mRNA_H-paniculata_contig31321.8460.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig31321.8460.1
Unique NamemRNA_H-paniculata_contig31321.8460.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig31321.8460.1 vs. uniprot
Match: D7FY73_ECTSI (Topoisomerase 6 subunit B n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY73_ECTSI)

HSP 1 Score: 194 bits (492), Expect = 1.180e-55
Identity = 91/110 (82.73%), Postives = 100/110 (90.91%), Query Frame = 1
Query:    1 QYHKSGKHCIEYRRSGEKRWVSMQRTAFYIVERVQPSAERGEVKEMEPDPTEGLAPVEKWNYQEDITPAFCTALSQLHRAYGCKIQETGHKTVGHTCVTDRDKVAARLVK 330
            QYHKSGKHC+EYRRSGEKRWV+M +TAFYIVER QP+   GEVKEMEPDPTEGLAP+EKW+Y EDI+P FC ALS LHRAYGC++QETGHKTVGHTCVTDRDKVAAR VK
Sbjct:  196 QYHKSGKHCVEYRRSGEKRWVNMLKTAFYIVERAQPTG--GEVKEMEPDPTEGLAPIEKWHYHEDISPEFCMALSLLHRAYGCRVQETGHKTVGHTCVTDRDKVAAREVK 303          
BLAST of mRNA_H-paniculata_contig31321.8460.1 vs. uniprot
Match: A0A6H5KB73_9PHAE (DOT1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB73_9PHAE)

HSP 1 Score: 189 bits (479), Expect = 7.090e-54
Identity = 88/110 (80.00%), Postives = 100/110 (90.91%), Query Frame = 1
Query:    1 QYHKSGKHCIEYRRSGEKRWVSMQRTAFYIVERVQPSAERGEVKEMEPDPTEGLAPVEKWNYQEDITPAFCTALSQLHRAYGCKIQETGHKTVGHTCVTDRDKVAARLVK 330
            QYHKSGKHC+EYRRSGEKRWV+M ++AFYIVER QP+   GEVKEME DPTEGLAP+EKW+Y+EDI+P FC ALS LHRAYGC++QETGH+TVGHTCVTDRDKVAAR VK
Sbjct:  193 QYHKSGKHCVEYRRSGEKRWVNMLKSAFYIVERAQPTG--GEVKEMESDPTEGLAPIEKWHYEEDISPEFCMALSLLHRAYGCRVQETGHRTVGHTCVTDRDKVAAREVK 300          
BLAST of mRNA_H-paniculata_contig31321.8460.1 vs. uniprot
Match: A0A7S3HRH5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HRH5_9STRA)

HSP 1 Score: 110 bits (276), Expect = 7.470e-27
Identity = 59/111 (53.15%), Postives = 78/111 (70.27%), Query Frame = 1
Query:    1 QYHKSGKHCIEYRRSGEKRWVSMQRTAFYIVERVQPSAERGEVKEMEPDPTEGLAPVE-KWNYQEDITPAFCTALSQLHRAYGCKIQETGHKTVGHTCVTDRDKVAARLVK 330
            Q+HKSGKH +E+R+  EKRW+ M++ AFYI+ER  P++E  E  E + D TEGLAPVE  W + EDI+  +  A S L + YG  IQETGH T GHTC+TD D++ A+ VK
Sbjct:  117 QFHKSGKHYVEFRQVNEKRWLIMKKIAFYILER--PASEGKEESEFKEDETEGLAPVEDNWVFCEDISLDYTFAQSVLFKIYGNSIQETGHLTKGHTCLTDADRLNAQYVK 225          
BLAST of mRNA_H-paniculata_contig31321.8460.1 vs. uniprot
Match: A0A7S0SP71_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SP71_9STRA)

