mRNA_H-paniculata_contig31062.8402.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig31062.8402.1
Unique NamemRNA_H-paniculata_contig31062.8402.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig31062.8402.1 vs. uniprot
Match: D8LC71_ECTSI (Protein CASP n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC71_ECTSI)

HSP 1 Score: 147 bits (370), Expect = 1.290e-38
Identity = 89/126 (70.63%), Postives = 98/126 (77.78%), Query Frame = 1 
Query:    1 SGKTMLRAFQSGPVAKQFGKLMDRRKNLEGNSSNAHADDFR--DDDLLDPTEEQ---EAGANPEGFSPADRLLAAVKRQRERFRKEALRREREASIAKGNAEQLTRDNQELRRENMHLYKKIRCAM 363
            +GKTMLRAFQSGPVAKQFGKL+ RR ++ G      ADD    +DDLL+  EE    E     EGFS ADRLL AVKRQRERFRKEALRREREASIAKGNAEQLTRDNQ+LRRENMHLYK++R  M
Sbjct:  530 AGKTMLRAFQSGPVAKQFGKLIGRRGDVGGG-----ADDVGPLEDDLLEGVEEAGGVEGVPGAEGFSAADRLLGAVKRQRERFRKEALRREREASIAKGNAEQLTRDNQDLRRENMHLYKRMRFVM 650
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BLAST of mRNA_H-paniculata_contig31062.8402.1 vs. uniprot
Match: A0A836CBY3_9STRA (Protein CASP n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBY3_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 1.280e-10
Identity = 51/127 (40.16%), Postives = 74/127 (58.27%), Query Frame = 1 
Query:    1 SGKTMLRAFQ---------SGPVAKQFGKLMDRRKNLEGNSSNAHADDFRDDDLLDPTEEQEAGANPEGFSPADRLLAAVKRQRERFRKEALRREREASIAKGNAEQLTRDNQELRRENMHLYKKIR 354
            +G+ MLR+ Q         SG +    G L  RR      S+   A+D     L D  E ++A    EG SPADR+LAAV+RQR RFRK+AL +E E ++ +   EQL + NQE++R+N+ LY+++R
Sbjct:  599 AGRIMLRSHQARAGSTSGPSGGLGALLGGLARRRS-----SAQRGAEDDGGGALPDLEEGEDAIL--EGCSPADRMLAAVQRQRSRFRKQALAKEAELALQRSTIEQLQQQNQEVQRDNLALYRRLR 718
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig31062.8402.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LC71_ECTSI1.290e-3870.63Protein CASP n=1 Tax=Ectocarpus siliculosus TaxID=... [more]
A0A836CBY3_9STRA1.280e-1040.16Protein CASP n=1 Tax=Tribonema minus TaxID=303371 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig31062contigH-paniculata_contig31062:389..1928 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score142.5
Seed ortholog evalue1.2e-31
Seed eggNOG ortholog2880.D8LC71
KEGG koko:K09313
Hectar predicted targeting categoryother localisation
GOsGO:0000139,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0006810,GO:0008150,GO:0012505,GO:0016020,GO:0016192,GO:0031090,GO:0031984,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0048193,GO:0051179,GO:0051234,GO:0098588,GO:0098791
EggNOG free text desc.intra-Golgi vesicle-mediated transport
EggNOG OGsKOG0963@1,KOG0963@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03000
Exons2
Model size363
Cds size351
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig31062.8402.1prot_H-paniculata_contig31062.8402.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig31062 401..1928 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929955.608554-UTR-H-paniculata_contig31062:388..4001622929955.608554-UTR-H-paniculata_contig31062:388..400Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig31062 389..400 +
1691481085.5004005-UTR-H-paniculata_contig31062:388..4001691481085.5004005-UTR-H-paniculata_contig31062:388..400Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig31062 389..400 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929955.6281705-CDS-H-paniculata_contig31062:400..5981622929955.6281705-CDS-H-paniculata_contig31062:400..598Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31062 401..598 +
1691481085.5122833-CDS-H-paniculata_contig31062:400..5981691481085.5122833-CDS-H-paniculata_contig31062:400..598Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31062 401..598 +
1622929955.647195-CDS-H-paniculata_contig31062:1775..19281622929955.647195-CDS-H-paniculata_contig31062:1775..1928Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31062 1776..1928 +
1691481085.5218723-CDS-H-paniculata_contig31062:1775..19281691481085.5218723-CDS-H-paniculata_contig31062:1775..1928Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31062 1776..1928 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig31062.8402.1

