mRNA_H-paniculata_contig3058.8285.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3058.8285.1
Unique NamemRNA_H-paniculata_contig3058.8285.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig3058.8285.1 vs. uniprot
Match: D7G6Y5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6Y5_ECTSI)

HSP 1 Score: 66.6 bits (161), Expect = 7.820e-10
Identity = 42/96 (43.75%), Postives = 60/96 (62.50%), Query Frame = 1 
Query:  295 MFRGALVGLIALVASANAFIGLVP--AVPRTQSCAGALKMVTQPQVSAPSSAKMPPSLEPVYTETLQKMEKEAMSELEKTFDEIAKKAEAESEALW 576
            M R A V ++AL ASANAF+  VP  ++ RT   +  ++MVT    +  +      S E  YT  L+KME E+++ELEK F+E AKKA+AES+ +W
Sbjct:    1 MVRTAFVSVVALSASANAFLAPVPGYSLARTSRASAPIQMVTSATPAVSTGEGKMVSNEETYTAALKKMEAESLAELEKAFEETAKKAKAESDKIW 96
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3058.8285.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G6Y5_ECTSI7.820e-1043.75Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3058contigH-paniculata_contig3058:14127..17846 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorychloroplast
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-01_011760.1
Exons3
Model size1658
Cds size426
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3058.8285.1prot_H-paniculata_contig3058.8285.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3058 15646..16908 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929939.6976335-UTR-H-paniculata_contig3058:14126..143831622929939.6976335-UTR-H-paniculata_contig3058:14126..14383Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3058 14127..14383 +
1691481078.6095517-UTR-H-paniculata_contig3058:14126..143831691481078.6095517-UTR-H-paniculata_contig3058:14126..14383Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3058 14127..14383 +
1622929939.7159562-UTR-H-paniculata_contig3058:15608..156451622929939.7159562-UTR-H-paniculata_contig3058:15608..15645Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3058 15609..15645 +
1691481078.6190026-UTR-H-paniculata_contig3058:15608..156451691481078.6190026-UTR-H-paniculata_contig3058:15608..15645Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3058 15609..15645 +
1622929939.766934-UTR-H-paniculata_contig3058:16908..178461622929939.766934-UTR-H-paniculata_contig3058:16908..17846Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3058 16909..17846 +
1691481078.6437948-UTR-H-paniculata_contig3058:16908..178461691481078.6437948-UTR-H-paniculata_contig3058:16908..17846Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3058 16909..17846 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929939.729644-CDS-H-paniculata_contig3058:15645..157451622929939.729644-CDS-H-paniculata_contig3058:15645..15745Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3058 15646..15745 +
1691481078.6277392-CDS-H-paniculata_contig3058:15645..157451691481078.6277392-CDS-H-paniculata_contig3058:15645..15745Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3058 15646..15745 +
1622929939.7490847-CDS-H-paniculata_contig3058:16582..169081622929939.7490847-CDS-H-paniculata_contig3058:16582..16908Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3058 16583..16908 +
