGCGGAACGGCGTCCTCTTGTGCAAGCTGGTCAACTG
CATTTCTCCGGGTAGCGTCAAGAAGATCAATGAATCCAGGATGCCTTTCA
AGCAGATGGAAAACATCTCCAACTTTCTGAAGGCATGCAGGACTTTGGGG
GTTGCCGAACACAGCTTATTCGAGACAGCATGCAGGACTTTGGGGGTTGC
CGAACACAGCTTATTCGAGACA
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