mRNA_H-paniculata_contig31025.8390.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig31025.8390.1
Unique NamemRNA_H-paniculata_contig31025.8390.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig31025.8390.1 vs. uniprot
Match: A0A7D9M6E1_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9M6E1_PARCT)

HSP 1 Score: 211 bits (538), Expect = 2.930e-60
Identity = 117/311 (37.62%), Postives = 188/311 (60.45%), Query Frame = 3
Query:  486 TQTSITDSCPYFSHDEGGETNLLVAVYVDDLVIAGRR-EKVDEFKHNISQRFRMKDLGSLSRVLGIEVRDDRPNGTITISQGSYIREVLKRYGFDECQGVPTPVEGKVK-ISAPESA---NKPSESKSLGEQLYASTGTRPDIAYAVHPAACRMEDPCQEDFSTCNRIFRYLSTVPDLGITFGGKNNGHGLEGFVDADWAEDVEDRKSTTGYVFKLKGGAISWCSKKQQLVTWSSADAENLAAGKAGEETLYFRELLESIGFGCRGSTTLFEDHKSAINLSKGSGAHSRTKHTGVRWHGIRGVDSRKSIGI 1403
            TQT  +D C Y   ++G     +VA++VDD+++AG+  EK+ + K +I++RF++KD+G L  +LG++V  +  +G + I Q +Y   ++K+YG + C+ V TPV+   K +SA E +   NK     ++G  LY S+ TRPDI +AV+  A    +   E ++   RIFRYL    + G+ +  +N      GF DADWA D+ DRKST+GY F++ G A+SW SKKQ  V  S+A+AE +A   A +E L+ R+LL  +        T++ED++SAI +SK    H R+KH  +++H +R    +K++ +
Sbjct:   44 TQTE-SDPCIYVKEEDGDI--FVVAIHVDDIILAGKTDEKIAKVKESIAERFQVKDMGELKYILGLQVIQE--DGKVWIGQPTYTASIIKKYGMENCKPVETPVDLSSKLVSAMEDSELFNKEEYQSAVGSLLYLSSATRPDITFAVNNVAKFSANFTNEHWTAVKRIFRYLKKTVNYGLLY-SENANPDCVGFSDADWAGDLNDRKSTSGYTFQINGAAVSWRSKKQTCVALSTAEAEYVALSAAAQEALWMRQLLTDLNVNIDKPMTIYEDNQSAIAMSKNPQFHGRSKHIDIKYHFVRDQVEKKTLTV 348          
BLAST of mRNA_H-paniculata_contig31025.8390.1 vs. uniprot
Match: A0A7D9HZ03_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9HZ03_PARCT)

HSP 1 Score: 210 bits (535), Expect = 2.910e-57
Identity = 116/311 (37.30%), Postives = 187/311 (60.13%), Query Frame = 3
Query:  486 TQTSITDSCPYFSHDEGGETNLLVAVYVDDLVIAGRR-EKVDEFKHNISQRFRMKDLGSLSRVLGIEVRDDRPNGTITISQGSYIREVLKRYGFDECQGVPTPVEGKVK-ISAPESA---NKPSESKSLGEQLYASTGTRPDIAYAVHPAACRMEDPCQEDFSTCNRIFRYLSTVPDLGITFGGKNNGHGLEGFVDADWAEDVEDRKSTTGYVFKLKGGAISWCSKKQQLVTWSSADAENLAAGKAGEETLYFRELLESIGFGCRGSTTLFEDHKSAINLSKGSGAHSRTKHTGVRWHGIRGVDSRKSIGI 1403
            TQT  +D C Y   ++G     +VA++VDD+++AG+  EK+ + K +I++RF++KD+G L  +LG++V  +  +  + I Q +Y   ++K+YG + C+ V TPV+   K +SA E +   NK     ++G  LY S+ TRPDI +AV+  A    +P  E ++   RIFRYL    + G+ +  +N      GF DADWA D+ DRKST+GY F++ G A+SW SKKQ  V  S+A AE +A   A +E L+ R+LL  +        T++ED++SAI +SK    H R+KH  ++++ +R    +K++ +
Sbjct:  319 TQTE-SDPCIYVKEEDGNI--FVVAIHVDDIILAGKTDEKIAKVKESIAERFQVKDMGELKYILGLQVIQE--DAKVWIGQPTYTASIIKKYGMENCKPVETPVDLSSKLVSAMEDSELFNKEEHQSAVGSLLYLSSATRPDITFAVNNVAKFSANPTNEHWTAVKRIFRYLKGTVNYGLLY-SENANPDCVGFSDADWAGDLNDRKSTSGYTFQINGAAVSWRSKKQTCVALSTAAAEYVALSAAAQEALWMRQLLTDLNVNIDEPMTIYEDNQSAIAMSKNPQFHGRSKHIDIKYYFVRDQVEKKTLTV 623          
BLAST of mRNA_H-paniculata_contig31025.8390.1 vs. uniprot
Match: A0A0S7JP25_9TELE (POLX n=2 Tax=Poeciliopsis prolifica TaxID=188132 RepID=A0A0S7JP25_9TELE)

HSP 1 Score: 202 bits (515), Expect = 4.690e-57
Identity = 119/298 (39.93%), Postives = 168/298 (56.38%), Query Frame = 3
Query:  495 SITDSCPYFSHDEGGETNLLVAVYVDDLV-IAGRREKVDEFKHNISQRFRMKDLGSLSRVLGIEVRDDRPNGTITISQGSYIREVLKRYGFDECQGVPTPVEGKVKISAPESANKPSESKS----LGEQLYASTGTRPDIAYAVHPAACRMEDPCQEDFSTCNRIFRYLSTVPDLGITFGGKNNGHGLEGFVDADWAEDVEDRKSTTGYVFKLKGGAISWCSKKQQLVTWSSADAENLAAGKAGEETLYFRELLESIGFGCRGSTTLFEDHKSAINLSKGSGAHSRTKHTGVRWHGIR 1373
            S +D C +    +  E   ++AVYVDDL+ I    E +DE K  + +R++MKDLG LS +LGI V  D+    I + Q  YI  +LK+YG D+   V TP +  VK+   +  + P +  +    +G  LYA+  TRPDIA AV   +    +P     +   RI RYL    +L + F    N   L GF DADWA D++DR STTG +F L GGA+SW SKKQ  V  S+A+AE +A  +A +E  + R LL  +G   +  T + ED++ AI ++K    HSRTKH  +R+H IR
Sbjct:   33 SSSDPCVFVRLSQELE---IIAVYVDDLMLITESTESMDELKLTLQERYKMKDLGELSYILGISVIQDKEKNCICLHQKQYIETILKKYGMDKANPVATPADISVKLKKDDGVSNPVDPSTYQSMVGSLLYAAMTTRPDIAQAVSAVSKFNANPNTAHLTAVKRILRYLKGTVNLALKFDCAGN-KDLIGFSDADWAGDLDDRHSTTGNIFLLSGGAVSWLSKKQATVALSTAEAEYVALSQAAQEGTWLRRLLNDLGMVTK-PTVILEDNQGAIAIAKNPVDHSRTKHIDIRYHYIR 325          
BLAST of mRNA_H-paniculata_contig31025.8390.1 vs. uniprot
Match: A0A1X7STY0_AMPQE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7STY0_AMPQE)

HSP 1 Score: 201 bits (512), Expect = 1.550e-56
Identity = 118/306 (38.56%), Postives = 176/306 (57.52%), Query Frame = 3
Query:  504 DSCPYFSHDEGGETNLLVAVYVDDLVIAG-RREKVDEFKHNISQRFRMKDLGSLSRVLGIEVRDDRPNGTITISQGSYIREVLKRYGFDECQGVPTPVEGKVKIS-APESANKPSESK---SLGEQLYASTGTRPDIAYAVHPAACRMEDPCQEDFSTCNRIFRYLSTVPDLGITFGGKNNGHGLEGFVDADWAEDVEDRKSTTGYVFKLKGGAISWCSKKQQLVTWSSADAENLAAGKAGEETLYFRELLESIGFGCRGSTTLFEDHKSAINLSKGSGAHSRTKHTGVRWHGIRGVDSRKSIGIE 1406
            D C Y S D  G+  +++AVYVDD++IA    EK+ E K  I++RF +KD+G LS  LGI+V  D    TI I Q +YI  ++  +     +   TP+    K+S A E + +    K   ++G QLY ST TRPDIA+AV   A    DP  + +     I RYL+     G+ F  K     +EG+ DADWA D++DRKS  GY+FKL G +ISW S+KQ  V  S+A+AE ++   AG+E ++  +L+  +  G     TL+ED+++AI LSK    H R+KH  +++H IR    + ++ ++
Sbjct:   64 DPCLYVSTD--GDP-VIIAVYVDDILIAAVTDEKISEVKAAIAERFDVKDMGELSYFLGIKVVQDPTANTIWIGQPNYIESLISDFDMTNAKSCNTPINVGEKLSKATEESIRADPEKYQSAVGRQLYLSTTTRPDIAFAVSSVAKYTSDPTVQHWKAVKHIIRYLTGTVGYGLMFRKKKTAE-VEGYSDADWAGDIDDRKSILGYLFKLSGASISWRSRKQSCVALSTAEAEYISLATAGQEAIWLSQLINELKRGTEKPVTLYEDNQAAICLSKNPQFHGRSKHIAIKYHFIRDEIQKGTLTVQ 365          
BLAST of mRNA_H-paniculata_contig31025.8390.1 vs. uniprot
Match: A0A6S7HEL0_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 (Fragment) n=4 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7HEL0_PARCT)

HSP 1 Score: 213 bits (541), Expect = 2.570e-56
Identity = 117/311 (37.62%), Postives = 188/311 (60.45%), Query Frame = 3
Query:  486 TQTSITDSCPYFSHDEGGETNLLVAVYVDDLVIAGRR-EKVDEFKHNISQRFRMKDLGSLSRVLGIEVRDDRPNGTITISQGSYIREVLKRYGFDECQGVPTPVEGKVK-ISAPESA---NKPSESKSLGEQLYASTGTRPDIAYAVHPAACRMEDPCQEDFSTCNRIFRYLSTVPDLGITFGGKNNGHGLEGFVDADWAEDVEDRKSTTGYVFKLKGGAISWCSKKQQLVTWSSADAENLAAGKAGEETLYFRELLESIGFGCRGSTTLFEDHKSAINLSKGSGAHSRTKHTGVRWHGIRGVDSRKSIGI 1403
            TQT  +D C Y   ++G     +VA++VDD+++AG+  EK+ + K +I++RF++KD+G L  +LG++V  +  +  + I Q +Y   ++K+YG + C+ V TPV+   K +SA E +   NK     ++G  LY S+ TRPDI +AV+  A    +P  E ++   RIFRYL    + G+ +  +N      GF DADWA D+ DRKST+GY F++ G A+SW SKKQ  V  S+A+AE +A   A +E L+ R+LL  +        T++ED++SAI +SK    H R+KH  +++H +R    +K++ +
Sbjct:  933 TQTE-SDPCIYVKEEDGDI--FVVAIHVDDIILAGKTDEKIAKVKESIAERFQVKDMGELKYILGLQVIQE--DAKVWIGQPTYTASIIKKYGMENCKPVETPVDLSSKLVSAIEDSELFNKEEYQSAVGSLLYLSSATRPDITFAVNNVAKFSANPTNEHWTAVKRIFRYLKGTVNYGLLY-SENANPDCVGFSDADWAGDLNDRKSTSGYTFQINGAAVSWRSKKQTCVALSTAEAEYVALSAAAQEALWMRQLLTDLNVNIDEPMTIYEDNQSAIAMSKNPQFHGRSKHIDIKYHFVRDQVEKKTLTV 1237          
BLAST of mRNA_H-paniculata_contig31025.8390.1 vs. uniprot
Match: A0A7D9KES8_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9KES8_PARCT)

HSP 1 Score: 206 bits (525), Expect = 1.360e-55
Identity = 116/306 (37.91%), Postives = 184/306 (60.13%), Query Frame = 3
Query:  504 DSCPYFSHDEGGETNLLVAVYVDDLVIAGRRE-KVDEFKHNISQRFRMKDLGSLSRVLGIEVRDDRPNGTITISQGSYIREVLKRYGFDECQGVPTPVEG--KVKISAPES--ANKPSESKSLGEQLYASTGTRPDIAYAVHPAACRMEDPCQEDFSTCNRIFRYLSTVPDLGITFGGKNNGHGLEGFVDADWAEDVEDRKSTTGYVFKLKGGAISWCSKKQQLVTWSSADAENLAAGKAGEETLYFRELLESIGFGCRGSTTLFEDHKSAINLSKGSGAHSRTKHTGVRWHGIRGVDSRKSIGIE 1406
            D C Y   +EGGE   ++AVYVDD+++AG+ + K++E K  ++++F+MKD+G L   LG++V     +  I I Q +Y + VL+R+G +  +   TPV    K+K +A +S   ++ +   ++G  LY ST TRPDIAYAV   A    DP +E +    RI RYL+   D+G+ + G        G+ DADWA D++DRKST+GYVF++   AISW SKKQ  V  S+A+AE +A   A +E ++ ++LL  +     G   + ED+++AI ++K +  H R KH  +++H IR   +  ++ +E
Sbjct:  160 DPCIYVK-EEGGEI-FIIAVYVDDILLAGKNDQKINEVKQALAEQFQMKDMGQLHYFLGVKVIPKPDSKEIWIGQEAYTKSVLERFGMESSKPASTPVNPGTKLKKAADDSQRVDQVNYQCAVGHLLYLSTKTRPDIAYAVSDVARFSADPTEEHWIAVKRIMRYLNGTRDMGLLYDGSKTTTSCVGYSDADWAGDLDDRKSTSGYVFQISNAAISWRSKKQSCVALSTAEAEYMALASATQEAVWLQQLLSDLKSKPTGPMLILEDNQAAICMAKNAQYHGRAKHIDIKYHFIREHVASAAVKLE 463          
BLAST of mRNA_H-paniculata_contig31025.8390.1 vs. uniprot
Match: A0A7D9IUY0_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9IUY0_PARCT)

HSP 1 Score: 210 bits (535), Expect = 1.660e-55
Identity = 123/328 (37.50%), Postives = 185/328 (56.40%), Query Frame = 3
Query:  474 CWVRTQTSI----------TDSCPYFSHD--EGGETNLLV-AVYVDDLV-IAGRREKVDEFKHNISQRFRMKDLGSLSRVLGIEVRDDRPNGTITISQGSYIREVLKRYGFDECQGVPTPVEGKVKISAPESANKPSE----SKSLGEQLYASTGTRPDIAYAVHPAACRMEDPCQEDFSTCNRIFRYLSTVPDLGITFGGKNNGHGLEGFVDADWAEDVEDRKSTTGYVFKLKGGAISWCSKKQQLVTWSSADAENLAAGKAGEETLYFRELLESIGFGCRGSTTLFEDHKSAINLSKGSGAHSRTKHTGVRWHGIRGVDSRKSIGI 1403
            CW  T  S            DSC Y      + G+ N ++ +++VDD++  +     ++E K  I  +F+++DLG +S +LG+ ++ DR + T+TISQ  Y+  VLKR+  +EC+ V TP+E   +        +P+      K +G   Y +T TRPD+A AV   +  M  P QE +    RI RY+    + GITF  K+    L G+ DADWA D E R+ST+GY+F++ G  ISWCSKKQ  V+ SS +AE +A   A +E ++ R LLE+IG   + ST + ED+++AI LS+    H+RTKH  V +H +R     KSI +
Sbjct:  991 CWNSTLDSFLKSSGYKQVGADSCLYMKSVKLQNGKINFVILSIHVDDILWFSNDVIMLEEEKVAIGTKFKVEDLGEVSHILGMLIKRDRDSRTLTISQSKYLEGVLKRFNMEECKPVSTPLEPGKQFHELSDDERPANIHEYQKIIGCLTYVTTATRPDLAAAVGILSKYMTKPSQEHWKGVKRILRYIKGTLNFGITFQAKDQTCILTGYSDADWANDTETRRSTSGYIFQISGCTISWCSKKQSCVSRSSTEAEYMALSLATQEAIWLRRLLENIGVKQKESTVMCEDNQAAIQLSRNPKFHNRTKHIDVAFHFVREKVQDKSIDV 1318          
BLAST of mRNA_H-paniculata_contig31025.8390.1 vs. uniprot
Match: A0A0C9VSW1_SPHS4 (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Sphaerobolus stellatus (strain SS14) TaxID=990650 RepID=A0A0C9VSW1_SPHS4)

HSP 1 Score: 206 bits (525), Expect = 1.860e-55
Identity = 117/288 (40.62%), Postives = 166/288 (57.64%), Query Frame = 3
Query:  519 FSHDEGGETNLLVAVYVDDLVI-AGRREKVDEFKHNISQRFRMKDLGSLSRVLGIEVRDDRPNGTITISQGSYIREVLKRYGFDECQGVPTPVEGKVKISAPESANKPSE--SKSLGEQLYASTGTRPDIAYAVHPAACRMEDPCQEDFSTCNRIFRYLSTVPDLGITFGGKNNGHGLEGFVDADWAEDVEDRKSTTGYVFKLKGGAISWCSKKQQLVTWSSADAENLAAGKAGEETLYFRELLESIGFGCRGSTTLFEDHKSAINLSKGSGAHSRTKHTGVRWHGIR 1373
            F  D+ G   ++VAVYVDDL+I +   E V + K ++  +F M DLG    +LG+E+  DRP+ T++ISQ +Y  E+L+R+G  +C+  PTP+E  V +     A   S+    ++G  +Y   GT PD+A++V   +     P +E      R+ RY+    DLG+ F G  N   +E F+DADWA+D  +R S TGYV  L G  ISW SKKQ     SS +AE +AA  A +E L+ R  +  +GF     T L+ D++SAI L K S  HSRTKH  VR+H IR
Sbjct:  384 FIKDDNG-IRVVVAVYVDDLLIFSSSIEAVKKVKKDLKGKFEMTDLGEAHWILGMEITRDRPSHTLSISQKAYFAEILERFGMSDCKPAPTPMEVGVSLRKLSEAEVDSQHYQSAVGSLMYGMIGTHPDVAHSVGVLSQHCATPGEEHEKGNKRVLRYIKGTTDLGLVFIGSGNTK-IEVFIDADWAQDKNNRHSLTGYVCTLAGATISWSSKKQSSTAQSSTEAEYMAATHAAKEALWLRMFMRELGFEQDSPTPLYVDNQSAITLVKNSEFHSRTKHINVRYHFIR 669          
BLAST of mRNA_H-paniculata_contig31025.8390.1 vs. uniprot
Match: A0A1M2VV58_TRAPU (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Trametes pubescens TaxID=154538 RepID=A0A1M2VV58_TRAPU)

HSP 1 Score: 209 bits (532), Expect = 4.310e-55
Identity = 122/302 (40.40%), Postives = 176/302 (58.28%), Query Frame = 3
Query:  549 LLVAVYVDDLVIAGR-REKVDEFKHNISQRFRMKDLGSLSRVLGIEVRDDRPNGTITISQGSYIREVLKRYGFDECQGVPTPVEGKVKISAPESAN---KPSESKSLGEQLYASTGTRPDIAYAVHPAACRMEDPCQEDFSTCNRIFRYLSTVPDLGITF---GGKNNGHGLEGFVDADWAEDVEDRKSTTGYVFKLKGGAISWCSKKQQLVTWSSADAENLAAGKAGEETLYFRELLESIGF---------GCRGSTTLFEDHKSAINLSKGSGAHSRTKHTGVRWHGIRGVDSRKSIGIE 1406
            L++A+YVDD++IAG  R  +D FK  +S+RF M DLGS   +LG+E+  DR   T++ISQ  YI ++L+R+G   C+ V TP+E  +K+     A    KP +S +LG  +YA  G+RPD+A+AV   +     P  + +    R+FRYL    DL +++      +NG    G+ DADWA DV DR+ST+G  F L GGA+SW SKKQQ +  SS +AE +A   A +E L+ R LL+ +           G + +  L  D++SA+ L+K S  H RTKH  VR H IR    R ++  E
Sbjct: 1178 LIIALYVDDMLIAGNDRTTIDAFKSTLSERFEMTDLGSARWILGMEIERDRARHTLSISQAQYIEKILERHGMANCRPVSTPMEPNLKLEKLSEATIDPKPYQS-ALGSLMYAMLGSRPDLAFAVGALSKHSATPGPQHWKALMRVFRYLRGSSDLCLSYKPDSEHSNGATPLGYCDADWAGDVNDRRSTSGQAFFLHGGAVSWQSKKQQSIAQSSTEAEYVALASAAKEALWLRALLDDLAIPASISRSSPGSKVTPLLLVDNQSAMALAKNSTFHDRTKHIAVRHHFIRDEIERGTLEAE 1478          
BLAST of mRNA_H-paniculata_contig31025.8390.1 vs. uniprot
Match: H3H7M7_PHYRM (CCHC-type domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H7M7_PHYRM)

HSP 1 Score: 208 bits (530), Expect = 6.690e-55
Identity = 120/317 (37.85%), Postives = 180/317 (56.78%), Query Frame = 3
Query:  495 SITDSCPYFSHDEGGETNLLVAVYVDDLVIAGR-REKVDEFKHNISQRFRMKDLGSLSRVLGIEVRDDRPNGTITISQGSYIREVLKRYGFDECQGVPTPVEGKVKISAPESANKPSESKS----------LGEQLYASTGTRPDIAYAVHPAACRMEDPCQEDFSTCNRIFRYLSTVPDLGITFGGKNNGHGLEGFVDADWAEDVEDRKSTTGYVFKLKGGAISWCSKKQQLVTWSSADAENLAAGKAGEETLYFRELLESIGFGCRGSTTLFEDHKSAINLSKGSGAHSRTKHTGVRWHGIRGVDSRKSIGIEIR 1412
            S  D C Y    +   +  ++ VYVDDL+I  R + ++ E K  + + F +K+LG L   LGIE+  +R + TI ++Q +YI+ + + +G ++C+ V TP +   K+       KPSE +           +G  +Y +T TRPDIA AV   A   E   +  +    RI +YL T PDLG+ F G   G  L G+ DA+WA D++ R+STTGYVF L G AISW SK+Q  V  SS +AE +A   A +E ++ R+LL  +G  C G+TT+F+D++  I L+K    HSRTKH  +++H +R     K I +E +
Sbjct:  840 SAADPCVYVRRSDSKFS--IIIVYVDDLMIFSRTKAEIGEIKKALKREFSIKELGELKYCLGIEIHRNRDDKTIVMNQRAYIQRLAEEFGVEKCKAVHTPADSNSKLV------KPSEDEDFVPRYPYRELVGALMYLATCTRPDIAQAVGEVAKFCERYNKSHWVAAKRILKYLKTTPDLGLVFNGGTKGE-LIGYADANWAGDLDTRRSTTGYVFFLNGSAISWKSKRQPTVATSSTEAEYMALYNATQEAVWLRQLLLDVGCECVGATTIFQDNQGCIALAKNPAYHSRTKHIDLKYHFLRVKVEDKVIVLEYK 1147          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig31025.8390.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7D9M6E1_PARCT2.930e-6037.62Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A7D9HZ03_PARCT2.910e-5737.30Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A0S7JP25_9TELE4.690e-5739.93POLX n=2 Tax=Poeciliopsis prolifica TaxID=188132 R... [more]
A0A1X7STY0_AMPQE1.550e-5638.56Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6S7HEL0_PARCT2.570e-5637.62Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A7D9KES8_PARCT1.360e-5537.91Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A7D9IUY0_PARCT1.660e-5537.50Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A0C9VSW1_SPHS41.860e-5540.63Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A1M2VV58_TRAPU4.310e-5540.40Retrovirus-related Pol polyprotein from transposon... [more]
H3H7M7_PHYRM6.690e-5537.85CCHC-type domain-containing protein n=1 Tax=Phytop... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig31025contigH-paniculata_contig31025:21..1563 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score134.4
Seed ortholog evalue5.7e-29
Seed eggNOG ortholog28532.XP_010555983.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs3884B@33090,3GZ1B@35493,3HXH8@3699,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelBrassicales
Best eggNOG OGNA|NA|NA
Exons2
Model size1458
Cds size591
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig31025.8390.1prot_H-paniculata_contig31025.8390.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig31025 36..626 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929954.1340897-UTR-H-paniculata_contig31025:20..351622929954.1340897-UTR-H-paniculata_contig31025:20..35Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig31025 21..35 +
1691481084.8924584-UTR-H-paniculata_contig31025:20..351691481084.8924584-UTR-H-paniculata_contig31025:20..35Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig31025 21..35 +
1622929954.1639843-UTR-H-paniculata_contig31025:626..8801622929954.1639843-UTR-H-paniculata_contig31025:626..880Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig31025 627..880 +
1691481084.9111948-UTR-H-paniculata_contig31025:626..8801691481084.9111948-UTR-H-paniculata_contig31025:626..880Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig31025 627..880 +
1622929954.1828256-UTR-H-paniculata_contig31025:965..15631622929954.1828256-UTR-H-paniculata_contig31025:965..1563Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig31025 966..1563 +
1691481084.9212904-UTR-H-paniculata_contig31025:965..15631691481084.9212904-UTR-H-paniculata_contig31025:965..1563Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig31025 966..1563 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929954.15167-CDS-H-paniculata_contig31025:35..6261622929954.15167-CDS-H-paniculata_contig31025:35..626Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31025 36..626 +
1691481084.9030917-CDS-H-paniculata_contig31025:35..6261691481084.9030917-CDS-H-paniculata_contig31025:35..626Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31025 36..626 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig31025.8390.1

>prot_H-paniculata_contig31025.8390.1 ID=prot_H-paniculata_contig31025.8390.1|Name=mRNA_H-paniculata_contig31025.8390.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=197bp
MEEEWGASVKNGTWESEEPGRLPAGRKAIRTKWIFKRKPKEDGSVAHYKA
RLVAQGVSQVEGEDFFETSAPVARMSTIRTAFRLAAEKDFELEGVDVDAA
YLNAPVEEELFVRLPPEFSPFSLDIPFVRRLCKSLYGLKQSGRNWKNTLD
DFLVGLGLKRPLPTHARTFLTTKEERQIFWWPCMLTTWSLLVVVRK*
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mRNA from alignment at H-paniculata_contig31025:21..1563+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig31025.8390.1 ID=mRNA_H-paniculata_contig31025.8390.1|Name=mRNA_H-paniculata_contig31025.8390.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1543bp|location=Sequence derived from alignment at H-paniculata_contig31025:21..1563+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAATGGCGCGTGGCAATGGAGGAAGAATGGGGGGCGTCGGTGAAAAATGG GACATGGGAAAGCGAAGAGCCGGGGAGGTTACCCGCAGGGCGGAAGGCGA TTCGTACGAAATGGATTTTCAAGCGGAAACCGAAGGAGGACGGCAGCGTG GCACACTACAAAGCGCGACTGGTGGCTCAAGGGGTTTCCCAGGTGGAGGG TGAAGATTTCTTTGAAACTAGTGCCCCCGTAGCTCGCATGTCGACGATAC GTACTGCTTTTAGACTGGCCGCAGAAAAAGATTTCGAATTAGAAGGCGTG GACGTAGATGCGGCGTATTTGAACGCCCCGGTAGAAGAAGAGCTGTTTGT TAGGCTACCCCCCGAGTTTTCCCCTTTCTCCCTAGACATACCCTTTGTGC GCCGCCTGTGTAAAAGCCTGTACGGCCTCAAGCAGAGCGGCCGAAACTGG AAAAACACTCTTGACGATTTTCTTGTTGGGTTAGGACTCAAACGTCCATT ACCGACTCATGCCCGTACTTTTCTCACGACGAAGGAGGAGAGACAAATCT TCTGGTGGCCGTGTATGTTGACGACCTGGTCATTGCTGGTCGTCGTGAGA AAGTAGACGAGTTCAAGCATAACATAAGTCAGCGTTTTAGGATGAAAGAT TTGGGTTCTCTCTCGCGCGTGTTGGGAATAGAAGTACGAGATGATCGCCC TAATGGTACCATAACCATCTCGCAGGGTAGCTACATCCGCGAGGTACTAA AAAGATACGGTTTTGACGAGTGTCAAGGAGTACCCACCCCTGTAGAGGGA AAAGTGAAGATTTCGGCACCCGAGTCGGCCAACAAGCCCTCCGAATCGAA GTCACTCGGAGTTGTACTGTCGGACATAGGCGCAGGAGTACAAGAAAGCA GCAGAGGGAGAAGTGGCAATTCAACTGAATATAGAGACATGGTAGGAACA ATTGTACGCCTCGACAGGAACTAGACCTGATATAGCATACGCGGTACACC CAGCAGCATGTCGTATGGAGGACCCATGTCAAGAAGACTTCAGTACATGC AATCGCATTTTTCGTTATCTCAGTACTGTGCCTGACCTCGGCATTACGTT CGGCGGTAAGAATAATGGTCACGGTCTGGAAGGATTCGTTGATGCTGATT GGGCGGAAGATGTCGAGGATCGAAAGTCCACAACAGGATACGTTTTCAAG CTGAAGGGTGGTGCAATAAGTTGGTGCTCTAAGAAGCAACAATTAGTCAC GTGGTCCAGTGCAGATGCAGAGAACCTTGCTGCAGGAAAAGCGGGCGAGG AGACGCTATATTTTAGGGAGTTACTAGAATCGATAGGTTTCGGATGCAGG GGGAGCACGACATTATTTGAGGACCATAAATCAGCTATTAATCTCAGTAA GGGATCTGGCGCACACAGCAGGACGAAGCACACTGGAGTGCGCTGGCACG GAATTCGAGGGGTGGATTCGAGAAAGAGTATTGGCATTGAAATACGTGCA GACCGGCGATCAACTTGCTGACATTTTAACGAAAGGACTAAGC
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Coding sequence (CDS) from alignment at H-paniculata_contig31025:21..1563+

>mRNA_H-paniculata_contig31025.8390.1 ID=mRNA_H-paniculata_contig31025.8390.1|Name=mRNA_H-paniculata_contig31025.8390.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1182bp|location=Sequence derived from alignment at H-paniculata_contig31025:21..1563+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGGAAGAATGGGGGGCGTCGGTGAAAAATGGGACATGGGAAAGCGA
AGAGCCGGGGAGGTTACCCGCAGGGCGGAAGGCGATTCGTACGAAATGGA
TTTTCAAGCGGAAACCGAAGGAGGACGGCAGCGTGGCACACTACAAAGCG
CGACTGGTGGCTCAAGGGGTTTCCCAGGTGGAGGGTGAAGATTTCTTTGA
AACTAGTGCCCCCGTAGCTCGCATGTCGACGATACGTACTGCTTTTAGAC
TGGCCGCAGAAAAAGATTTCGAATTAGAAGGCGTGGACGTAGATGCGGCG
TATTTGAACGCCCCGGTAGAAGAAGAGCTGTTTGTTAGGCTACCCCCCGA
GTTTTCCCCTTTCTCCCTAGACATACCCTTTGTGCGCCGCCTGTGTAAAA
GCCTGTACGGCCTCAAGCAGAGCGGCCGAAACTGGAAAAACACTCTTGAC
GATTTTCTTGTTGGGTTAGGACTCAAACGTCCATTACCGACTCATGCCCG
TACTTTTCTCACGACGAAGGAGGAGAGACAAATCTTCTGGTGGCCGTGTA
TGTTGACGACCTGGTCATTGCTGGTCGTCGTGAGAAAGTAGATGGAGGAA
GAATGGGGGGCGTCGGTGAAAAATGGGACATGGGAAAGCGAAGAGCCGGG
GAGGTTACCCGCAGGGCGGAAGGCGATTCGTACGAAATGGATTTTCAAGC
GGAAACCGAAGGAGGACGGCAGCGTGGCACACTACAAAGCGCGACTGGTG
GCTCAAGGGGTTTCCCAGGTGGAGGGTGAAGATTTCTTTGAAACTAGTGC
CCCCGTAGCTCGCATGTCGACGATACGTACTGCTTTTAGACTGGCCGCAG
AAAAAGATTTCGAATTAGAAGGCGTGGACGTAGATGCGGCGTATTTGAAC
GCCCCGGTAGAAGAAGAGCTGTTTGTTAGGCTACCCCCCGAGTTTTCCCC
TTTCTCCCTAGACATACCCTTTGTGCGCCGCCTGTGTAAAAGCCTGTACG
GCCTCAAGCAGAGCGGCCGAAACTGGAAAAACACTCTTGACGATTTTCTT
GTTGGGTTAGGACTCAAACGTCCATTACCGACTCATGCCCGTACTTTTCT
CACGACGAAGGAGGAGAGACAAATCTTCTGGTGGCCGTGTATGTTGACGA
CCTGGTCATTGCTGGTCGTCGTGAGAAAGTAG
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