mRNA_H-paniculata_contig31040.8397.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig31040.8397.1
Unique NamemRNA_H-paniculata_contig31040.8397.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig31040.8397.1 vs. uniprot
Match: D7G753_ECTSI (Tetratricopeptide domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G753_ECTSI)

HSP 1 Score: 131 bits (330), Expect = 6.970e-34
Identity = 68/124 (54.84%), Postives = 90/124 (72.58%), Query Frame = 1 
Query:   13 SISAIESKFRKAASDHPDDVFSLAALAQLLADLGRQDEAARYFEKAIQ--HGSEKYILTDRSFCCEEALALAMGWYAALVEGNGTEGSVKAEALYKRVLALNPQDCLSMGNYAMFLHRIKKDYK 378
            ++ ++ES FR A +   +DVF+L ALA LLADLGR DEA  +FEKA++  H + K+          E   LAMGWYAALVEGNG+EG+VKAE LYKR L +N +D L+MGNYA+FLH+IK+D++
Sbjct:   14 AVDSVESSFRAAVAKQ-EDVFTLTALAHLLADLGRNDEAGSFFEKALKCPHHATKHGSPSSD---GETRGLAMGWYAALVEGNGSEGAVKAEGLYKRALRINDRDALAMGNYAVFLHKIKRDHR 133
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BLAST of mRNA_H-paniculata_contig31040.8397.1 vs. uniprot
Match: A0A835YUW1_9STRA (Tetratricopeptide domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUW1_9STRA)

HSP 1 Score: 106 bits (265), Expect = 1.080e-24
Identity = 60/121 (49.59%), Postives = 76/121 (62.81%), Query Frame = 1 
Query:   10 PSISAIESKFRKAASDHPDDVFSLAALAQLLADLGRQDEAARYFEKAIQHGSEKYILTDRSFCCEEALALAMGWYAALVEGNGTEGSVKAEALYKRVLALNPQDCLSMGNYAMFLHRIKKD 372
            P+I+ + + F  A     +DVFSL+A AQ+L   G  D A  +F+KAI  G       D     EE L L +GWYA LVEG G  G+ +AEALY+R L L P+D LSMGNYA+FLHRIK+D
Sbjct:   25 PTIAELRAPF-DARLQQQEDVFSLSAYAQVLLATGDIDGAECHFKKAIDAGE------DAGPEAEETLCLTLGWYAGLVEGRGKTGAAQAEALYRRALRLRPRDPLSMGNYAVFLHRIKRD 138
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig31040.8397.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G753_ECTSI6.970e-3454.84Tetratricopeptide domain-containing protein n=1 Ta... [more]
A0A835YUW1_9STRA1.080e-2449.59Tetratricopeptide domain-containing protein n=1 Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig31040contigH-paniculata_contig31040:280..666 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score131.3
Seed ortholog evalue3.2e-28
Seed eggNOG ortholog2880.D7G753
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein N-acetylglucosaminyltransferase activity
EggNOG OGsCOG3914@1,KOG4626@2759
Ec32 ortholog descriptionTetratricopeptide-like helical domain
Ec32 orthologEc-01_011010.1
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size387
Cds size387
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929954.7886612-CDS-H-paniculata_contig31040:279..6661622929954.7886612-CDS-H-paniculata_contig31040:279..666Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31040 280..666 +
1691481085.2337122-CDS-H-paniculata_contig31040:279..6661691481085.2337122-CDS-H-paniculata_contig31040:279..666Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31040 280..666 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig31040.8397.1prot_H-paniculata_contig31040.8397.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig31040 280..666 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig31040.8397.1

>prot_H-paniculata_contig31040.8397.1 ID=prot_H-paniculata_contig31040.8397.1|Name=mRNA_H-paniculata_contig31040.8397.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=129bp
MYPPSISAIESKFRKAASDHPDDVFSLAALAQLLADLGRQDEAARYFEKA
IQHGSEKYILTDRSFCCEEALALAMGWYAALVEGNGTEGSVKAEALYKRV
LALNPQDCLSMGNYAMFLHRIKKDYKVRV
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mRNA from alignment at H-paniculata_contig31040:280..666+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig31040.8397.1 ID=mRNA_H-paniculata_contig31040.8397.1|Name=mRNA_H-paniculata_contig31040.8397.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=387bp|location=Sequence derived from alignment at H-paniculata_contig31040:280..666+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTATCCACCATCAATCAGCGCGATAGAGTCCAAGTTTCGAAAGGCTGC
TTCTGATCACCCAGATGATGTGTTCTCTCTCGCGGCGCTGGCACAGCTGT
TGGCTGATCTTGGCCGACAAGACGAAGCGGCGCGATACTTCGAAAAGGCG
ATCCAGCACGGCTCAGAAAAATATATATTAACGGACAGATCTTTTTGTTG
CGAAGAGGCTCTAGCCTTGGCCATGGGGTGGTATGCGGCTCTTGTGGAGG
GCAACGGCACCGAAGGATCGGTGAAAGCAGAGGCGTTGTATAAGAGGGTG
TTGGCACTGAACCCGCAGGACTGCTTGTCTATGGGCAACTATGCGATGTT
TTTGCATCGGATAAAGAAGGACTACAAGGTAAGGGTT
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Coding sequence (CDS) from alignment at H-paniculata_contig31040:280..666+

>mRNA_H-paniculata_contig31040.8397.1 ID=mRNA_H-paniculata_contig31040.8397.1|Name=mRNA_H-paniculata_contig31040.8397.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=774bp|location=Sequence derived from alignment at H-paniculata_contig31040:280..666+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTATCCACCATCAATCAGCGCGATAGAGTCCAAGTTTCGAAAGGCTGC
TTCTGATCACCCAGATGATGTGTTCTCTCTCGCGGCGCTGGCACAGCTGT
TGGCTGATCTTGGCCGACAAGACGAAGCGGCGCGATACTTCGAAAAGGCG
ATCCAGCACGGCTCAGAAAAATATATATTAACGGACAGATCTTTTTGTTG
CGAAGAGGCTCTAGCCTTGGCCATGGGGTGGTATGCGGCTCTTGTGGAGG
GCAACGGCACCGAAGGATCGGTGAAAGCAGAGGCGTTGTATAAGAGGGTG
TTGGCACTGAACCCGCAGGACTGCTTGTCTATGGGCAACTATGCGATGTT
TTTGCATCGGATAAAGAAGGACTACAAGGTAAGGGTTATGTATCCACCAT
CAATCAGCGCGATAGAGTCCAAGTTTCGAAAGGCTGCTTCTGATCACCCA
GATGATGTGTTCTCTCTCGCGGCGCTGGCACAGCTGTTGGCTGATCTTGG
CCGACAAGACGAAGCGGCGCGATACTTCGAAAAGGCGATCCAGCACGGCT
CAGAAAAATATATATTAACGGACAGATCTTTTTGTTGCGAAGAGGCTCTA
GCCTTGGCCATGGGGTGGTATGCGGCTCTTGTGGAGGGCAACGGCACCGA
AGGATCGGTGAAAGCAGAGGCGTTGTATAAGAGGGTGTTGGCACTGAACC
CGCAGGACTGCTTGTCTATGGGCAACTATGCGATGTTTTTGCATCGGATA
AAGAAGGACTACAAGGTAAGGGTT
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