HSP 1 Score: 108 bits (271), Expect = 2.970e-25
Identity = 59/112 (52.68%), Postives = 74/112 (66.07%), Query Frame = 1
Query:    1 QYHKSGKHCIEYRRSGEKRWVSMQRTAFYIVERVQPSAERGEVKEMEPDPTEG-LAPVE-KWNYQEDITPAFCTALSQLHRAYGCKIQETGHKTVGHTCVTDRDKVAARLVK 330
            Q+HKSGKH +E+R  GEKRW++M++ AFYIVER Q   +  E K+ +    +G LAP+E  W Y ED+T  F    S L + YG  IQETGHKT GH CVTD DK  AR+ K
Sbjct:  114 QFHKSGKHFVEFRLVGEKRWLNMKKVAFYIVERPQMLMDHCEFKDDDYGDIDGSLAPIEDNWVYVEDLTLEFAFVQSLLFKIYGASIQETGHKTKGHVCVTDSDKERARVGK 225          
BLAST of mRNA_H-paniculata_contig31321.8460.1 vs. uniprot
Match: A0A7S3NGR3_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NGR3_9STRA)

HSP 1 Score: 102 bits (253), Expect = 6.010e-23
Identity = 54/107 (50.47%), Postives = 70/107 (65.42%), Query Frame = 1
Query:    1 QYHK-SGKHCIEYRRSGEKRWVSMQRTAFYIVERVQPSAERGEVKEMEPD---PTEGLAPVEKWNYQEDITPAFCTALSQLHRAYGCKIQETGHKTVGHTCVTDRDK 309
            QYH+ SGKHC+E+R++  +RW+ M RTAFYIV+R   +    E KE  PD    T G    E W + ED++  +  A S LH  YG ++QETGHKTVGHTCVT+ DK
Sbjct:   83 QYHRTSGKHCVEFRQTNARRWLVMLRTAFYIVDRCNSTLSE-ETKE--PDGIFTTPGKNCTEAWTFAEDLSLLYAKAQSTLHECYGSRVQETGHKTVGHTCVTEEDK 186          
BLAST of mRNA_H-paniculata_contig31321.8460.1 vs. uniprot
Match: A0A7S3ZW16_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZW16_9STRA)

HSP 1 Score: 101 bits (251), Expect = 7.050e-23
Identity = 55/104 (52.88%), Postives = 67/104 (64.42%), Query Frame = 1
Query:    1 QYHKS-GKHCIEYRRSGEKRWVSMQRTAFYIVERVQPSAERGEVKEMEPDPTEGLAPVEKWNYQEDITPAFCTALSQLHRAYGCKIQETGHKTVGHTCVTDRDK 309
            QYH+S GKHC+E+R SG +RW+ M RTAFYIV+R        E KE E  P    A  E W + ED++ AF  A S LH  YG + QETGHKT+GH CVTD D+
Sbjct:   70 QYHRSSGKHCVEFRHSGARRWLLMLRTAFYIVDR---GTCDEETKEPEGLPVLRNARDEPWTFAEDLSLAFAKAQSVLHDCYGGRTQETGHKTLGHVCVTDDDR 170          
BLAST of mRNA_H-paniculata_contig31321.8460.1 vs. uniprot
Match: A0A8J2WX67_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WX67_9STRA)

