prot_H-paniculata_contig31178.8429.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig31178.8429.1
Unique Nameprot_H-paniculata_contig31178.8429.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length86
Homology
BLAST of mRNA_H-paniculata_contig31178.8429.1 vs. uniprot
Match: D8LBC7_ECTSI (tRNA Pseudouridine Synthase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBC7_ECTSI)

HSP 1 Score: 112 bits (281), Expect = 3.730e-27
Identity = 52/81 (64.20%), Postives = 66/81 (81.48%), Query Frame = 0
Query:    1 MKGHRVQAETVESLRAVLKQFCGTKNYHNFTNNKKGGDSSCNRYITSFTTSDPWESDHMEWIRLTVTGQSFLLHQIRKMVS 81
            +KG+R++ + +E LR  LK F GTKNYHN+TN+KK  D+SC R ITSFT SDP+E + MEWIRLTV GQSF++HQIRKMV+
Sbjct:  492 LKGYRLKPDRLEDLRETLKGFLGTKNYHNYTNHKKATDASCKRLITSFTASDPFEHEGMEWIRLTVGGQSFIMHQIRKMVA 572          
BLAST of mRNA_H-paniculata_contig31178.8429.1 vs. uniprot
Match: A0A1S8W0L9_9FUNG (tRNA pseudouridine(38-40) synthase n=1 Tax=Batrachochytrium salamandrivorans TaxID=1357716 RepID=A0A1S8W0L9_9FUNG)

HSP 1 Score: 88.6 bits (218), Expect = 7.180e-19
Identity = 41/81 (50.62%), Postives = 56/81 (69.14%), Query Frame = 0
Query:    1 MKGHRVQAETVESLRAVLKQFCGTKNYHNFTNNKKGGDSSCNRYITSFTTSDPWESDHMEWIRLTVTGQSFLLHQIRKMVS 81
            + G+RV A+ +++ R++L ++ GT NYHNFT  +K  D S  RYI SF  SDP+    MEW+ L V GQSF+LHQIRKM+ 
Sbjct:  299 LHGYRVAADKLDTFRSILSEYVGTHNYHNFTLGRKFDDKSSVRYIISFACSDPFIRSGMEWVSLKVKGQSFMLHQIRKMIG 379          
BLAST of mRNA_H-paniculata_contig31178.8429.1 vs. uniprot
Match: F4NY14_BATDJ (PseudoU_synth_1 domain-containing protein n=2 Tax=Batrachochytrium dendrobatidis TaxID=109871 RepID=F4NY14_BATDJ)

HSP 1 Score: 88.6 bits (218), Expect = 1.130e-18
Identity = 41/85 (48.24%), Postives = 57/85 (67.06%), Query Frame = 0
Query:    1 MKGHRVQAETVESLRAVLKQFCGTKNYHNFTNNKKGGDSSCNRYITSFTTSDPWESDHMEWIRLTVTGQSFLLHQIRKMVSCRGM 85
            ++G+R   + +E  RA+L ++ GT NYHNFT  +K  D S  RYI SF  S+P++ D+ EW+ L V GQSF+LHQIRKM+    M
Sbjct:  257 IQGYRTNHQELEEFRAILNEYVGTHNYHNFTIGRKFEDKSSIRYIISFICSEPFQRDNTEWVSLKVKGQSFMLHQIRKMIGLAVM 341          
BLAST of mRNA_H-paniculata_contig31178.8429.1 vs. uniprot
Match: UPI000F6866D7 (tRNA pseudouridine synthase A-like n=5 Tax=Penaeus TaxID=133894 RepID=UPI000F6866D7)

HSP 1 Score: 88.6 bits (218), Expect = 1.170e-18
Identity = 41/87 (47.13%), Postives = 57/87 (65.52%), Query Frame = 0
Query:    4 HRVQAETVESLRAVLKQFCGTKNYHNFTNNKKGGDSSCNRYITSFTTSDPWESDHMEWIRLTVTGQSFLLHQIRKMVS-----CRGM 85
            +R+  E +E LR+ LK + GT N+HNFT  KK  D+S NRYI      DP+E + +EW+ + + GQSF+LHQIRKM+      CRG+
Sbjct:  228 YRISPEVLEELRSTLKIYKGTHNFHNFTARKKASDASANRYIMEVECRDPFEREGLEWVVIKIKGQSFMLHQIRKMIGLVMAICRGL 314          
BLAST of mRNA_H-paniculata_contig31178.8429.1 vs. uniprot
Match: T1ELF5_HELRO (PseudoU_synth_1 domain-containing protein n=1 Tax=Helobdella robusta TaxID=6412 RepID=T1ELF5_HELRO)

