mRNA_H-paniculata_contig3058.8283.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3058.8283.1
Unique NamemRNA_H-paniculata_contig3058.8283.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig3058.8283.1 vs. uniprot
Match: D7G6Y6_ECTSI (SpoU_methylase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6Y6_ECTSI)

HSP 1 Score: 382 bits (982), Expect = 6.160e-127
Identity = 185/296 (62.50%), Postives = 234/296 (79.05%), Query Frame = 3
Query:  309 EKWDSWEFGSFKRNSYEELSLEKTLRDQPPVRLPSVMGGGTELLNEVLGAKTTSTDLEQAIDILKSYLTEDRTAKMAEVLAQRTGSTAVVFENPSNPNNVWACLRTLDSFGVQNAHVVSDPRTYTKKARRQTMCSAMGSQKWLTLHGHETPEEAVAKLKADGYRVVASDLSPSAVPIDQINWSVPTAIVLGNEERGISQSMRSLADETFAIPMRGFAQSFNMSVACSVILAHLSAIRALKHGDLTEDERRRITAGWLMQCVRGSDGILRRYGIAVPPDAIPNER-----VAGFSVR 1181
            ++WD+WEFG++K  ++ E   E   R   P ++ + +G  T  L +      T++DLE+A+D+LK YL+EDR ++M +VL QRT S  +VFENP+NPNNVWACLRTLDSFG+Q+AH+VSDP TY+K+AR +TMC+AMGSQKWLTLHGH+ PE+AVAKLK DGY+VVASDLSPSAVPI +I+WSVPTA+VLGNEERGIS SMR +AD TF IPMRGF +SFNMSVACS+ILAHLSA+RALKHGDL EDERR +   WLMQCVRGS+ IL+R GI +P +    ++     +AG+ VR
Sbjct:   75 DEWDTWEFGTWKTRTHSENVAEAAARAAGPAKVSTFIG--TRALVD-----QTASDLERAVDLLKGYLSEDRLSRMEDVLDQRTRSATLVFENPANPNNVWACLRTLDSFGIQHAHIVSDPSTYSKQARLKTMCTAMGSQKWLTLHGHDRPEDAVAKLKTDGYQVVASDLSPSAVPISEIDWSVPTAVVLGNEERGISDSMRDMADATFVIPMRGFVRSFNMSVACSIILAHLSAVRALKHGDLPEDERREVAVTWLMQCVRGSEHILKREGIDIPQEIFGTDKQRPQNIAGYRVR 363          
BLAST of mRNA_H-paniculata_contig3058.8283.1 vs. uniprot
Match: A0A836C8H0_9STRA (Alpha/beta knot methyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8H0_9STRA)

HSP 1 Score: 244 bits (623), Expect = 1.880e-74
Identity = 123/253 (48.62%), Postives = 169/253 (66.80%), Query Frame = 3
Query:  429 TELLNEVLGAKTTSTDLEQAIDILKSYLTEDRTAKMAEVLAQRTGSTAVVFENPSNPNNVWACLRTLDSFGVQNAHVVSDPRTYTKKARRQTMCSAMGSQKWLTLHGHETPEEAVAKLKADGYRVVASDLSPSAVPIDQINWSVP-TAIVLGNEERGISQSMRSLADETFAIPMRGFAQSFNMSVACSVILAHLSAIRALKHGDLTEDERRRITAGWLMQCVRGSDGILRRYGIAVPPDAI---PNERVAGFS 1175
            T+LL E+  A     ++E+AI+ L+ +   +R  ++ +VL +RT     VFENPSNPNNVWA LRT+DSFG+QN HV++DP  Y KK R  TM SAMGSQKWL+LHGH++  +    LKA GYR++ S L P AVP+D I+WS    A+  GNE+ G+S+ + +  D+TF IPMRGFA+SFN+SVA S++LA  +A   L+ GDL E ERR +   WL++ V   + +L+R GIA+P         E +AGFS
Sbjct:    7 TQLLAEMPVA-----EMERAIEALERFTQPERLGRLQDVLNKRTAHLCTVFENPSNPNNVWAALRTIDSFGIQNVHVIADPELYIKKGRLLTMSSAMGSQKWLSLHGHDSAADCARALKARGYRIIGSSLGPGAVPMDAIDWSARRVAVAFGNEKTGLSEGLLAQCDQTFYIPMRGFAESFNVSVALSIVLASAAAGGGLRGGDLGEGERRAVYLRWLLRTVAAGESVLQREGIALPQSMSLRRTEEGIAGFS 254          
BLAST of mRNA_H-paniculata_contig3058.8283.1 vs. uniprot
Match: A0A0G4EX06_VITBC (SpoU_methylase domain-containing protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4EX06_VITBC)