HSP 1 Score: 101 bits (251), Expect = 1.470e-22
Identity = 55/104 (52.88%), Postives = 67/104 (64.42%), Query Frame = 1
Query:    1 QYHKS-GKHCIEYRRSGEKRWVSMQRTAFYIVERVQPSAERGEVKEMEPDPTEGLAPVEKWNYQEDITPAFCTALSQLHRAYGCKIQETGHKTVGHTCVTDRDK 309
            QYH+S GKHC+E+R SG +RW+ M RTAFYIV+R        E KE E  P    A  E W + ED++ AF  A S LH  YG + QETGHKT+GH CVTD D+
Sbjct:   70 QYHRSSGKHCVEFRHSGARRWLLMLRTAFYIVDR---GTCDEETKEPEGLPVLRNARDEPWTFAEDLSLAFAKAQSVLHDCYGGRTQETGHKTLGHVCVTDDDR 170          
BLAST of mRNA_H-paniculata_contig31321.8460.1 vs. uniprot
Match: A0A7S2SB25_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SB25_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 2.890e-20
Identity = 52/110 (47.27%), Postives = 72/110 (65.45%), Query Frame = 1
Query:    4 YHKSGKHCIEYRRSGEKRWVSMQRTAFYIVERVQPS-AERGEVKEMEPDPTEGLAPVEKWNYQEDITPAFCTALSQLHRAYGCKIQETGHKTVGHTCVTDRDKVAARLVK 330
            Y K+GKH + ++ S +KR + M +TAFYIVER  PS     E KE   D +  LAPVEKWN+ EDI+  +  A + +HR +G KI ETGH+TVGH C+++ D+  A+  K
Sbjct:  177 YAKNGKHVVHFKLSDQKRGLHMLKTAFYIVER--PSDMNSSESKEAHEDSS--LAPVEKWNFCEDISHEYIQAQTVVHRVFGNKIHETGHRTVGHMCLSEEDRQLAKKTK 282          
BLAST of mRNA_H-paniculata_contig31321.8460.1 vs. uniprot
Match: A0A6U4GL22_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4GL22_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 4.910e-17
Identity = 44/104 (42.31%), Postives = 63/104 (60.58%), Query Frame = 1
Query:   13 SGKHCIEYRRSGEKRWVSMQRTAFYIVE--RVQPSAERGEVKEMEPDPTEGLAPVEKWNYQEDITPAFCTALSQLHRAYGCKIQETGHKTVGHTCVTDRDKVAA 318
            SGKH +E+   GE RW+ M +TA Y++   +++ + E  EV  +E  P       E ++Y EDI+  FC A S+L+  YG ++QETGHKT GH C+T  DK  A
Sbjct:  111 SGKHLVEFEGRGEARWMRMSKTALYVIRPSKIKEAQETKEVDGIESGPRS----FEHYDYVEDISEDFCLAQSRLYHIYGRRVQETGHKTSGHVCITMNDKEQA 210          
BLAST of mRNA_H-paniculata_contig31321.8460.1 vs. uniprot
Match: A0A4D9D5D5_9STRA (C2H2-type domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D5D5_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 1.160e-13
Identity = 48/138 (34.78%), Postives = 70/138 (50.72%), Query Frame = 1
Query:   13 SGKHCIEYRRSGEKRWVSMQRTAFYIVERVQ-----------------------------PSAERGEVKEMEPD---PTEGLAPVEK---WNYQEDITPAFCTALSQLHRAYGCKIQETGHKTVGHTCVTDRDKVAAR 321
            +GKH I +   GE RW+SM RTAF+I+ R                               P ++  + +E + D   P+  LA  ++   W Y E+I+  +  A + +HRAYG +IQETGHKT GH CVT+ D+V A+
Sbjct:   88 AGKHRIVFEHVGESRWLSMLRTAFFIIRRPAAPSPCRSQRPSSSSLAPFDPFLPHSAGSVPESKDVDARERQKDRSAPSLALAQSKRVGHWTYVEEISLGYARAQAIMHRAYGNRIQETGHKTRGHLCVTETDRVLAQ 225          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig31321.8460.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
D7FY73_ECTSI1.180e-5582.73Topoisomerase 6 subunit B n=1 Tax=Ectocarpus silic... [more]
A0A6H5KB73_9PHAE7.090e-5480.00DOT1 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A7S3HRH5_9STRA7.470e-2753.15Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A7S0SP71_9STRA2.970e-2552.68Hypothetical protein (Fragment) n=1 Tax=Chromulina... [more]
A0A7S3NGR3_9STRA6.010e-2350.47Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A7S3ZW16_9STRA7.050e-2352.88Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A8J2WX67_9STRA1.470e-2252.88Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
A0A7S2SB25_9STRA2.890e-2047.27Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A6U4GL22_9STRA4.910e-1742.31Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A4D9D5D5_9STRA1.160e-1334.78C2H2-type domain-containing protein n=2 Tax=Monodo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig31321contigH-paniculata_contig31321:1069..2584 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score193.7
Seed ortholog evalue4.7e-47
Seed eggNOG ortholog2880.D7FY73
Hectar predicted targeting categoryother localisation
EggNOG OGs2C39T@1,2STY5@2759
Ec32 ortholog descriptionDOT1 histone methyltransferase
Ec32 orthologEc-24_003550.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size351
Cds size351
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig31321.8460.1prot_H-paniculata_contig31321.8460.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig31321 1069..2584 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929965.0047743-CDS-H-paniculata_contig31321:1068..11611622929965.0047743-CDS-H-paniculata_contig31321:1068..1161Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31321 1069..1161 -
1691481089.5240998-CDS-H-paniculata_contig31321:1068..11611691481089.5240998-CDS-H-paniculata_contig31321:1068..1161Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31321 1069..1161 -
1622929965.017993-CDS-H-paniculata_contig31321:1624..17081622929965.017993-CDS-H-paniculata_contig31321:1624..1708Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31321 1625..1708 -
1691481089.5356562-CDS-H-paniculata_contig31321:1624..17081691481089.5356562-CDS-H-paniculata_contig31321:1624..1708Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31321 1625..1708 -
1622929965.0354302-CDS-H-paniculata_contig31321:2410..25841622929965.0354302-CDS-H-paniculata_contig31321:2410..2584Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31321 2411..2584 -
1691481089.5455275-CDS-H-paniculata_contig31321:2410..25841691481089.5455275-CDS-H-paniculata_contig31321:2410..2584Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31321 2411..2584 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig31321.8460.1

