mRNA_H-paniculata_contig31321.8460.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
|
Overview
Homology
BLAST of mRNA_H-paniculata_contig31321.8460.1 vs. uniprot
Match: D7FY73_ECTSI (Topoisomerase 6 subunit B n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY73_ECTSI) HSP 1 Score: 194 bits (492), Expect = 1.180e-55 Identity = 91/110 (82.73%), Postives = 100/110 (90.91%), Query Frame = 1
Query: 1 QYHKSGKHCIEYRRSGEKRWVSMQRTAFYIVERVQPSAERGEVKEMEPDPTEGLAPVEKWNYQEDITPAFCTALSQLHRAYGCKIQETGHKTVGHTCVTDRDKVAARLVK 330
QYHKSGKHC+EYRRSGEKRWV+M +TAFYIVER QP+ GEVKEMEPDPTEGLAP+EKW+Y EDI+P FC ALS LHRAYGC++QETGHKTVGHTCVTDRDKVAAR VK
Sbjct: 196 QYHKSGKHCVEYRRSGEKRWVNMLKTAFYIVERAQPTG--GEVKEMEPDPTEGLAPIEKWHYHEDISPEFCMALSLLHRAYGCRVQETGHKTVGHTCVTDRDKVAAREVK 303
BLAST of mRNA_H-paniculata_contig31321.8460.1 vs. uniprot
Match: A0A6H5KB73_9PHAE (DOT1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB73_9PHAE) HSP 1 Score: 189 bits (479), Expect = 7.090e-54 Identity = 88/110 (80.00%), Postives = 100/110 (90.91%), Query Frame = 1
Query: 1 QYHKSGKHCIEYRRSGEKRWVSMQRTAFYIVERVQPSAERGEVKEMEPDPTEGLAPVEKWNYQEDITPAFCTALSQLHRAYGCKIQETGHKTVGHTCVTDRDKVAARLVK 330
QYHKSGKHC+EYRRSGEKRWV+M ++AFYIVER QP+ GEVKEME DPTEGLAP+EKW+Y+EDI+P FC ALS LHRAYGC++QETGH+TVGHTCVTDRDKVAAR VK
Sbjct: 193 QYHKSGKHCVEYRRSGEKRWVNMLKSAFYIVERAQPTG--GEVKEMESDPTEGLAPIEKWHYEEDISPEFCMALSLLHRAYGCRVQETGHRTVGHTCVTDRDKVAAREVK 300
BLAST of mRNA_H-paniculata_contig31321.8460.1 vs. uniprot
Match: A0A7S3HRH5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HRH5_9STRA) HSP 1 Score: 110 bits (276), Expect = 7.470e-27 Identity = 59/111 (53.15%), Postives = 78/111 (70.27%), Query Frame = 1
Query: 1 QYHKSGKHCIEYRRSGEKRWVSMQRTAFYIVERVQPSAERGEVKEMEPDPTEGLAPVE-KWNYQEDITPAFCTALSQLHRAYGCKIQETGHKTVGHTCVTDRDKVAARLVK 330
Q+HKSGKH +E+R+ EKRW+ M++ AFYI+ER P++E E E + D TEGLAPVE W + EDI+ + A S L + YG IQETGH T GHTC+TD D++ A+ VK
Sbjct: 117 QFHKSGKHYVEFRQVNEKRWLIMKKIAFYILER--PASEGKEESEFKEDETEGLAPVEDNWVFCEDISLDYTFAQSVLFKIYGNSIQETGHLTKGHTCLTDADRLNAQYVK 225
BLAST of mRNA_H-paniculata_contig31321.8460.1 vs. uniprot
Match: A0A7S0SP71_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SP71_9STRA) HSP 1 Score: 108 bits (271), Expect = 2.970e-25 Identity = 59/112 (52.68%), Postives = 74/112 (66.07%), Query Frame = 1
Query: 1 QYHKSGKHCIEYRRSGEKRWVSMQRTAFYIVERVQPSAERGEVKEMEPDPTEG-LAPVE-KWNYQEDITPAFCTALSQLHRAYGCKIQETGHKTVGHTCVTDRDKVAARLVK 330
Q+HKSGKH +E+R GEKRW++M++ AFYIVER Q + E K+ + +G LAP+E W Y ED+T F S L + YG IQETGHKT GH CVTD DK AR+ K
