mRNA_H-paniculata_contig31178.8429.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig31178.8429.1
Unique NamemRNA_H-paniculata_contig31178.8429.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig31178.8429.1 vs. uniprot
Match: D8LBC7_ECTSI (tRNA Pseudouridine Synthase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBC7_ECTSI)

HSP 1 Score: 114 bits (285), Expect = 1.160e-27
Identity = 53/83 (63.86%), Postives = 68/83 (81.93%), Query Frame = 1 
Query:    1 ERMKGHRVQAETVESLRAVLKQFCGTKNYHNFTNNKKGGDSSCNRYITSFTTSDPWESDHMEWIRLTVTGQSFLLHQIRKMVS 249
            E++KG+R++ + +E LR  LK F GTKNYHN+TN+KK  D+SC R ITSFT SDP+E + MEWIRLTV GQSF++HQIRKMV+
Sbjct:  490 EQLKGYRLKPDRLEDLRETLKGFLGTKNYHNYTNHKKATDASCKRLITSFTASDPFEHEGMEWIRLTVGGQSFIMHQIRKMVA 572
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BLAST of mRNA_H-paniculata_contig31178.8429.1 vs. uniprot
Match: F4NY14_BATDJ (PseudoU_synth_1 domain-containing protein n=2 Tax=Batrachochytrium dendrobatidis TaxID=109871 RepID=F4NY14_BATDJ)

HSP 1 Score: 89.4 bits (220), Expect = 6.490e-19
Identity = 42/87 (48.28%), Postives = 58/87 (66.67%), Query Frame = 1 
Query:    1 ERMKGHRVQAETVESLRAVLKQFCGTKNYHNFTNNKKGGDSSCNRYITSFTTSDPWESDHMEWIRLTVTGQSFLLHQIRKMVSCRGM 261
            E ++G+R   + +E  RA+L ++ GT NYHNFT  +K  D S  RYI SF  S+P++ D+ EW+ L V GQSF+LHQIRKM+    M
Sbjct:  255 ETIQGYRTNHQELEEFRAILNEYVGTHNYHNFTIGRKFEDKSSIRYIISFICSEPFQRDNTEWVSLKVKGQSFMLHQIRKMIGLAVM 341
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BLAST of mRNA_H-paniculata_contig31178.8429.1 vs. uniprot
Match: A0A1S8W0L9_9FUNG (tRNA pseudouridine(38-40) synthase n=1 Tax=Batrachochytrium salamandrivorans TaxID=1357716 RepID=A0A1S8W0L9_9FUNG)

HSP 1 Score: 88.6 bits (218), Expect = 7.760e-19
Identity = 41/81 (50.62%), Postives = 56/81 (69.14%), Query Frame = 1 
Query:    7 MKGHRVQAETVESLRAVLKQFCGTKNYHNFTNNKKGGDSSCNRYITSFTTSDPWESDHMEWIRLTVTGQSFLLHQIRKMVS 249
            + G+RV A+ +++ R++L ++ GT NYHNFT  +K  D S  RYI SF  SDP+    MEW+ L V GQSF+LHQIRKM+ 
Sbjct:  299 LHGYRVAADKLDTFRSILSEYVGTHNYHNFTLGRKFDDKSSVRYIISFACSDPFIRSGMEWVSLKVKGQSFMLHQIRKMIG 379
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BLAST of mRNA_H-paniculata_contig31178.8429.1 vs. uniprot
Match: UPI000F6866D7 (tRNA pseudouridine synthase A-like n=5 Tax=Penaeus TaxID=133894 RepID=UPI000F6866D7)

HSP 1 Score: 88.6 bits (218), Expect = 1.260e-18
Identity = 41/87 (47.13%), Postives = 57/87 (65.52%), Query Frame = 1 
Query:   16 HRVQAETVESLRAVLKQFCGTKNYHNFTNNKKGGDSSCNRYITSFTTSDPWESDHMEWIRLTVTGQSFLLHQIRKMVS-----CRGM 261
            +R+  E +E LR+ LK + GT N+HNFT  KK  D+S NRYI      DP+E + +EW+ + + GQSF+LHQIRKM+      CRG+
Sbjct:  228 YRISPEVLEELRSTLKIYKGTHNFHNFTARKKASDASANRYIMEVECRDPFEREGLEWVVIKIKGQSFMLHQIRKMIGLVMAICRGL 314
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BLAST of mRNA_H-paniculata_contig31178.8429.1 vs. uniprot
Match: T1ELF5_HELRO (PseudoU_synth_1 domain-containing protein n=1 Tax=Helobdella robusta TaxID=6412 RepID=T1ELF5_HELRO)

