prot_H-paniculata_contig31025.8390.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig31025.8390.1
Unique Nameprot_H-paniculata_contig31025.8390.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length197
Homology
BLAST of mRNA_H-paniculata_contig31025.8390.1 vs. uniprot
Match: A0A151QNH5_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=5 Tax=Cajanus cajan TaxID=3821 RepID=A0A151QNH5_CAJCA)

HSP 1 Score: 142 bits (357), Expect = 1.540e-35
Identity = 80/178 (44.94%), Postives = 110/178 (61.80%), Query Frame = 0
Query:    1 MEEEWGASVKNGTWESEEPGRLPAGRKAIRTKWIFKRKPKEDGSVAHYKARLVAQGVSQVEGEDFFETSAPVARMSTIRTAFRLAAEKDFELEGVDVDAAYLNAPVEEELFVRLPPEFSPFSLDIPFVRRLCKSLYGLKQSGRNWKNTLDDFLVGLGLKRPLPTHARTFLTTKEERQI 178
            MEEE  +  KN TWE      LP  +KAI  KW+FK K K DGS+A +KARLVA+G  Q EG D+ E  APVAR+ T+R    LA+ ++++L  +DV +A+LN P++EE+FV  PP F     ++  V RL K+LYGLKQ+ R W   +D FL G G ++    H   ++ T  E +I
Sbjct:  845 MEEELKSIEKNDTWEMVN---LPQNKKAIAVKWVFKTKFKSDGSIAKHKARLVAKGFMQKEGIDYSEVFAPVARLETVRLIVALASWRNWKLWQLDVKSAFLNGPLDEEVFVTQPPGFICKGKELK-VLRLKKALYGLKQAPRAWNKRIDSFLTGFGFQKCSVEHG-VYIKTVSETEI 1017          
BLAST of mRNA_H-paniculata_contig31025.8390.1 vs. uniprot
Match: A0A4Z0ABW0_9AGAM (Uncharacterized protein (Fragment) n=1 Tax=Hericium alpestre TaxID=135208 RepID=A0A4Z0ABW0_9AGAM)

HSP 1 Score: 139 bits (350), Expect = 1.320e-34
Identity = 79/161 (49.07%), Postives = 101/161 (62.73%), Query Frame = 0
Query:    1 MEEEWGASVKNGTWESEEPGRLPAGRKAIRTKWIFKRKPKEDGSVAHYKARLVAQGVSQVEGEDFFETSAPVARMSTIRTAFRLAAEKDFELEGVDVDAAYLNAPVEEELFVRLPPEF-SPFSLDIPFVRRLCKSLYGLKQSGRNWKNTLDDFLVGLGLKR 160
            M+EE+   +K GTWE     RLPAG KAI ++W +K K   DG+   Y+ARLVAQG SQ  G DF ET +PVAR  + R  F L A   +  E VDV +AYLN  ++EE+F+  P  F SP  +D+  V RL KS+YGLKQSGR W   LD  L+ +G K+
Sbjct: 1013 MQEEYDVLLKTGTWEKV---RLPAGCKAIGSRWTYKVKHDADGNPVRYRARLVAQGFSQRPGVDFNETHSPVARFESFRLVFALVARFGWLFEQVDVKSAYLNGTLDEEIFMHQPEGFISPDEIDL--VLRLLKSIYGLKQSGRVWNKVLDGELLNIGFKQ 1168          
BLAST of mRNA_H-paniculata_contig31025.8390.1 vs. uniprot
Match: A0A2I0I0U1_PUNGR (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Punica granatum TaxID=22663 RepID=A0A2I0I0U1_PUNGR)