Sbjct: 114 QFHKSGKHFVEFRLVGEKRWLNMKKVAFYIVERPQMLMDHCEFKDDDYGDIDGSLAPIEDNWVYVEDLTLEFAFVQSLLFKIYGASIQETGHKTKGHVCVTDSDKERARVGK 225
BLAST of mRNA_H-paniculata_contig31321.8460.1 vs. uniprot
Match: A0A7S3NGR3_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NGR3_9STRA) HSP 1 Score: 102 bits (253), Expect = 6.010e-23 Identity = 54/107 (50.47%), Postives = 70/107 (65.42%), Query Frame = 1
Query: 1 QYHK-SGKHCIEYRRSGEKRWVSMQRTAFYIVERVQPSAERGEVKEMEPD---PTEGLAPVEKWNYQEDITPAFCTALSQLHRAYGCKIQETGHKTVGHTCVTDRDK 309
QYH+ SGKHC+E+R++ +RW+ M RTAFYIV+R + E KE PD T G E W + ED++ + A S LH YG ++QETGHKTVGHTCVT+ DK
Sbjct: 83 QYHRTSGKHCVEFRQTNARRWLVMLRTAFYIVDRCNSTLSE-ETKE--PDGIFTTPGKNCTEAWTFAEDLSLLYAKAQSTLHECYGSRVQETGHKTVGHTCVTEEDK 186
BLAST of mRNA_H-paniculata_contig31321.8460.1 vs. uniprot
Match: A0A7S3ZW16_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZW16_9STRA) HSP 1 Score: 101 bits (251), Expect = 7.050e-23 Identity = 55/104 (52.88%), Postives = 67/104 (64.42%), Query Frame = 1
Query: 1 QYHKS-GKHCIEYRRSGEKRWVSMQRTAFYIVERVQPSAERGEVKEMEPDPTEGLAPVEKWNYQEDITPAFCTALSQLHRAYGCKIQETGHKTVGHTCVTDRDK 309
QYH+S GKHC+E+R SG +RW+ M RTAFYIV+R E KE E P A E W + ED++ AF A S LH YG + QETGHKT+GH CVTD D+
Sbjct: 70 QYHRSSGKHCVEFRHSGARRWLLMLRTAFYIVDR---GTCDEETKEPEGLPVLRNARDEPWTFAEDLSLAFAKAQSVLHDCYGGRTQETGHKTLGHVCVTDDDR 170
BLAST of mRNA_H-paniculata_contig31321.8460.1 vs. uniprot
Match: A0A8J2WX67_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WX67_9STRA) HSP 1 Score: 101 bits (251), Expect = 1.470e-22 Identity = 55/104 (52.88%), Postives = 67/104 (64.42%), Query Frame = 1
Query: 1 QYHKS-GKHCIEYRRSGEKRWVSMQRTAFYIVERVQPSAERGEVKEMEPDPTEGLAPVEKWNYQEDITPAFCTALSQLHRAYGCKIQETGHKTVGHTCVTDRDK 309
QYH+S GKHC+E+R SG +RW+ M RTAFYIV+R E KE E P A E W + ED++ AF A S LH YG + QETGHKT+GH CVTD D+
Sbjct: 70 QYHRSSGKHCVEFRHSGARRWLLMLRTAFYIVDR---GTCDEETKEPEGLPVLRNARDEPWTFAEDLSLAFAKAQSVLHDCYGGRTQETGHKTLGHVCVTDDDR 170
BLAST of mRNA_H-paniculata_contig31321.8460.1 vs. uniprot
Match: A0A7S2SB25_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SB25_9STRA) HSP 1 Score: 94.7 bits (234), Expect = 2.890e-20 Identity = 52/110 (47.27%), Postives = 72/110 (65.45%), Query Frame = 1
Query: 4 YHKSGKHCIEYRRSGEKRWVSMQRTAFYIVERVQPS-AERGEVKEMEPDPTEGLAPVEKWNYQEDITPAFCTALSQLHRAYGCKIQETGHKTVGHTCVTDRDKVAARLVK 330
Y K+GKH + ++ S +KR + M +TAFYIVER PS E KE D + LAPVEKWN+ EDI+ + A + +HR +G KI ETGH+TVGH C+++ D+ A+ K
Sbjct: 177 YAKNGKHVVHFKLSDQKRGLHMLKTAFYIVER--PSDMNSSESKEAHEDSS--LAPVEKWNFCEDISHEYIQAQTVVHRVFGNKIHETGHRTVGHMCLSEEDRQLAKKTK 282