>prot_H-paniculata_contig31321.8460.1 ID=prot_H-paniculata_contig31321.8460.1|Name=mRNA_H-paniculata_contig31321.8460.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=117bp
QYHKSGKHCIEYRRSGEKRWVSMQRTAFYIVERVQPSAERGEVKEMEPDP
TEGLAPVEKWNYQEDITPAFCTALSQLHRAYGCKIQETGHKTVGHTCVTD
RDKVAARLVKVRLASF*
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mRNA from alignment at H-paniculata_contig31321:1069..2584-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig31321.8460.1 ID=mRNA_H-paniculata_contig31321.8460.1|Name=mRNA_H-paniculata_contig31321.8460.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1516bp|location=Sequence derived from alignment at H-paniculata_contig31321:1069..2584- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGTATCACAAATCAGGCAAGCACTGCATCGAGTATCGCCGGTCCGGGGA AAAGCGATGGGTCAGTATGCAGCGAACGGCGTTCTATATCGTGGAGCGTG TGCAGCCGAGCGCGGAGCGTGGGGAGGTCAAGGAAATGGAGCCGGATCCA ACGGAGGGCTTGGCACCTGTAGAGGTATGTATATAGTTCACTGAACAGGG ACCCAACAAAGCCCCGAACAAAGAACCCTGAAATAGAAGACCAAAGCCTA TTTAGGCTATTTTTGGTCACGGGCCGCAGGTGGTTATGTATGACGTACGT AAGCTGCAAAACGTGTGCCCGACCAATCATAGCCCAAAGCAACAACTACA GACATTCCCAGCAGACCCCCCCCCCCGCCCAACAACCCGACGCCTAGGCT GCGTGCAACAGAATACGAAGTGAATTATGAGCAACAGTTTATATTCATGA ACTCCTAGTTTTGTGGATCATAATCTGGTACAAGTGCATATCAGTCAGAA AGGTTGAACATTTTGCCCCTGGTCCCATGGAGTTTTAAATGTATATGTAT ATATATATATGAATATATAACTGTGGTGGCCACCTGAACAGGGGTAATAA TCGCCTAATGTCCATCGACGACAGTTACCCCTATTTTCACATAATAATAG TAATAGTCATTTACGAGTGCCAAAGCATTGACGCTACTTCATACCCTGGT ACATGACTAATAAACACTAACGTATTTTTCGGTCTATCGTTGTTGTTGGT TCTTGCCGCGTTCTTCTGTGCTCCGTGAATACCCGACCTGGGGACTGTGT GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGGCGTTTTTGGGCATGGTGG CGGATGCTAACGCTGAAAATAAGAAGAAGTGGAATTATCAGGAGGATATT ACTCCGGCGTTTTGCACCGCGCTGTCCCAGCTGCACCGGGCTTACGGCTG CAAGATACAGGTGAGAGGAACACGGGGAAGGAAGGGCAGCTTGGTCCATG CACGGCTCTCGAACTCACTTTCATGAAGTTGTCTTCGAGTGCTCTGAACG ACACAGCCCTTGATGGTATCTTATCAGAAGGTCATCGCTCACTTGTGCCG CTTGGGACGTGTGAGATGTGTAGAGGTGGTTGTATTTGGGAATAGTATTT TGTCTTTTTTTTTCTTTTTTTTCCACATCTGTTTGGTTTTCAGTTGGTCT GTTTTTGTTTCTTTCTTTAACTTTTTTCTTTTTTTTGTCGTTTTTTGTCG TTATTTGTCCTCTTGCTGTGTGATTATTTTCTTATTCTTTTTTCCGTCGT CTGTGTTTTTGTATTCATTTTCTCCTGTTTCATATCCGTTGACACTTTTT TTCCTTTTTTTCCTTTTTTTCCTTTTTTTTTCTTTTTTTTTCTTCAATAT GTACATGAATACATGGTAAACAGGAGACGGGCCACAAGACAGTAGGACAC ACTTGTGTGACCGATCGAGATAAGGTCGCGGCCAGATTGGTCAAGGTGAG ACTAGCCTCTTTTTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig31321:1069..2584-

