mRNA_H-paniculata_contig31258.8448.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig31258.8448.1
Unique NamemRNA_H-paniculata_contig31258.8448.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig31258.8448.1 vs. uniprot
Match: A0A6H5KPY7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPY7_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 1.240e-7
Identity = 30/66 (45.45%), Postives = 39/66 (59.09%), Query Frame = 3 
Query:  180 RSLCMDALNIVLTESYSKRGGYLPIKTFQLVSLQMCIMCREFSTLHVRVAIDTPRRLWAIAADQPS 377
            RS C+  L + L E+   +  Y   K  QL SL++C+ CR + TLH+ V   TPRRL A AAD PS
Sbjct:  133 RSSCLKTLTVALNETCDGKSWYTSTKELQLASLELCMACRHYQTLHLTVDAHTPRRLLA-AADAPS 197
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BLAST of mRNA_H-paniculata_contig31258.8448.1 vs. uniprot
Match: D7G2S9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2S9_ECTSI)

HSP 1 Score: 57.4 bits (137), Expect = 7.270e-7
Identity = 29/73 (39.73%), Postives = 40/73 (54.79%), Query Frame = 3 
Query:  180 RSLCMDALNIVLTESYSKRGGYLPIKTFQLVSLQMCIMCREFSTLHVRVAIDTPRRLWAIAADQPSRGMVMAR 398
            RS C++AL I L E+ +    Y   K  QL SL+ C+ CR + TLH++V    PRRL A A   P    ++ R
Sbjct:  110 RSSCLNALVIALNETCNGESWYTSTKELQLASLEFCVACRNYQTLHLKVDAQIPRRLLARADAPPPHPELLCR 182
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BLAST of mRNA_H-paniculata_contig31258.8448.1 vs. uniprot
Match: D7FUL5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUL5_ECTSI)

HSP 1 Score: 53.1 bits (126), Expect = 1.940e-5
Identity = 28/66 (42.42%), Postives = 38/66 (57.58%), Query Frame = 3 
Query:  177 GRSLCMDALNIVLTESYSKRGGYLPIKTFQLVSLQMCIMCREFSTLHVRVAIDTPRRLWAIAADQP 374
            GRS C++A+ + L+E+   +  Y   K  QL SL  C  CR   T+H++V    PRRL A AAD P
Sbjct:  132 GRSSCLNAIVVALSETCDGKSWYTSTKELQLASLGFCTACRNHQTVHLKVDEHIPRRLLA-AADAP 196
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig31258.8448.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KPY7_9PHAE1.240e-745.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G2S9_ECTSI7.270e-739.73Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FUL5_ECTSI1.940e-542.42Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig31258contigH-paniculata_contig31258:358..2161 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size434
Cds size324
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig31258.8448.1prot_H-paniculata_contig31258.8448.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig31258 358..2051 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929962.734327-CDS-H-paniculata_contig31258:357..6141622929962.734327-CDS-H-paniculata_contig31258:357..614Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31258 358..614 -
1691481088.3701077-CDS-H-paniculata_contig31258:357..6141691481088.3701077-CDS-H-paniculata_contig31258:357..614Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31258 358..614 -
1622929962.7500343-CDS-H-paniculata_contig31258:1984..20511622929962.7500343-CDS-H-paniculata_contig31258:1984..2051Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31258 1985..2051 -
1691481088.3778508-CDS-H-paniculata_contig31258:1984..20511691481088.3778508-CDS-H-paniculata_contig31258:1984..2051Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31258 1985..2051 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929962.767386-UTR-H-paniculata_contig31258:2051..21611622929962.767386-UTR-H-paniculata_contig31258:2051..2161Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig31258 2052..2161 -
1691481088.3898222-UTR-H-paniculata_contig31258:2051..21611691481088.3898222-UTR-H-paniculata_contig31258:2051..2161Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig31258 2052..2161 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig31258.8448.1

>prot_H-paniculata_contig31258.8448.1 ID=prot_H-paniculata_contig31258.8448.1|Name=mRNA_H-paniculata_contig31258.8448.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=108bp
MYSVGSKAAAAGTSQDKVDRPSGRSLCMDALNIVLTESYSKRGGYLPIKT
FQLVSLQMCIMCREFSTLHVRVAIDTPRRLWAIAADQPSRGMVMARPYQR
QKKRRRNM
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mRNA from alignment at H-paniculata_contig31258:358..2161-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig31258.8448.1 ID=mRNA_H-paniculata_contig31258.8448.1|Name=mRNA_H-paniculata_contig31258.8448.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1804bp|location=Sequence derived from alignment at H-paniculata_contig31258:358..2161- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCTGTATGGCCAGTCAAGGTGTTGCAGCAAATCCGCACTGTACGGTCTCT
CATCGTCGCAGCCTCTGATACGTAGGTGGTGCTTTTGAGGGCTGCACGTC
CTGCTCTACGATGTACTCCGTCGGATCGAAAGCGGCGGCAGCTGGCACCT
CTCAAGACAAGGTGGATAGACCATCGGGTGAGAGAGGCGCCAGACAGGTC
TTGACACTGTATGAATCTATCGATTTAGGATAGTATGTATCAACCGACGG
TAATACGCTGACTGCCAAGGGCATGTCTGTGCCAAGTAATAGGGTGAGGC
CTCTGGGATTCTGAAGGTGTCATGATGGCTAAAATAATATTAAAAAACAG
CACATTGTCTGATGGTATTAAAGAAAATAAGATGCACTGCCGGAGATCAA
GTCACTGACATGAGACACATTTGACAGTGAAGAAAAGGTTTGAGAAGCAG
GCTGTCCGTATCAAGAGACAGTTCATATTGTGGGACTCGCTACTAGTTTT
ACTTTTGATACCCGTATCGATGGAAATTCTGTTATTCCAATGAGTAGAGA
AATTAATAATGTGATCTCGGGATATAATTGCGCTATCCCCCGATTATTTG
GTTGTCAGCTGTCCTCTTGACAGCTTTTGTCAAGGCGTGCTCGACTGGCG
TGTATTTCGCGTATTCACTTTTTCATTCTACCTTCGATATGTGGAAAATC
TTTCAAGTCACACTGGAATCGGTGTTGATTCAACAATAGTGTGAACGTGT
TCAACCTATGCTCTAGCGCCCCCCCCACCCCCCCAACGCCCTTGCAGAAC
ACTCAAAACATACTCGTAGAAAGTAAGCAGCATGGTATGCGTTCTTCTAT
TTATGAACAAGGATTCGGAAAGTGAAAGGATTTTTGCAAAATTCGAAGGT
TCTGGGCTTAATTGTTTTCGAAGTCACGGCGCTTTGACGGTTTTTGAAAT
ACCTTACGCTGAGCAAGATTGAATTATCTCGGAACAACTCGCTGAACAAA
TTTGGAGCGTACTCATGGTCGTAATCCTCGGATATGAATGTTTCCGTTCC
TCGCGCGAGAGGGCTCAAACGATGTGCACGATTGTGAGGAGAAAACGTTC
ATCTGTTCGATGACCTCTATATACATGAATTTTCAGTGGTCGAGATGCTT
GGTAAGTAGGCCGAGATAATTCAGAGTAGTGTAGTTTAGTGCTCACTTAT
GGTGCTGAGGGTTTGGAAGCGAGATTTCGCCGAGACCATGATGTCGGCCA
CATTTCCTAAAGCATGCAGTCGAAAGAGGAGCCATGGCGGCCACTGACTA
TCGTACTAGTAATTGTACCCATTACGATCCAGCGGCGCTTATCGCTGAGC
AACCATATGAGACCGAGTTTTCGTTGCGTGAAATTATCTTCGTGGATGGA
CAGCGATAGTAGGACTGCAGTGATGCTTGTGTACGGCGACACCGTATTTT
GACTCTAGTAATACTCGTGTTCGGCCATTGCACCGTTGGGCACAACTGCA
CTCGTACATGTGAGCCAGCGATGATTGTTCGGTTGCCGTTGCTTCAGGCC
GTAGCCTCTGTATGGATGCTTTGAACATCGTGCTCACCGAGTCTTACTCA
AAGCGGGGGGGTTACTTGCCCATCAAGACGTTTCAGCTGGTGTCGCTACA
GATGTGCATAATGTGCCGCGAGTTCAGTACGCTACACGTGAGGGTGGCGA
TAGACACACCTCGACGACTGTGGGCGATTGCTGCCGATCAGCCATCGCGT
GGTATGGTCATGGCGAGGCCCTATCAACGACAAAAAAAAAGAAGAAGAAA
CATG
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Coding sequence (CDS) from alignment at H-paniculata_contig31258:358..2161-

>mRNA_H-paniculata_contig31258.8448.1 ID=mRNA_H-paniculata_contig31258.8448.1|Name=mRNA_H-paniculata_contig31258.8448.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=648bp|location=Sequence derived from alignment at H-paniculata_contig31258:358..2161- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTACTCCGTCGGATCGAAAGCGGCGGCAGCTGGCACCTCTCAAGACAA
GGTGGATAGACCATCGGATGTACTCCGTCGGATCGAAAGCGGCGGCAGCT
GGCACCTCTCAAGACAAGGTGGATAGACCATCGGGCCGTAGCCTCTGTAT
GGATGCTTTGAACATCGTGCTCACCGAGTCTTACTCAAAGCGGGGGGGTT
ACTTGCCCATCAAGACGTTTCAGCTGGTGTCGCTACAGATGTGCATAATG
TGCCGCGAGTTCAGTACGCTACACGTGAGGGTGGCGATAGACACACCTCG
ACGACTGTGGGCGATTGCTGCCGATCAGCCATCGCGTGGTATGGTCATGG
CGAGGCCCTATCAACGACAAAAAAAAAGAAGAAGAAACATGGCCGTAGCC
TCTGTATGGATGCTTTGAACATCGTGCTCACCGAGTCTTACTCAAAGCGG
GGGGGTTACTTGCCCATCAAGACGTTTCAGCTGGTGTCGCTACAGATGTG
CATAATGTGCCGCGAGTTCAGTACGCTACACGTGAGGGTGGCGATAGACA
CACCTCGACGACTGTGGGCGATTGCTGCCGATCAGCCATCGCGTGGTATG
GTCATGGCGAGGCCCTATCAACGACAAAAAAAAAGAAGAAGAAACATG
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