BLAST of mRNA_H-paniculata_contig31321.8460.1 vs. uniprot
Match: A0A6U4GL22_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4GL22_9STRA) HSP 1 Score: 85.5 bits (210), Expect = 4.910e-17 Identity = 44/104 (42.31%), Postives = 63/104 (60.58%), Query Frame = 1
Query: 13 SGKHCIEYRRSGEKRWVSMQRTAFYIVE--RVQPSAERGEVKEMEPDPTEGLAPVEKWNYQEDITPAFCTALSQLHRAYGCKIQETGHKTVGHTCVTDRDKVAA 318
SGKH +E+ GE RW+ M +TA Y++ +++ + E EV +E P E ++Y EDI+ FC A S+L+ YG ++QETGHKT GH C+T DK A
Sbjct: 111 SGKHLVEFEGRGEARWMRMSKTALYVIRPSKIKEAQETKEVDGIESGPRS----FEHYDYVEDISEDFCLAQSRLYHIYGRRVQETGHKTSGHVCITMNDKEQA 210
BLAST of mRNA_H-paniculata_contig31321.8460.1 vs. uniprot
Match: A0A4D9D5D5_9STRA (C2H2-type domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D5D5_9STRA) HSP 1 Score: 75.9 bits (185), Expect = 1.160e-13 Identity = 48/138 (34.78%), Postives = 70/138 (50.72%), Query Frame = 1
Query: 13 SGKHCIEYRRSGEKRWVSMQRTAFYIVERVQ-----------------------------PSAERGEVKEMEPD---PTEGLAPVEK---WNYQEDITPAFCTALSQLHRAYGCKIQETGHKTVGHTCVTDRDKVAAR 321
+GKH I + GE RW+SM RTAF+I+ R P ++ + +E + D P+ LA ++ W Y E+I+ + A + +HRAYG +IQETGHKT GH CVT+ D+V A+
Sbjct: 88 AGKHRIVFEHVGESRWLSMLRTAFFIIRRPAAPSPCRSQRPSSSSLAPFDPFLPHSAGSVPESKDVDARERQKDRSAPSLALAQSKRVGHWTYVEEISLGYARAQAIMHRAYGNRIQETGHKTRGHLCVTETDRVLAQ 225 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig31321.8460.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 12
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig31321.8460.1 >prot_H-paniculata_contig31321.8460.1 ID=prot_H-paniculata_contig31321.8460.1|Name=mRNA_H-paniculata_contig31321.8460.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=117bp QYHKSGKHCIEYRRSGEKRWVSMQRTAFYIVERVQPSAERGEVKEMEPDPback to top mRNA from alignment at H-paniculata_contig31321:1069..2584- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig31321.8460.1 ID=mRNA_H-paniculata_contig31321.8460.1|Name=mRNA_H-paniculata_contig31321.8460.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1516bp|location=Sequence derived from alignment at H-paniculata_contig31321:1069..2584- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig31321:1069..2584- >mRNA_H-paniculata_contig31321.8460.1 ID=mRNA_H-paniculata_contig31321.8460.1|Name=mRNA_H-paniculata_contig31321.8460.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=702bp|location=Sequence derived from alignment at H-paniculata_contig31321:1069..2584- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |