mRNA_H-paniculata_contig31361.8467.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig31361.8467.1
Unique NamemRNA_H-paniculata_contig31361.8467.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig31361.8467.1 vs. uniprot
Match: D8LC52_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LC52_ECTSI)

HSP 1 Score: 83.2 bits (204), Expect = 2.560e-16
Identity = 44/52 (84.62%), Postives = 47/52 (90.38%), Query Frame = 1 
Query:   22 RRAAIGSGVALAAHVVFSERARRQAGSMLRGSVLAALAGTGTVCAGLAYFNP 177
            RRAA+GSG+ALAAHV FSERARRQAGSMLRGS+LAALAGT TVCA LAY  P
Sbjct:  490 RRAALGSGIALAAHVAFSERARRQAGSMLRGSLLAALAGTATVCASLAYLKP 541
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig31361.8467.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LC52_ECTSI2.560e-1684.62Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig31361contigH-paniculata_contig31361:499..831 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size333
Cds size333
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929965.9642372-CDS-H-paniculata_contig31361:498..8311622929965.9642372-CDS-H-paniculata_contig31361:498..831Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31361 499..831 +
1691481089.977995-CDS-H-paniculata_contig31361:498..8311691481089.977995-CDS-H-paniculata_contig31361:498..831Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31361 499..831 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig31361.8467.1prot_H-paniculata_contig31361.8467.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig31361 499..831 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig31361.8467.1

>prot_H-paniculata_contig31361.8467.1 ID=prot_H-paniculata_contig31361.8467.1|Name=mRNA_H-paniculata_contig31361.8467.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=111bp
MVPFVLCRRAAIGSGVALAAHVVFSERARRQAGSMLRGSVLAALAGTGTV
CAGLAYFNPTTQAANADADADSDADSAGPPRTQPNAPRTAVAAADPPPLR
RRWYGDDSAVR
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mRNA from alignment at H-paniculata_contig31361:499..831+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig31361.8467.1 ID=mRNA_H-paniculata_contig31361.8467.1|Name=mRNA_H-paniculata_contig31361.8467.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=333bp|location=Sequence derived from alignment at H-paniculata_contig31361:499..831+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTGCCTTTTGTTTTGTGCAGACGTGCTGCCATCGGATCCGGGGTGGC
GCTCGCTGCCCACGTCGTGTTCTCCGAGCGGGCGAGACGACAGGCCGGCT
CGATGCTGCGAGGCAGCGTGCTGGCCGCCCTCGCCGGTACGGGCACTGTC
TGCGCCGGGCTCGCTTACTTCAACCCTACAACCCAAGCGGCCAACGCCGA
CGCCGACGCCGATAGTGACGCCGACTCCGCCGGGCCTCCTCGAACACAAC
CGAACGCGCCACGTACTGCTGTTGCTGCTGCTGATCCACCACCTTTGCGG
AGGCGGTGGTATGGCGATGACTCGGCGGTACGA
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Coding sequence (CDS) from alignment at H-paniculata_contig31361:499..831+

>mRNA_H-paniculata_contig31361.8467.1 ID=mRNA_H-paniculata_contig31361.8467.1|Name=mRNA_H-paniculata_contig31361.8467.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=666bp|location=Sequence derived from alignment at H-paniculata_contig31361:499..831+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTGCCTTTTGTTTTGTGCAGACGTGCTGCCATCGGATCCGGGGTGGC
GCTCGCTGCCCACGTCGTGTTCTCCGAGCGGGCGAGACGACAGGCCGGCT
CGATGCTGCGAGGCAGCGTGCTGGCCGCCCTCGCCGGTACGGGCACTGTC
TGCGCCGGGCTCGCTTACTTCAACCCTACAACCCAAGCGGCCAACGCCGA
CGCCGACGCCGATAGTGACGCCGACTCCGCCGGGCCTCCTCGAACACAAC
CGAACGCGCCACGTACTGCTGTTGCTGCTGCTGATCCACCACCTTTGCGG
AGGCGGTGGTATGGCGATGACTCGGCGGTACGAATGGTGCCTTTTGTTTT
GTGCAGACGTGCTGCCATCGGATCCGGGGTGGCGCTCGCTGCCCACGTCG
TGTTCTCCGAGCGGGCGAGACGACAGGCCGGCTCGATGCTGCGAGGCAGC
GTGCTGGCCGCCCTCGCCGGTACGGGCACTGTCTGCGCCGGGCTCGCTTA
CTTCAACCCTACAACCCAAGCGGCCAACGCCGACGCCGACGCCGATAGTG
ACGCCGACTCCGCCGGGCCTCCTCGAACACAACCGAACGCGCCACGTACT
GCTGTTGCTGCTGCTGATCCACCACCTTTGCGGAGGCGGTGGTATGGCGA
TGACTCGGCGGTACGA
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