1691481078.6361432-CDS-H-paniculata_contig3058:16582..169081691481078.6361432-CDS-H-paniculata_contig3058:16582..16908Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3058 16583..16908 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3058.8285.1

>prot_H-paniculata_contig3058.8285.1 ID=prot_H-paniculata_contig3058.8285.1|Name=mRNA_H-paniculata_contig3058.8285.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=142bp
MFRGALVGLIALVASANAFIGLVPAVPRTQSCAGALKMVTQPQVSAPSSA
KMPPSLEPVYTETLQKMEKEAMSELEKTFDEIAKKAEAESEALWDPVNKD
VEKLEKENAGQSTFLEEAMKKIPMLPGYTPPFMDVVDTPSK*
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mRNA from alignment at H-paniculata_contig3058:14127..17846+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3058.8285.1 ID=mRNA_H-paniculata_contig3058.8285.1|Name=mRNA_H-paniculata_contig3058.8285.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3720bp|location=Sequence derived from alignment at H-paniculata_contig3058:14127..17846+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AACCAACCTCGGTAAGCTATTCTTGTCTGTGAAGCTTACTAATACAATGT
AGTCAGTGCCAGTGTGGAGGGGGAGCTCGAAGAGTAGAGAAAGCACGTTC
TTTTTTATCCTTCGCGCCCCATTTTCAACAAATCCCAAACCCAACAAGCG
CAGCAGTTTTCACTGACGTTGAGTTTACCTATAGTGCCACCTTGGGTTAG
ACACCGCCCCATTTCAGTCAGGGAAGTCCAGACTGGAACAGGGTCGGCTT
CGTTTCAGTGAGTAGGGTCCTGTGGAATGTCGATGGTTCGTTCGGGGAGT
GGAGTGGTGTGTGGAGGCTTACTTTCGTTGTATCTTGGCTTGCATGAACC
GCCTGCTCTGTTTGCATGTAAGTCTACGGTTCATGCACTTGATGGCTGAA
AGTTGTACTTGAGATGTGTTGCGCAGCTAATCCATCCAAGGCATGTGGTT
CGACGTCTTCAGGTAATGCTCTGATGCCGAAGCCTCATGAGCAGAGTACA
CTCGTGCCACCCTGCGAAGACATCCTGCTGATAAAGGATGCTTGGAGATG
ATTAGGTTGGCTGTCGTTGTGGCGTGTGCCGTCTGTATTTTAAACAGATT
GATCATTCTGACCATTGCTCCATTTTTTCCATCCTGAGTTCAAGTCGCCT
TCGTTCTTCATGTTTTGCTCGCCCCGGATTCCACGACTGGTGTGCGTTTT
CAGGTAGTCAGACATTTGGCAATTGTCTCATGGTGTGTCTTGTGTTCCCA
CCCGCACCCAACGAGGCAGTGACCTTCGATGGGTGGTGCATGAAAAGGAT
TTTCTGGTCCTTTCGTTGAAAAGGGATTTTGCCTGCTTATTAGCTTGTAG
TTATTCTCCGCCAATCGCATGCTATACTTAGTGTCTGTTCGTCAGGTGCA
CTACTGCTGTCATCCAGCAGGAACAGATAACTTGAAATTACTGTATATCG
TATCGTGGACTGTCGTGTGTGGCTAACTCTTCCGTCGACGGTGCTGTTTT
TTTTATCATACGAATGTACGTGGGAAGAAGGGCGGGAGGGGATCACCGAA
ATGACGGTGAAGCGATGTCTTCGCTGTGTGTTGGCAGATTGCAGGATATG
AATTCTGCGTATGTGCGGCTGGCCCATCCTATGAATACGATTTTGCCGGG
GTCCTGCCTTTAAGATGGAAAACATGCACGTTAGAAGTACCCTTTCTACC
TGAACTGTACAGGTTGTAGTGAGGGCAGAATTCGCTGTCGCAAGAAATTG
CGGTGATAATTTGATATATCGATATTCTGATGGTCACGAGTCGTGCAAGT
GATACATTGCAGAAGGTCTTGCCTCGTTCCATTTTCTGTTCGTAAAATGT
TTTTTCTTTTTTTGTTTATAACGGCTTCACCGATCCTCAAGATTTGGTTG
ATCTCGGTGAACTCCCTCATGACCCTCGTGCCCCCCTCTCTGAATCCGCT
GTCCGTCGTTCGGTTCTTCAATGTTGTGGCAGACACTTGCCGAATTTTGC
AGTAAAACTTGTTGGCAATATGTTTCGCGGTGCATTGGTGGGCTTGATCG
CCCTTGTGGCCTCAGCGAACGCGTTCATAGGACTCGTCCCCGCGGTGCCA
CGTACGCAAAGCTGTGCTGGTGAGACATGATACAGGCGTCCATTTCTAGA
GAGCTCTAGTATAGTGAGCTTGCACATGTTGAGTATGATTACGCTTCTGA
AACTACCATCAGCATTCAAGTCCTTGGTCAGTGGGAGGGGCCGTAGGGCC
GAGTATCAGTAGCTGTCGAGTGCCAAATGCGAAGATTACCACATCATTTC
GTTTTTACCCGGAATTGATATCCTGTTTCGGCGACATCAAGTTGAATTGT
CGATATTTACTTTCCCATTATTTTCGACTGGCAATACTACTTCACCCAGG
AATCATCATTTCATGCGATGGCCATGAGCTATCGACTATTTCCTTGGGCA
GAGGTGGTCATGTCTTGCATTGTAATTACGTCTAGGAGATCTTACAACGA