HSP 1 Score: 130 bits (326), Expect = 4.830e-34
Identity = 78/175 (44.57%), Postives = 110/175 (62.86%), Query Frame = 0
Query:    1 MEEEWGASVKNGTWESEEPGRLPAGRKAIRTKWIFKRKPKEDGSVAHYKARLVAQGVSQVEGEDFFETSAPVARMSTIRTAFRLAAEKDFELEGVDVDAAYLNAPVEEELFVRLPPEFSPFSLDIPFVRRLCKSLYGLKQSGRNWKNTLDDFLVGLGLKRPLPTHARTFLTTKEE 175
            M +E  A   NGTW  E    LP G++ I  KW++K K + DGSV  YKARLVA+G +QVEG DF ET APVA++ T+R    +A  K +E+  +DV+ A+L+  ++EE+++RLPP +S     +  V RL KSLYGL+Q+ RNW++      VG+G +   PTH    L+  EE
Sbjct:    1 MAKEIAALESNGTWTIEY---LPPGKRPIDCKWVYKIKRRADGSVERYKARLVAKGFTQVEGVDFNETFAPVAKLVTVRCLLAVAVAKGWEIHQMDVNNAFLHGDLDEEVYMRLPPGYSSQRSGV--VCRLRKSLYGLRQASRNWQS------VGIGDQFG-PTHG---LSVGEE 160          
BLAST of mRNA_H-paniculata_contig31025.8390.1 vs. uniprot
Match: A0A284QR88_ARMOS (Uncharacterized protein n=2 Tax=Armillaria TaxID=47424 RepID=A0A284QR88_ARMOS)

HSP 1 Score: 137 bits (344), Expect = 8.580e-34
Identity = 75/166 (45.18%), Postives = 100/166 (60.24%), Query Frame = 0
Query:    1 MEEEWGASVKNGTWESEEPGRLPAGRKAIRTKWIFKRKPKEDGSVAHYKARLVAQGVSQVEGEDFFETSAPVARMSTIRTAFRLAAEKDFELEGVDVDAAYLNAPVEEELFVRLPPEFSPFSLDIPFVRRLCKSLYGLKQSGRNWKNTLDDFLVGLGLKRPLPTHA 166
            M+EE     + GT+  E+   LPAGR  I  KW+F +K  EDG+++ YKARLVAQG SQ+ G D+ ET APV R+ ++R A  +AA KD E+  +DV  AYLN  +EEE+++R P  +   S     V RL K+LYGLKQSGR W    D  L  +G  +    H 
Sbjct:  898 MDEEMSVIKEMGTYTKED---LPAGRDTIGCKWVFLKKYDEDGNISRYKARLVAQGYSQIPGVDYTETFAPVVRLESVRAALGIAAIKDLEISQMDVKGAYLNGELEEEIYMRQPEGYDDGS---GRVCRLRKTLYGLKQSGREWNREFDRKLTSIGFSKLEADHC 1057          
BLAST of mRNA_H-paniculata_contig31025.8390.1 vs. uniprot
Match: A0A8H8DM44_9FUNG (Reverse transcriptase (RNA-dependent DNA polymerase)-domain-containing protein n=1 Tax=Olpidium bornovanus TaxID=278681 RepID=A0A8H8DM44_9FUNG)

HSP 1 Score: 130 bits (328), Expect = 1.120e-33
Identity = 73/148 (49.32%), Postives = 96/148 (64.86%), Query Frame = 0
Query:   10 KNGTWESEEPGRLPAGRKAIRTKWIFKRKPKEDGSVAHYKARLVAQGVSQVEGEDFFETSAPVARMSTIRTAFRLAAEKDFELEGVDVDAAYLNAPVEEELFVRLPPEFSPFSLDIPFVRRLCKSLYGLKQSGRNWKNTLDDFLVGLG 157
            K+GTW+++    LP GR A+ TKWIFK +   DG++  YKARLVA+G +QV G DF ET APV R++T+R    LA  K + +  VDV+AAYLN+ +EEE++  +P   S    D   V RL + LYGLKQ+GR W   L   LVGLG
Sbjct:   11 KHGTWDADVVA-LPPGRTAVDTKWIFKAQRNADGTLKKYKARLVARGFTQVHGVDFHETYAPVMRLATLRICRALAVRKRWAIADVDVEAAYLNSDLEEEVYSDIPEGLS-IKGDKTGVLRLRRPLYGLKQAGRAWGTKLRAALVGLG 156          
BLAST of mRNA_H-paniculata_contig31025.8390.1 vs. uniprot
Match: A0A2I0K762_PUNGR (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Punica granatum TaxID=22663 RepID=A0A2I0K762_PUNGR)