HSP 1 Score: 88.2 bits (217), Expect = 1.440e-18
Identity = 39/80 (48.75%), Postives = 55/80 (68.75%), Query Frame = 1 
Query:   10 KGHRVQAETVESLRAVLKQFCGTKNYHNFTNNKKGGDSSCNRYITSFTTSDPWESDHMEWIRLTVTGQSFLLHQIRKMVS 249
            + +R+  + +  L+ +L  FCGT N+HNFT+ KK GD+S  RYI  F   DP+  D +E+++LTV GQSF+LHQIRKM  
Sbjct:  189 ESYRITKDVLTHLQDILNCFCGTHNFHNFTSGKKSGDASAQRYIMEFKVGDPFIRDDIEYVKLTVKGQSFMLHQIRKMTG 268
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BLAST of mRNA_H-paniculata_contig31178.8429.1 vs. uniprot
Match: UPI0013901B24 (tRNA pseudouridine synthase A isoform X2 n=1 Tax=Nematostella vectensis TaxID=45351 RepID=UPI0013901B24)

HSP 1 Score: 87.8 bits (216), Expect = 1.440e-18
Identity = 42/79 (53.16%), Postives = 54/79 (68.35%), Query Frame = 1 
Query:   13 GHRVQAETVESLRAVLKQFCGTKNYHNFTNNKKGGDSSCNRYITSFTTSDPWESDHMEWIRLTVTGQSFLLHQIRKMVS 249
            G+R+ AE +E +   L  + GTKNYHNFT+ KK  D S NRYI SF    P+E +  E++ LTV GQSF+LHQIRKM+ 
Sbjct:  196 GYRITAEKIEEINKALSNYKGTKNYHNFTSGKKFEDPSANRYIISFKCGKPFERNGREFVVLTVKGQSFVLHQIRKMIG 274
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BLAST of mRNA_H-paniculata_contig31178.8429.1 vs. uniprot
Match: A9V1F3_MONBE (Predicted protein n=1 Tax=Monosiga brevicollis TaxID=81824 RepID=A9V1F3_MONBE)

HSP 1 Score: 87.8 bits (216), Expect = 1.780e-18
Identity = 39/78 (50.00%), Postives = 52/78 (66.67%), Query Frame = 1 
Query:   16 HRVQAETVESLRAVLKQFCGTKNYHNFTNNKKGGDSSCNRYITSFTTSDPWESDHMEWIRLTVTGQSFLLHQIRKMVS 249
            +RV    +   R  LK++ GT  +HNFT  K   D SC RYIT FT S+P+E + +EW+R+ V GQSF+LHQIRKM+ 
Sbjct:  165 YRVDEPKLTWFRETLKRYIGTHKFHNFTAGKSASDDSCRRYITDFTVSEPFEREGIEWVRIQVKGQSFILHQIRKMIG 242
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BLAST of mRNA_H-paniculata_contig31178.8429.1 vs. uniprot
Match: A0A5D6Y6U1_9STRA (PseudoU_synth_1 domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y6U1_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 2.240e-18
Identity = 44/78 (56.41%), Postives = 54/78 (69.23%), Query Frame = 1 
Query:   19 RVQAETVESLRAVLKQFCGTKNYHNFTNNKKGGDSSCNRYITSFTTSDP-WESDHMEWIRLTVTGQSFLLHQIRKMVS 249
            R+   T   L AVL+QF GT N+HNFT+  +     CNRYITSF  +DP + ++HMEWIRL V GQSFLLH IRKM+ 
Sbjct:  225 RLDEATRAQLNAVLRQFEGTHNFHNFTSKLEPTSPKCNRYITSFAAADPPFVANHMEWIRLRVVGQSFLLHHIRKMIG 302
[Close]
BLAST of mRNA_H-paniculata_contig31178.8429.1 vs. uniprot
Match: UPI00138FA692 (tRNA pseudouridine synthase A isoform X1 n=1 Tax=Nematostella vectensis TaxID=45351 RepID=UPI00138FA692)

HSP 1 Score: 87.8 bits (216), Expect = 2.260e-18
Identity = 42/79 (53.16%), Postives = 54/79 (68.35%), Query Frame = 1 
Query:   13 GHRVQAETVESLRAVLKQFCGTKNYHNFTNNKKGGDSSCNRYITSFTTSDPWESDHMEWIRLTVTGQSFLLHQIRKMVS 249
            G+R+ AE +E +   L  + GTKNYHNFT+ KK  D S NRYI SF    P+E +  E++ LTV GQSF+LHQIRKM+ 
Sbjct:  196 GYRITAEKIEEINKALSNYKGTKNYHNFTSGKKFEDPSANRYIISFKCGKPFERNGREFVVLTVKGQSFVLHQIRKMIG 274
[Close]
BLAST of mRNA_H-paniculata_contig31178.8429.1 vs. uniprot
Match: A0A226DGJ6_FOLCA (tRNA pseudouridine synthase A, mitochondrial n=1 Tax=Folsomia candida TaxID=158441 RepID=A0A226DGJ6_FOLCA)