GTCGAACCGGGATAATCGCAGGCAAGACCCCCAACATGCCTAGCTAGGCA
CAAGATGAAACATGTATGAAGCTGGACAGTGTAGGCCAAAAAAAGGCCAC
CGAGTTGGGTTTTGCTTGAGGGTCGATATTCAATAGCTTCACCTTCGAAA
AGCCGCAGACGCGAGGTCTTTTCACGGCGAATGCCTCGCAATTTACATGG
CATCGTCAGTTCTTCGAATGTCAACTATTGTGTAATTCCCATAATATTGT
TGACTTGACCCTTCAGCGAGAAATGTGCTAGTTGATGTCATGGAAGGACT
TCTCGTTAATGAAAATACGTAGGATTGGGCGGCGATCACTGACCTGCACA
TGAAATGAAAATAATCGCTAGTCAGATGCATTGTCGAGAACATGACAGAA
AGGAGAGTTGGATCTTTAGTAACGGGTAAATTTATTGTCCGGATTGGTGT
TCTCAGGTGCCCTAAAGATGGTCACCCAGCCACAGGTCAGCGCCCCGTCA
TCTGCCAAGATGCCTCCGTCATTGGAGCCAGTCTACACGGAAACGTTGCA
AAAGATGGAGAAGGAAGCCATGTCGGAGCTTGAGAAGACCTTTGACGAGA
TCGCCAAGAAGGCGGAGGCAGAATCAGAGGCTCTCTGGGATCCGGTAAAC
AAAGACGTGGAGAAACTTGAGAAAGAAAACGCTGGTCAGTCCACCTTCTT
GGAAGAAGCAATGAAGAAGATTCCGATGCTTCCGGGGTACACTCCCCCTT
TCATGGACGTGGTGGACACTCCTTCGAAGTAGAGAATCATCTCCTTTTTC
CATTCAGAACCCGGCTGGTGGACAAGGGAACGCACTGCACGAAACTAGCT
GTTAGACGTGGTGTCTCCTGTCAGGCAATTTAGGTTTGATTGCCGTCTGA
CGGGAGATGGCTCAGCTCTCCTGTCACATGAGGGGTGTAGCTGAAAGAGG
CGTGTGTTGGGGGTCGTTTATCTCCCGCGGCTAATACCCGAGATGGGTTG
CTGAGCATTAGATTCGCATTGATTATTAGAAGGCAAAGCCAGTCGCCGAG
TTTTGCCTCATGGAATATCTTGCCATGGGTGTGTGTACATGCTTTTCCTT
CGGCACACTCTCCTTCTGCCATCCTTGTATGGTTTTCGAATGACAGTCGG
GCGTTTCAGTCGAAAAAGCTTGGATTTACACTATAGCATATTTCAATGAT
CTTTCGCCAGTGTCAAGTGACGAATCTTGGACGCCACACCATCTATTTAG
TTCTCATGTTTAATGCGTCTGTTTTGATATGTTGGTATATGTCGAGTGTT
GCATATCTTGATTTGAGGGTGGAGCAACTGGATAAGACTTGGCTCGCTCA
ATTGATGACTTTGGCATGGAAGCGTTATAGAGGGGGCAGGGGGAGGAATG
TGCCTAGAATTTTGGTTCAGAGAACTTGAAGAAAGAAAAGGGGACCGACT
TGACTTAATCAACACTCTCTGGTTCGCCTGCAGCGCGGATGAGAGTTTGG
AGAACTACAAATTCGCCGGTAGAAGCAGACGCACCGTGATTCTCGGAATC
TTTTTATTGCGAAGGTGGTGAGGAGAAGCGATGCAAGTTCCAAGCGTACA
AGAATTGGTCTGCAAGTCGTTCGACAAGCCTCATTTGGAGTGTCAATACC
ACAAACACGTTCACCATACAGTTTTCAACCGTCCAAAATAAATATCGTTT
ATTCCGAGGGCAGAAATTTG
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Coding sequence (CDS) from alignment at H-paniculata_contig3058:14127..17846+

>mRNA_H-paniculata_contig3058.8285.1 ID=mRNA_H-paniculata_contig3058.8285.1|Name=mRNA_H-paniculata_contig3058.8285.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=852bp|location=Sequence derived from alignment at H-paniculata_contig3058:14127..17846+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTTCGCGGTGCATTGGTGGGCTTGATCGCCCTTGTGGCCTCAGCGAA
CGCGTTCATAGGACTCGTCCCCGCGGTGCCACGTACGCAAAGCTGTGCTG
ATGTTTCGCGGTGCATTGGTGGGCTTGATCGCCCTTGTGGCCTCAGCGAA
CGCGTTCATAGGACTCGTCCCCGCGGTGCCACGTACGCAAAGCTGTGCTG
GTGCCCTAAAGATGGTCACCCAGCCACAGGTCAGCGCCCCGTCATCTGCC
AAGATGCCTCCGTCATTGGAGCCAGTCTACACGGAAACGTTGCAAAAGAT
GGAGAAGGAAGCCATGTCGGAGCTTGAGAAGACCTTTGACGAGATCGCCA
AGAAGGCGGAGGCAGAATCAGAGGCTCTCTGGGATCCGGTAAACAAAGAC
GTGGAGAAACTTGAGAAAGAAAACGCTGGTCAGTCCACCTTCTTGGAAGA
AGCAATGAAGAAGATTCCGATGCTTCCGGGGTACACTCCCCCTTTCATGG
ACGTGGTGGACACTCCTTCGAAGTAGGTGCCCTAAAGATGGTCACCCAGC
CACAGGTCAGCGCCCCGTCATCTGCCAAGATGCCTCCGTCATTGGAGCCA
GTCTACACGGAAACGTTGCAAAAGATGGAGAAGGAAGCCATGTCGGAGCT
TGAGAAGACCTTTGACGAGATCGCCAAGAAGGCGGAGGCAGAATCAGAGG
CTCTCTGGGATCCGGTAAACAAAGACGTGGAGAAACTTGAGAAAGAAAAC
GCTGGTCAGTCCACCTTCTTGGAAGAAGCAATGAAGAAGATTCCGATGCT
TCCGGGGTACACTCCCCCTTTCATGGACGTGGTGGACACTCCTTCGAAGT
AG
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