HSP 1 Score: 88.2 bits (217), Expect = 1.330e-18
Identity = 39/80 (48.75%), Postives = 55/80 (68.75%), Query Frame = 0
Query:    2 KGHRVQAETVESLRAVLKQFCGTKNYHNFTNNKKGGDSSCNRYITSFTTSDPWESDHMEWIRLTVTGQSFLLHQIRKMVS 81
            + +R+  + +  L+ +L  FCGT N+HNFT+ KK GD+S  RYI  F   DP+  D +E+++LTV GQSF+LHQIRKM  
Sbjct:  189 ESYRITKDVLTHLQDILNCFCGTHNFHNFTSGKKSGDASAQRYIMEFKVGDPFIRDDIEYVKLTVKGQSFMLHQIRKMTG 268          
BLAST of mRNA_H-paniculata_contig31178.8429.1 vs. uniprot
Match: UPI0013901B24 (tRNA pseudouridine synthase A isoform X2 n=1 Tax=Nematostella vectensis TaxID=45351 RepID=UPI0013901B24)

HSP 1 Score: 87.8 bits (216), Expect = 1.340e-18
Identity = 42/79 (53.16%), Postives = 54/79 (68.35%), Query Frame = 0
Query:    3 GHRVQAETVESLRAVLKQFCGTKNYHNFTNNKKGGDSSCNRYITSFTTSDPWESDHMEWIRLTVTGQSFLLHQIRKMVS 81
            G+R+ AE +E +   L  + GTKNYHNFT+ KK  D S NRYI SF    P+E +  E++ LTV GQSF+LHQIRKM+ 
Sbjct:  196 GYRITAEKIEEINKALSNYKGTKNYHNFTSGKKFEDPSANRYIISFKCGKPFERNGREFVVLTVKGQSFVLHQIRKMIG 274          
BLAST of mRNA_H-paniculata_contig31178.8429.1 vs. uniprot
Match: A9V1F3_MONBE (Predicted protein n=1 Tax=Monosiga brevicollis TaxID=81824 RepID=A9V1F3_MONBE)

HSP 1 Score: 87.8 bits (216), Expect = 1.640e-18
Identity = 39/78 (50.00%), Postives = 52/78 (66.67%), Query Frame = 0
Query:    4 HRVQAETVESLRAVLKQFCGTKNYHNFTNNKKGGDSSCNRYITSFTTSDPWESDHMEWIRLTVTGQSFLLHQIRKMVS 81
            +RV    +   R  LK++ GT  +HNFT  K   D SC RYIT FT S+P+E + +EW+R+ V GQSF+LHQIRKM+ 
Sbjct:  165 YRVDEPKLTWFRETLKRYIGTHKFHNFTAGKSASDDSCRRYITDFTVSEPFEREGIEWVRIQVKGQSFILHQIRKMIG 242          
BLAST of mRNA_H-paniculata_contig31178.8429.1 vs. uniprot
Match: A0A5D6Y6U1_9STRA (PseudoU_synth_1 domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y6U1_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 2.070e-18
Identity = 44/78 (56.41%), Postives = 54/78 (69.23%), Query Frame = 0
Query:    5 RVQAETVESLRAVLKQFCGTKNYHNFTNNKKGGDSSCNRYITSFTTSDP-WESDHMEWIRLTVTGQSFLLHQIRKMVS 81
            R+   T   L AVL+QF GT N+HNFT+  +     CNRYITSF  +DP + ++HMEWIRL V GQSFLLH IRKM+ 
Sbjct:  225 RLDEATRAQLNAVLRQFEGTHNFHNFTSKLEPTSPKCNRYITSFAAADPPFVANHMEWIRLRVVGQSFLLHHIRKMIG 302          
BLAST of mRNA_H-paniculata_contig31178.8429.1 vs. uniprot
Match: UPI00138FA692 (tRNA pseudouridine synthase A isoform X1 n=1 Tax=Nematostella vectensis TaxID=45351 RepID=UPI00138FA692)