>prot_H-paniculata_contig31062.8402.1 ID=prot_H-paniculata_contig31062.8402.1|Name=mRNA_H-paniculata_contig31062.8402.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=117bp
MLRAFQSGPVAKQFGKLMDRRKNLEGNSSNAHADDFRDDDLLDPTEEQEA
GANPEGFSPADRLLAAVKRQRERFRKEALRREREASIAKGNAEQLTRDNQ
ELRRENMHLYKKIRCAM
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mRNA from alignment at H-paniculata_contig31062:389..1928+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig31062.8402.1 ID=mRNA_H-paniculata_contig31062.8402.1|Name=mRNA_H-paniculata_contig31062.8402.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1540bp|location=Sequence derived from alignment at H-paniculata_contig31062:389..1928+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCAGGAAAAACAATGCTCCGCGCGTTCCAGAGCGGACCCGTCGCCAAGCA
GTTCGGCAAGCTCATGGATCGACGAAAGAACCTGGAAGGAAACTCGTCCA
ACGCACACGCTGACGACTTTCGGGACGACGATCTGTTGGACCCCACAGAA
GAGCAGGAGGCAGGGGCCAATCCAGAGGGATTCAGCCCCGCGGATAGGCT
GCTGGCGGCGGTGAGGGAAAATGACTTACGGTAAAACCTGGTAACACTAC
ACACTCATCCGCATACGGGTAGCAAGCGTACCTCACGGTTATCTAGTAAT
GATGCCTCGTTGAATTGGTGTTTTTTGGGGGGTTTTCTCCCATATTTTCT
CACGTTTCACCTTATTTTTTGCTCTAAAGCAATCTACCGTATTTATTATT
ACCACAACTGTAGTTAACTTGATTATTTTGGCCGCCATATGCTGTTTCCG
AACAGAAAATGAATGTGATAGCGAGTGTCGAGGGAGTGAGCGCTACAGCC
CCTGCGCTCAGAACCATGGCCACGGCCCGTCCCTCTCTGTCTGTGCTTGA
CGTACTGACTGTCTCTAGTTTGTAATAAATTGCCTTTCTGAACAACAGCA
GCTCCCTCTTCCAGTAGTCCAGTAGTATATAGTTATGTCCTAGGTGTCGT
TGATTCCTGGCTTTGCCTGTGGGGATTAATTATAGTAGGCAGAGACCGGC
GTTGCCCAACCGGTTGAAGGGGAGATTGATTTCTCCGCCGTTTGATTCCG
TAGTTCCCCGTGAAGCAGATGCTTGTGTCGTCGGTGTGCCCGGTGGTTCA
ACATAGATAGATGACTGCGATCTGACAGAGTGAGCTGTCTAACCACCACC
ATGTTGTAGGATTAGAAGAACTTAAAAAAAAAAGAGCCCATCAAGCAGCC
ACGTATCTTTCAGTTTTGACGCCATAGACTCTACTCCCTCTACCCCCACC
ACGTTTTCGGGCTTGAAGGGTTTTTACCTTTGTTTTGACTGTGTTGTGAA
GTATGTTGTTTTAACCAGCGCAGTCTCCTCGATCGCCCAGATTACCCACA
TAATCTGATGTGGATCGATCAGACCCGCTGTCAGTCGTTGCGGAAATGGA
GAATAGTGGAGTAAACATATATTTTTATTACAGGGCTCATTTCGATGGAT
ACACAGGAGAATATATGCGGTACGGGAGTTTTAGTGGCTACGCATGTCTG
AAAGCGAGGATATGGTCGTTTTGACCCCCCGTTTTGACTCCCCCCTCTTC
CTGGTTCCGGGACCTAAACGGGTTTAGGATCTATGCATGGTGTCGAAACT
GAGAGATGCGGCGTTGGTCTTTCGCAAATTTTAAATGTGTATTAATTAAA
TACAACAAATAATCGCGACACTTGAAATGAGATGCAGGTGAAACGGCAGC
GAGAACGGTTTCGTAAGGAGGCGTTACGGCGGGAACGGGAAGCGTCTATT
GCCAAAGGGAATGCGGAGCAACTGACCAGGGACAACCAGGAGCTGAGGCG
AGAGAATATGCACCTCTACAAGAAAATTAGGTGCGCAATG
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Coding sequence (CDS) from alignment at H-paniculata_contig31062:389..1928+

>mRNA_H-paniculata_contig31062.8402.1 ID=mRNA_H-paniculata_contig31062.8402.1|Name=mRNA_H-paniculata_contig31062.8402.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=702bp|location=Sequence derived from alignment at H-paniculata_contig31062:389..1928+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTCCGCGCGTTCCAGAGCGGACCCGTCGCCAAGCAGTTCGGCAAGCT
CATGGATCGACGAAAGAACCTGGAAGGAAACTCGTCCAACGCACACGCTG
ACGACTTTCGGGACGACGATCTGTTGGACCCCACAGAAGAGCAGGAGGCA
GGGGCCAATCCAGAGGGATTCAGCCCCGCGGATAGGCTGCTGGCGGCGAT
GCTCCGCGCGTTCCAGAGCGGACCCGTCGCCAAGCAGTTCGGCAAGCTCA
TGGATCGACGAAAGAACCTGGAAGGAAACTCGTCCAACGCACACGCTGAC
GACTTTCGGGACGACGATCTGTTGGACCCCACAGAAGAGCAGGAGGCAGG
GGCCAATCCAGAGGGATTCAGCCCCGCGGATAGGCTGCTGGCGGCGGTGA
AACGGCAGCGAGAACGGTTTCGTAAGGAGGCGTTACGGCGGGAACGGGAA
GCGTCTATTGCCAAAGGGAATGCGGAGCAACTGACCAGGGACAACCAGGA
GCTGAGGCGAGAGAATATGCACCTCTACAAGAAAATTAGGTGCGCAATGG
TGAAACGGCAGCGAGAACGGTTTCGTAAGGAGGCGTTACGGCGGGAACGG
GAAGCGTCTATTGCCAAAGGGAATGCGGAGCAACTGACCAGGGACAACCA
GGAGCTGAGGCGAGAGAATATGCACCTCTACAAGAAAATTAGGTGCGCAA
TG
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