>mRNA_H-paniculata_contig31321.8460.1 ID=mRNA_H-paniculata_contig31321.8460.1|Name=mRNA_H-paniculata_contig31321.8460.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=702bp|location=Sequence derived from alignment at H-paniculata_contig31321:1069..2584- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGTATCACAAATCAGGCAAGCACTGCATCGAGTATCGCCGGTCCGGGGA
AAAGCGATGGGTCAGTATGCAGCGAACGGCGTTCTATATCGTGGAGCGTG
TGCAGCCGAGCGCGGAGCGTGGGGAGGTCAAGGAAATGGAGCCGGATCCA
ACGGAGGGCTTGGCACCTGTAGAGCAGTATCACAAATCAGGCAAGCACTG
CATCGAGTATCGCCGGTCCGGGGAAAAGCGATGGGTCAGTATGCAGCGAA
CGGCGTTCTATATCGTGGAGCGTGTGCAGCCGAGCGCGGAGCGTGGGGAG
GTCAAGGAAATGGAGCCGGATCCAACGGAGGGCTTGGCACCTGTAGAGAA
GTGGAATTATCAGGAGGATATTACTCCGGCGTTTTGCACCGCGCTGTCCC
AGCTGCACCGGGCTTACGGCTGCAAGATACAGAAGTGGAATTATCAGGAG
GATATTACTCCGGCGTTTTGCACCGCGCTGTCCCAGCTGCACCGGGCTTA
CGGCTGCAAGATACAGGAGACGGGCCACAAGACAGTAGGACACACTTGTG
TGACCGATCGAGATAAGGTCGCGGCCAGATTGGTCAAGGTGAGACTAGCC
TCTTTTTAGGAGACGGGCCACAAGACAGTAGGACACACTTGTGTGACCGA
TCGAGATAAGGTCGCGGCCAGATTGGTCAAGGTGAGACTAGCCTCTTTTT
AG
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