HSP 1 Score: 87.8 bits (216), Expect = 2.450e-18
Identity = 40/78 (51.28%), Postives = 57/78 (73.08%), Query Frame = 1 
Query:   16 HRVQAETVESLRAVLKQFCGTKNYHNFTNNKKGGDSSCNRYITSFTTSDPWESDHMEWIRLTVTGQSFLLHQIRKMVS 249
            +R+  + + SLRA+L+ + GTKN+HNFT+ +K  D S  RYI SFT S+P+  D +E++ L V GQSF+LHQIRKM+ 
Sbjct:  265 YRINEQVLTSLRAILESYVGTKNFHNFTSRRKPTDPSSKRYIISFTASEPFMKDGLEYLILRVKGQSFMLHQIRKMIG 342
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig31178.8429.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LBC7_ECTSI1.160e-2763.86tRNA Pseudouridine Synthase n=2 Tax=Ectocarpus Tax... [more]
F4NY14_BATDJ6.490e-1948.28PseudoU_synth_1 domain-containing protein n=2 Tax=... [more]
A0A1S8W0L9_9FUNG7.760e-1950.62tRNA pseudouridine(38-40) synthase n=1 Tax=Batrach... [more]
UPI000F6866D71.260e-1847.13tRNA pseudouridine synthase A-like n=5 Tax=Penaeus... [more]
T1ELF5_HELRO1.440e-1848.75PseudoU_synth_1 domain-containing protein n=1 Tax=... [more]
UPI0013901B241.440e-1853.16tRNA pseudouridine synthase A isoform X2 n=1 Tax=N... [more]
A9V1F3_MONBE1.780e-1850.00Predicted protein n=1 Tax=Monosiga brevicollis Tax... [more]
A0A5D6Y6U1_9STRA2.240e-1856.41PseudoU_synth_1 domain-containing protein n=1 Tax=... [more]
UPI00138FA6922.260e-1853.16tRNA pseudouridine synthase A isoform X1 n=1 Tax=N... [more]
A0A226DGJ6_FOLCA2.450e-1851.28tRNA pseudouridine synthase A, mitochondrial n=1 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig31178contigH-paniculata_contig31178:384..1403 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score90.1
Seed ortholog evalue5.4e-16
Seed eggNOG ortholog109871.XP_006677575.1
Preferred namePUS1
KEGG koko:K06173,ko:K15452
Hectar predicted targeting categoryother localisation
GOsGO:0001522,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009982,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0016073,GO:0016556,GO:0016853,GO:0016866,GO:0031119,GO:0031120,GO:0034470,GO:0034641,GO:0034660,GO:0040031,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0097159,GO:0106032,GO:0140098,GO:1901360,GO:1901363,GO:1990481
EggNOG free text desc.Trna pseudouridine synthase
EggNOG OGs38F38@33154,3NVYM@4751,COG0101@1,KOG2553@2759
Ec32 ortholog descriptiontRNA Pseudouridine Synthase
Ec32 orthologEc-27_004410.1
EC5.4.99.12,5.4.99.44
COG Functional cat.J
BiGG ReactioniMM904.YGL063W,iND750.YGL063W
Best tax levelFungi
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03016
Exons2
Model size264
Cds size258
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig31178.8429.1prot_H-paniculata_contig31178.8429.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig31178 390..1403 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929959.419207-UTR-H-paniculata_contig31178:383..3891622929959.419207-UTR-H-paniculata_contig31178:383..389Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig31178 384..389 +
1691481086.8508112-UTR-H-paniculata_contig31178:383..3891691481086.8508112-UTR-H-paniculata_contig31178:383..389Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig31178 384..389 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929959.4356997-CDS-H-paniculata_contig31178:389..5171622929959.4356997-CDS-H-paniculata_contig31178:389..517Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31178 390..517 +
1691481086.863952-CDS-H-paniculata_contig31178:389..5171691481086.863952-CDS-H-paniculata_contig31178:389..517Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31178 390..517 +
1622929959.4544663-CDS-H-paniculata_contig31178:1273..14031622929959.4544663-CDS-H-paniculata_contig31178:1273..1403Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31178 1274..1403 +
1691481086.8838127-CDS-H-paniculata_contig31178:1273..14031691481086.8838127-CDS-H-paniculata_contig31178:1273..1403Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31178 1274..1403 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig31178.8429.1

>prot_H-paniculata_contig31178.8429.1 ID=prot_H-paniculata_contig31178.8429.1|Name=mRNA_H-paniculata_contig31178.8429.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=86bp
MKGHRVQAETVESLRAVLKQFCGTKNYHNFTNNKKGGDSSCNRYITSFTT
SDPWESDHMEWIRLTVTGQSFLLHQIRKMVSCRGM*
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mRNA from alignment at H-paniculata_contig31178:384..1403+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig31178.8429.1 ID=mRNA_H-paniculata_contig31178.8429.1|Name=mRNA_H-paniculata_contig31178.8429.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1020bp|location=Sequence derived from alignment at H-paniculata_contig31178:384..1403+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGAGAATGAAAGGGCACAGAGTGCAGGCTGAAACTGTCGAGTCTCTGCG
GGCTGTGTTGAAGCAGTTCTGCGGGACCAAAAACTACCACAATTTTACCA
ATAACAAGAAGGGAGGTGACAGCAGCTGCAACAGGTGAACACCCGTAATG
AATGCCGAATTCAACGATGATTGCTTATTTCGTGTTTTCGACGTTTTTTG
TTTTTTTTGCTGTTTTTTCATGTTCTACGTGTACAAGCAAGTACTTGCTT
TTTCTTCCTTCCTTTCTTTCATTTGTTTGTGTATATATATATATATGTGT
CTTTTTCGTGTCGCCATGTTATCCTCTCTTGGCTTGAGCGCGGGGGATTA
TTGGGCCGCACGAAATAGCGCAAGCCTATATAGGCCTGTGCCAATGCCTA
TCGTTGACGTGCTGTAGTAGGTTTCAATTATCGAGCTTGTCCGTGAGCGC
AAGAAATTTCGTCTATGTATACATTTTTTTCCTGTTAAATTTGGGTTTTC
GATCGTGGCCTTTCGCGCTTATCCATGTACCGACTGGCTCTAGCAAGACG
TTCTTCCACTAAAAGCACTGCTGCTGCTGCTGCTGCGATCGACGAAGCGC
GTTTTCGAGGGGGCTGGTTGTACTTCGTTTTTCCTTTCGTTTTTCATGTC
GTGAAAAGTAGCCACATTATGCACCATAGTAAAAAAATTGAGGTGAAGTT
CCGCACAGTAGGATATACATATACATATACATATACATATACATATACAT
ATATATTTTGGCGTGTGTATGTGACCGACAAACCGTATGACCCCACGGCA
ATCGGACTTATGGTCTGAAACCAATGGTGTTGTTCATGTCTTCCAACGTT
TGTCTGTCTATCCACACCGCGCTGCCGTCGTCGAAAATAGATACATCACT
TCCTTCACGACTTCTGACCCCTGGGAGAGCGATCACATGGAGTGGATTCG
CCTCACGGTCACGGGGCAAAGCTTCCTTTTGCACCAGATCCGAAAGATGG
TGAGTTGCAGAGGCATGTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig31178:384..1403+

>mRNA_H-paniculata_contig31178.8429.1 ID=mRNA_H-paniculata_contig31178.8429.1|Name=mRNA_H-paniculata_contig31178.8429.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=516bp|location=Sequence derived from alignment at H-paniculata_contig31178:384..1403+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAAGGGCACAGAGTGCAGGCTGAAACTGTCGAGTCTCTGCGGGCTGT
GTTGAAGCAGTTCTGCGGGACCAAAAACTACCACAATTTTACCAATAACA
AGAAGGGAGGTGACAGCAGCTGCAACAGATGAAAGGGCACAGAGTGCAGG
CTGAAACTGTCGAGTCTCTGCGGGCTGTGTTGAAGCAGTTCTGCGGGACC
AAAAACTACCACAATTTTACCAATAACAAGAAGGGAGGTGACAGCAGCTG
CAACAGATACATCACTTCCTTCACGACTTCTGACCCCTGGGAGAGCGATC
ACATGGAGTGGATTCGCCTCACGGTCACGGGGCAAAGCTTCCTTTTGCAC
CAGATCCGAAAGATGGTGAGTTGCAGAGGCATGTAGATACATCACTTCCT
TCACGACTTCTGACCCCTGGGAGAGCGATCACATGGAGTGGATTCGCCTC
ACGGTCACGGGGCAAAGCTTCCTTTTGCACCAGATCCGAAAGATGGTGAG
TTGCAGAGGCATGTAG
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