HSP 1 Score: 125 bits (315), Expect = 1.560e-33
Identity = 70/145 (48.28%), Postives = 94/145 (64.83%), Query Frame = 0
Query:    1 MEEEWGASVKNGTWESEEPGRLPAGRKAIRTKWIFKRKPKEDGSVAHYKARLVAQGVSQVEGEDFFETSAPVARMSTIRTAFRLAAEKDFELEGVDVDAAYLNAPVEEELFVRLPPEFSPFSLDIPFVRRLCKSLYGLKQSGRNW 145
            M EE  A   N TW  E    LP G++ I  KW+FK K + DGSV  YKARLVA+G +Q+EG DF ET APVA++ T+R    +A  K +E+  +DV  A+L+  ++EE++++LPP FS  S     V RL KSLYGL+Q+ RNW
Sbjct:    1 MAEEIQAMETNQTWTLET---LPPGKQFIDCKWVFKIKRRADGSVERYKARLVAKGFTQIEGIDFHETFAPVAKLVTVRCLLTVAVAKGWEMHHMDVQNAFLHGNLDEEVYMKLPPGFS--SCREGLVCRLRKSLYGLRQASRNW 140          
BLAST of mRNA_H-paniculata_contig31025.8390.1 vs. uniprot
Match: A0A392MGQ0_9FABA (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Trifolium medium TaxID=97028 RepID=A0A392MGQ0_9FABA)

HSP 1 Score: 133 bits (335), Expect = 2.700e-33
Identity = 73/166 (43.98%), Postives = 103/166 (62.05%), Query Frame = 0
Query:    1 MEEEWGASVKNGTWESEEPGRLPAGRKAIRTKWIFKRKPKEDGSVAHYKARLVAQGVSQVEGEDFFETSAPVARMSTIRTAFRLAAEKDFELEGVDVDAAYLNAPVEEELFVRLPPEFSPFSLDIPFVRRLCKSLYGLKQSGRNWKNTLDDFLVGLGLKRPLPTHA 166
            M +E  A  +N TWE     RLP G+KA+  +W++K K K  G V  YKARLVA+G +QVEG+DF ET APVA+M+T+R    +A  K +EL  +DV  A+L+  ++EE+++ +PP +     D   V RL KSLYGL+Q+ RNW + L   LV  G +     H+
Sbjct:  207 MSQELKALEENKTWEM---SRLPKGKKAVGCRWVYKVKYKSTGEVEKYKARLVAKGYTQVEGDDFNETFAPVAKMTTVRCLLTVAVAKGWELHQMDVSNAFLHGELDEEVYMEVPPGYKV--PDKEMVCRLRKSLYGLRQASRNWYSKLSQALVKYGFQECEADHS 367          
BLAST of mRNA_H-paniculata_contig31025.8390.1 vs. uniprot
Match: A0A392NJT6_9FABA (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Trifolium medium TaxID=97028 RepID=A0A392NJT6_9FABA)

HSP 1 Score: 129 bits (323), Expect = 3.680e-33
Identity = 73/173 (42.20%), Postives = 105/173 (60.69%), Query Frame = 0
Query:    7 ASVKNGTWESEEPGRLPAGRKAIRTKWIFKRKPKEDGSVAHYKARLVAQGVSQVEGEDFFETSAPVARMSTIRTAFRLAAEKDFELEGVDVDAAYLNAPVEEELFVRLPPEFSPFSLDIP---FVRRLCKSLYGLKQSGRNWKNTLDDFLVGLGLKRPLPTHARTFLTTKEER 176
            A  +NGTW+   P   P G+K +  +W++K K K  G +  YKARLVA+G +QVEGEDF ET APVA+M+T+R    +A  K +EL  +DV  A+L+  +EEE+++++P  +     D P    V RL KSLYGLKQ+ RNW + L   L+  G +     H+  F  +KE +
Sbjct:   63 ALEENGTWDLTLP---PPGKKIVGCRWVYKVKYKASGEIEKYKARLVAKGYTQVEGEDFNETFAPVAKMTTVRCLLTVAVAKGWELHQMDVSNAFLHGDLEEEVYMQVPNGY-----DTPKAGMVCRLRKSLYGLKQASRNWYSKLSQALIEYGFQESHADHS-LFTYSKEGK 226          
BLAST of mRNA_H-paniculata_contig31025.8390.1 vs. uniprot
Match: A0A251UM92_HELAN (Putative reverse transcriptase, RNA-dependent DNA polymerase, Gag-polypeptide of LTR copia-type n=1 Tax=Helianthus annuus TaxID=4232 RepID=A0A251UM92_HELAN)

