mRNA_H-paniculata_contig30608.8295.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig30608.8295.1
Unique NamemRNA_H-paniculata_contig30608.8295.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig30608.8295.1 vs. uniprot
Match: D7G3F9_ECTSI (BTB domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3F9_ECTSI)

HSP 1 Score: 95.1 bits (235), Expect = 2.860e-21
Identity = 45/68 (66.18%), Postives = 54/68 (79.41%), Query Frame = 1
Query:    1 SLLDQVAAGFYHTLCLTGPMLSERVGGGGRDAVGNAKTLSSDLYRLLDNPAGSDVTFHVEGQLVYGHR 204
            S + QVAAGFYHTLCLTGP L  + G G    V ++K+LSSDLYRLL+NP+ SDVTF VEG++VYGHR
Sbjct:  368 SFVCQVAAGFYHTLCLTGPPLERKAGHGSAFVVRDSKSLSSDLYRLLNNPSQSDVTFTVEGKVVYGHR 435          
BLAST of mRNA_H-paniculata_contig30608.8295.1 vs. uniprot
Match: A0A6H5JNV5_9PHAE (BTB domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNV5_9PHAE)

HSP 1 Score: 91.3 bits (225), Expect = 3.590e-20
Identity = 43/68 (63.24%), Postives = 53/68 (77.94%), Query Frame = 1
Query:    1 SLLDQVAAGFYHTLCLTGPMLSERVGGGGRDAVGNAKTLSSDLYRLLDNPAGSDVTFHVEGQLVYGHR 204
            S + QVAAGFYHTLCLTGP L  + G G    V ++K+LSSDLYRLL+NP+ SDV F V+G++VYGHR
Sbjct:  150 SFVCQVAAGFYHTLCLTGPPLERKAGIGNAFVVRDSKSLSSDLYRLLNNPSRSDVAFAVDGKVVYGHR 217          
BLAST of mRNA_H-paniculata_contig30608.8295.1 vs. uniprot
Match: K3WGV0_GLOUD (BTB domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WGV0_GLOUD)

HSP 1 Score: 67.0 bits (162), Expect = 2.380e-11
Identity = 37/65 (56.92%), Postives = 44/65 (67.69%), Query Frame = 1
Query:   13 QVAAGFYHTLCLTGPMLSERVGGGGRDAVGNAKTLSSDLYRLLDNP-AGSDVTFHVEGQLVYGHR 204
            +VAAGFYH++CLTG +  +  G  G     N  TL+SDL RLL+NP A SDVTF VEGQ  Y HR
Sbjct:  390 KVAAGFYHSVCLTGDL--DGAGAIGGSGKANKATLNSDLRRLLNNPDAHSDVTFLVEGQPFYAHR 452          
BLAST of mRNA_H-paniculata_contig30608.8295.1 vs. uniprot
Match: A0A7S2RFP8_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2RFP8_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 3.290e-11
Identity = 32/66 (48.48%), Postives = 42/66 (63.64%), Query Frame = 1
Query:    7 LDQVAAGFYHTLCLTGPMLSERVGGGGRDAVGNAKTLSSDLYRLLDNPAGSDVTFHVEGQLVYGHR 204
            +  + AGFYH++CLT P  S++             TLSSDL  +L+NPA SDVTFHVEG+ +Y HR
Sbjct:  406 VTSIGAGFYHSVCLTEPDTSQQH---------PTSTLSSDLRNMLNNPARSDVTFHVEGRPIYAHR 462          
BLAST of mRNA_H-paniculata_contig30608.8295.1 vs. uniprot
Match: A0A7S3XQJ6_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XQJ6_HETAK)

HSP 1 Score: 65.1 bits (157), Expect = 1.150e-10
Identity = 37/64 (57.81%), Postives = 47/64 (73.44%), Query Frame = 1
Query:   16 VAAGFYHTLCLTGPML-SERVGGGGRDAVGNAKTLSSDLYRLLDNPAGSDVTFHVEGQLVYGHR 204
            VAAGFYHT+ L GP L ++R   GGR A   A TL+SDL R+L+NPA SDVTF ++G+ V+ HR
Sbjct:  451 VAAGFYHTVLLAGPPLDADR---GGRRAP--AATLASDLRRMLNNPARSDVTFLLQGRAVHAHR 509          
BLAST of mRNA_H-paniculata_contig30608.8295.1 vs. uniprot
Match: A0A2R5FYH2_9STRA (RCC1 and BTB domain-containing protein 2 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5FYH2_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 1.030e-9
Identity = 33/67 (49.25%), Postives = 43/67 (64.18%), Query Frame = 1
Query:    7 LDQVAAGFYHTLCLTG-PMLSERVGGGGRDAVGNAKTLSSDLYRLLDNPAGSDVTFHVEGQLVYGHR 204
            + Q+AAGFYH++CLTG P  S  V            TLS DL ++L+NPA +DVTF VEG+ +Y HR
Sbjct:  552 VSQIAAGFYHSVCLTGQPDRSSEV---------PTSTLSLDLRKMLNNPARADVTFVVEGRPLYAHR 609          
BLAST of mRNA_H-paniculata_contig30608.8295.1 vs. uniprot
Match: A0A3R7YCR5_9STRA (BTB domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R7YCR5_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 6.540e-9
Identity = 30/64 (46.88%), Postives = 40/64 (62.50%), Query Frame = 1
Query:   13 QVAAGFYHTLCLTGPMLSERVGGGGRDAVGNAKTLSSDLYRLLDNPAGSDVTFHVEGQLVYGHR 204
            ++AAGFYH++C+TG        G  R A   A +L  DL  L+DNP  SDV F V+G++VY HR
Sbjct:  283 KIAAGFYHSVCITGTSSF----GPTRGAAAAAPSLGRDLASLVDNPVRSDVRFVVDGRVVYAHR 342          
BLAST of mRNA_H-paniculata_contig30608.8295.1 vs. uniprot
Match: W4GLY2_9STRA (BTB domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GLY2_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 6.650e-9
Identity = 30/64 (46.88%), Postives = 40/64 (62.50%), Query Frame = 1
Query:   13 QVAAGFYHTLCLTGPMLSERVGGGGRDAVGNAKTLSSDLYRLLDNPAGSDVTFHVEGQLVYGHR 204
            ++AAGFYH++C+TG        G  R A   A +L  DL  L+DNP  SDV F V+G++VY HR
Sbjct:  362 KIAAGFYHSVCITGTSSF----GPTRGAAAAAPSLGRDLASLVDNPVRSDVRFVVDGRVVYAHR 421          
BLAST of mRNA_H-paniculata_contig30608.8295.1 vs. uniprot
Match: W4GMU2_9STRA (BTB domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GMU2_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 6.660e-9
Identity = 30/64 (46.88%), Postives = 40/64 (62.50%), Query Frame = 1
Query:   13 QVAAGFYHTLCLTGPMLSERVGGGGRDAVGNAKTLSSDLYRLLDNPAGSDVTFHVEGQLVYGHR 204
            ++AAGFYH++C+TG        G  R A   A +L  DL  L+DNP  SDV F V+G++VY HR
Sbjct:  362 KIAAGFYHSVCITGTSSF----GPTRGAAAAAPSLGRDLASLVDNPVRSDVRFVVDGRVVYAHR 421          
BLAST of mRNA_H-paniculata_contig30608.8295.1 vs. uniprot
Match: A0A7S2RUI3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RUI3_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 9.180e-9
Identity = 33/66 (50.00%), Postives = 41/66 (62.12%), Query Frame = 1
Query:   16 VAAGFYHTLCLTG---PMLSERVGGGGRDAVGNAKTLSSDLYRLLDNPAGSDVTFHVEGQLVYGHR 204
            VAAGFYHTL LTG   P+   R G           +L SDL ++L+NP+ SDVTF VEGQ ++ HR
Sbjct:  393 VAAGFYHTLVLTGKPHPLADRRDG----------PSLGSDLGKMLNNPSRSDVTFIVEGQPIFAHR 448          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig30608.8295.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
D7G3F9_ECTSI2.860e-2166.18BTB domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JNV5_9PHAE3.590e-2063.24BTB domain-containing protein n=1 Tax=Ectocarpus s... [more]
K3WGV0_GLOUD2.380e-1156.92BTB domain-containing protein n=1 Tax=Globisporang... [more]
A0A7S2RFP8_9STRA3.290e-1148.48Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]
A0A7S3XQJ6_HETAK1.150e-1057.81Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A2R5FYH2_9STRA1.030e-949.25RCC1 and BTB domain-containing protein 2 n=1 Tax=H... [more]
A0A3R7YCR5_9STRA6.540e-946.88BTB domain-containing protein n=1 Tax=Aphanomyces ... [more]
W4GLY2_9STRA6.650e-946.88BTB domain-containing protein n=1 Tax=Aphanomyces ... [more]
W4GMU2_9STRA6.660e-946.88BTB domain-containing protein n=1 Tax=Aphanomyces ... [more]
A0A7S2RUI3_9STRA9.180e-950.00Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig30608contigH-paniculata_contig30608:433..639 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score93.6
Seed ortholog evalue3.9e-17
Seed eggNOG ortholog2880.D7G3F9
KEGG koko:K11494
Hectar predicted targeting categoryother localisation
EggNOG free text desc.guanyl-nucleotide exchange factor activity
EggNOG OGsCOG5184@1,KOG1426@2759
Ec32 ortholog descriptionRegulator of chromosome condensation, RCC1
Ec32 orthologEc-19_004410.1
COG Functional cat.DZ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Exons1
Model size207
Cds size207
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929940.9802556-CDS-H-paniculata_contig30608:432..6391622929940.9802556-CDS-H-paniculata_contig30608:432..639Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig30608 433..639 -
1691481079.1492922-CDS-H-paniculata_contig30608:432..6391691481079.1492922-CDS-H-paniculata_contig30608:432..639Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig30608 433..639 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig30608.8295.1prot_H-paniculata_contig30608.8295.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig30608 433..639 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig30608.8295.1

>prot_H-paniculata_contig30608.8295.1 ID=prot_H-paniculata_contig30608.8295.1|Name=mRNA_H-paniculata_contig30608.8295.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=69bp
SLLDQVAAGFYHTLCLTGPMLSERVGGGGRDAVGNAKTLSSDLYRLLDNP
AGSDVTFHVEGQLVYGHR*
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mRNA from alignment at H-paniculata_contig30608:433..639-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig30608.8295.1 ID=mRNA_H-paniculata_contig30608.8295.1|Name=mRNA_H-paniculata_contig30608.8295.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=207bp|location=Sequence derived from alignment at H-paniculata_contig30608:433..639- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCGCTGCTCGATCAGGTAGCGGCGGGCTTTTATCACACGCTCTGTCTTAC GGGGCCTATGCTTAGTGAACGAGTGGGCGGAGGTGGCCGCGATGCTGTGG GCAACGCCAAGACTCTTAGCTCAGACTTGTATCGACTCCTCGACAATCCG GCCGGAAGTGACGTTACCTTTCATGTGGAAGGACAGCTCGTCTATGGGCA CAGGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig30608:433..639-

>mRNA_H-paniculata_contig30608.8295.1 ID=mRNA_H-paniculata_contig30608.8295.1|Name=mRNA_H-paniculata_contig30608.8295.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=414bp|location=Sequence derived from alignment at H-paniculata_contig30608:433..639- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCGCTGCTCGATCAGGTAGCGGCGGGCTTTTATCACACGCTCTGTCTTAC
GGGGCCTATGCTTAGTGAACGAGTGGGCGGAGGTGGCCGCGATGCTGTGG
GCAACGCCAAGACTCTTAGCTCAGACTTGTATCGACTCCTCGACAATCCG
GCCGGAAGTGACGTTACCTTTCATGTGGAAGGACAGCTCGTCTATGGGCA
CAGGTGATCGCTGCTCGATCAGGTAGCGGCGGGCTTTTATCACACGCTCT
GTCTTACGGGGCCTATGCTTAGTGAACGAGTGGGCGGAGGTGGCCGCGAT
GCTGTGGGCAACGCCAAGACTCTTAGCTCAGACTTGTATCGACTCCTCGA
CAATCCGGCCGGAAGTGACGTTACCTTTCATGTGGAAGGACAGCTCGTCT
ATGGGCACAGGTGA
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