prot_H-paniculata_contig31361.8467.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig31361.8467.1
Unique Nameprot_H-paniculata_contig31361.8467.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length111
Homology
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BLAST of mRNA_H-paniculata_contig31361.8467.1 vs. uniprot
Match: D8LC52_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LC52_ECTSI)

HSP 1 Score: 83.2 bits (204), Expect = 2.560e-16
Identity = 44/52 (84.62%), Postives = 47/52 (90.38%), Query Frame = 0 
Query:    8 RRAAIGSGVALAAHVVFSERARRQAGSMLRGSVLAALAGTGTVCAGLAYFNP 59
            RRAA+GSG+ALAAHV FSERARRQAGSMLRGS+LAALAGT TVCA LAY  P
Sbjct:  490 RRAALGSGIALAAHVAFSERARRQAGSMLRGSLLAALAGTATVCASLAYLKP 541
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig31361.8467.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LC52_ECTSI2.560e-1684.62Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..25
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 58..111
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 35..57
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 10..20
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 21..25
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 26..34
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..9
NoneNo IPR availableTMHMMTMhelixcoord: 35..57

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig31361contigH-paniculata_contig31361:499..831 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig31361.8467.1mRNA_H-paniculata_contig31361.8467.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig31361 499..831 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig31361.8467.1 ID=prot_H-paniculata_contig31361.8467.1|Name=mRNA_H-paniculata_contig31361.8467.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=111bp
MVPFVLCRRAAIGSGVALAAHVVFSERARRQAGSMLRGSVLAALAGTGTV
CAGLAYFNPTTQAANADADADSDADSAGPPRTQPNAPRTAVAAADPPPLR
RRWYGDDSAVR
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