HSP 1 Score: 87.8 bits (216), Expect = 2.090e-18
Identity = 42/79 (53.16%), Postives = 54/79 (68.35%), Query Frame = 0
Query:    3 GHRVQAETVESLRAVLKQFCGTKNYHNFTNNKKGGDSSCNRYITSFTTSDPWESDHMEWIRLTVTGQSFLLHQIRKMVS 81
            G+R+ AE +E +   L  + GTKNYHNFT+ KK  D S NRYI SF    P+E +  E++ LTV GQSF+LHQIRKM+ 
Sbjct:  196 GYRITAEKIEEINKALSNYKGTKNYHNFTSGKKFEDPSANRYIISFKCGKPFERNGREFVVLTVKGQSFVLHQIRKMIG 274          
BLAST of mRNA_H-paniculata_contig31178.8429.1 vs. uniprot
Match: A0A226DGJ6_FOLCA (tRNA pseudouridine synthase A, mitochondrial n=1 Tax=Folsomia candida TaxID=158441 RepID=A0A226DGJ6_FOLCA)

HSP 1 Score: 87.8 bits (216), Expect = 2.270e-18
Identity = 40/78 (51.28%), Postives = 57/78 (73.08%), Query Frame = 0
Query:    4 HRVQAETVESLRAVLKQFCGTKNYHNFTNNKKGGDSSCNRYITSFTTSDPWESDHMEWIRLTVTGQSFLLHQIRKMVS 81
            +R+  + + SLRA+L+ + GTKN+HNFT+ +K  D S  RYI SFT S+P+  D +E++ L V GQSF+LHQIRKM+ 
Sbjct:  265 YRINEQVLTSLRAILESYVGTKNFHNFTSRRKPTDPSSKRYIISFTASEPFMKDGLEYLILRVKGQSFMLHQIRKMIG 342          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig31178.8429.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LBC7_ECTSI3.730e-2764.20tRNA Pseudouridine Synthase n=2 Tax=Ectocarpus Tax... [more]
A0A1S8W0L9_9FUNG7.180e-1950.62tRNA pseudouridine(38-40) synthase n=1 Tax=Batrach... [more]
F4NY14_BATDJ1.130e-1848.24PseudoU_synth_1 domain-containing protein n=2 Tax=... [more]
UPI000F6866D71.170e-1847.13tRNA pseudouridine synthase A-like n=5 Tax=Penaeus... [more]
T1ELF5_HELRO1.330e-1848.75PseudoU_synth_1 domain-containing protein n=1 Tax=... [more]
UPI0013901B241.340e-1853.16tRNA pseudouridine synthase A isoform X2 n=1 Tax=N... [more]
A9V1F3_MONBE1.640e-1850.00Predicted protein n=1 Tax=Monosiga brevicollis Tax... [more]
A0A5D6Y6U1_9STRA2.070e-1856.41PseudoU_synth_1 domain-containing protein n=1 Tax=... [more]
UPI00138FA6922.090e-1853.16tRNA pseudouridine synthase A isoform X1 n=1 Tax=N... [more]
A0A226DGJ6_FOLCA2.270e-1851.28tRNA pseudouridine synthase A, mitochondrial n=1 T... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR020097Pseudouridine synthase I, TruA, alpha/beta domainPFAMPF01416PseudoU_synth_1coord: 18..81
e-value: 4.3E-9
score: 36.8
IPR020095Pseudouridine synthase I, TruA, C-terminalGENE3D3.30.70.660coord: 1..83
e-value: 8.0E-33
score: 115.6
NoneNo IPR availablePANTHERPTHR11142:SF4TRNA PSEUDOURIDINE SYNTHASE Acoord: 6..81
IPR001406Pseudouridine synthase I, TruAPANTHERPTHR11142PSEUDOURIDYLATE SYNTHASEcoord: 6..81
IPR020103Pseudouridine synthase, catalytic domain superfamilySUPERFAMILY55120Pseudouridine synthasecoord: 4..82

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig31178contigH-paniculata_contig31178:390..1403 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig31178.8429.1mRNA_H-paniculata_contig31178.8429.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig31178 384..1403 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig31178.8429.1 ID=prot_H-paniculata_contig31178.8429.1|Name=mRNA_H-paniculata_contig31178.8429.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=86bp
MKGHRVQAETVESLRAVLKQFCGTKNYHNFTNNKKGGDSSCNRYITSFTT
SDPWESDHMEWIRLTVTGQSFLLHQIRKMVSCRGM*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR020097PsdUridine_synth_TruA_a/b_dom
IPR020095PsdUridine_synth_TruA_C
IPR001406PsdUridine_synth_TruA
IPR020103PsdUridine_synth_cat_dom_sf