HSP 1 Score: 135 bits (339), Expect = 3.810e-33
Identity = 72/160 (45.00%), Postives = 104/160 (65.00%), Query Frame = 0
Query:    1 MEEEWGASVKNGTWESEEPGRLPAGRKAIRTKWIFKRKPKEDGSVAHYKARLVAQGVSQVEGEDFFETSAPVARMSTIRTAFRLAAEKDFELEGVDVDAAYLNAPVEEELFVRLPPEFSPFSLDIPFVRRLCKSLYGLKQSGRNWKNTLDDFLVGLGLKR 160
            M++E  A  KNGTW  EE   LP G++   +KW++K K K DG V  YKARLVA+G +Q+EG D+ ET APVA++ T+RT   +A +KD+ +  +DV+ A+L+  ++EE+++++P  F         V RL KSLYGLKQ+ RNW   L  FL+ L  K+
Sbjct:  456 MQQEIKALEKNGTWTLEE---LPEGKRPTDSKWVYKTKFKSDGEVERYKARLVAKGFTQMEGVDYHETFAPVAKLVTVRTLLAVATKKDWIIHQLDVNNAFLHGDLDEEVYMKIPKGFEKEGETR--VCRLRKSLYGLKQASRNWYKRLTSFLLSLNFKQ 610          
BLAST of mRNA_H-paniculata_contig31025.8390.1 vs. uniprot
Match: A0A2K3K9W4_TRIPR (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3K9W4_TRIPR)

HSP 1 Score: 124 bits (312), Expect = 7.660e-33
Identity = 68/145 (46.90%), Postives = 97/145 (66.90%), Query Frame = 0
Query:    1 MEEEWGASVKNGTWESEEPGRLPAGRKAIRTKWIFKRKPKEDGSVAHYKARLVAQGVSQVEGEDFFETSAPVARMSTIRTAFRLAAEKDFELEGVDVDAAYLNAPVEEELFVRLPPEFSPFSLDIPFVRRLCKSLYGLKQSGRNW 145
            M+ E  A  +N TW S  P  LP G+K I  +W+FK K K DGS+  YKARLVA+G +Q+EG D+F+T APVA++ T+R    +AA K++ L  +DV+ A+L+  + E++F++LPP F      +  V +L KSLYGLKQ+ RNW
Sbjct:   18 MQSEIDALCENRTW-SLVP--LPDGKKPIGCRWVFKIKRKSDGSIERYKARLVAKGYTQIEGVDYFDTFAPVAKLVTVRVLLSIAAAKNWPLHQLDVNNAFLHGDLHEDVFMQLPPGFRRKGEQL--VCKLQKSLYGLKQASRNW 157          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig31025.8390.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A151QNH5_CAJCA1.540e-3544.94Retrovirus-related Pol polyprotein from transposon... [more]
A0A4Z0ABW0_9AGAM1.320e-3449.07Uncharacterized protein (Fragment) n=1 Tax=Hericiu... [more]
A0A2I0I0U1_PUNGR4.830e-3444.57Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A284QR88_ARMOS8.580e-3445.18Uncharacterized protein n=2 Tax=Armillaria TaxID=4... [more]
A0A8H8DM44_9FUNG1.120e-3349.32Reverse transcriptase (RNA-dependent DNA polymeras... [more]
A0A2I0K762_PUNGR1.560e-3348.28Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A392MGQ0_9FABA2.700e-3343.98Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A392NJT6_9FABA3.680e-3342.20Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A251UM92_HELAN3.810e-3345.00Putative reverse transcriptase, RNA-dependent DNA ... [more]
A0A2K3K9W4_TRIPR7.660e-3346.90Retrovirus-related Pol polyprotein from transposon... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 22..161
e-value: 4.2E-36
score: 124.8
NoneNo IPR availablePANTHERPTHR11439:SF273coord: 3..158
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 178..194
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 195..196
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..177
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 3..158

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig31025contigH-paniculata_contig31025:36..626 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig31025.8390.1mRNA_H-paniculata_contig31025.8390.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig31025 21..1563 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig31025.8390.1 ID=prot_H-paniculata_contig31025.8390.1|Name=mRNA_H-paniculata_contig31025.8390.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=197bp
MEEEWGASVKNGTWESEEPGRLPAGRKAIRTKWIFKRKPKEDGSVAHYKA
RLVAQGVSQVEGEDFFETSAPVARMSTIRTAFRLAAEKDFELEGVDVDAA
YLNAPVEEELFVRLPPEFSPFSLDIPFVRRLCKSLYGLKQSGRNWKNTLD
DFLVGLGLKRPLPTHARTFLTTKEERQIFWWPCMLTTWSLLVVVRK*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2
IPR039537Retrotran_Ty1/copia-like