HSP 1 Score: 214 bits (544), Expect = 9.420e-62
Identity = 111/242 (45.87%), Postives = 153/242 (63.22%), Query Frame = 3
Query:  420 GGGTELLNEVLGA--KTTSTDLEQAIDILKSYLTEDRTAKMAEVLAQRTGSTAVVFENPSNPNNVWACLRTLDSFGVQNAHVVSDPRTYTKKAR-RQTMCSAMGSQKWLTLHGHETPEEAVAKLKADGYRVVASDLSPSAVPIDQINWSVPTAIVLGNEERGISQSMRSLADETFAIPMRGFAQSFNMSVACSVILAHLSAIRALKHGDLTEDERRRITAGWLMQCVRGSDGILRRYGIAVP 1136
            GG +E+ N  +    +    D E A++ L   ++ DR  ++  V++QRT     VFE P+NPNNVWACLRTLDSFG+Q+  V+  P  Y ++      M  A+GS +WL++   ++  EA+ +LK  G RV ASDL   +  +  ++ S P  IVLGNE  GIS+ MR LADETF +PMRGFA+SFN+SVAC+V  A+LS +  LK GDL+E ER  +   WLM+CV GS  +L R G+ VP
Sbjct:   67 GGSSEVDNVAVSMHDEPQGFDYESAVEALSPLVSPDRLERLQTVISQRTNHCQFVFEAPTNPNNVWACLRTLDSFGIQHTSVIRRPGGYDRQRDINGNMNVALGSSQWLSMQEFQSASEAIGQLKDRGVRVYASDLQEDSTALTSLDVSQPFTIVLGNERTGISEEMRGLADETFFVPMRGFAESFNLSVACAVTCAYLSQMGGLKWGDLSEGERAAVMTEWLMRCVPGSQQVLERKGLRVP 308          
BLAST of mRNA_H-paniculata_contig3058.8283.1 vs. uniprot
Match: A0A4D9CY40_9STRA (SpoU_methylase domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CY40_9STRA)

HSP 1 Score: 207 bits (526), Expect = 4.480e-60
Identity = 109/234 (46.58%), Postives = 149/234 (63.68%), Query Frame = 3
Query:  474 DLEQAIDILKSYLTEDRTAKMAEVLAQRTGSTAVVFENPSNPNNVWACLRTLDSFGVQNAHVVSDPRTYTKKARRQTMCSAMGSQKWLTLHGHETPEEAVAKLKADGYRVVASDLSP--SAVPIDQINWSVP-TAIVLGNEERGISQSMRSLADETFAIPMRGFAQSFNMSVACSVILAHLSAIRALKHGDLTEDERRRITAGWLMQCVRGSDGILRRYGIAVPPDAI-PNERV 1163
            D+  A + L  + T  R  ++ +++ +RT S   VFEN +NPNN+WACLR+LD+FGVQ AHV+ D   Y K  R     SAMGSQKWLT+  H +    VA LK +GY V+ASDL P  S  P+ ++ W+    AIV+GNEERGI++ MRSL D TF IPM GFA+SFN+S + +V LA +S++  LKHGDL   E+  +   WL++ V     ILRR G+ +  + I P  +V
Sbjct:   13 DVAAATECLSRFCTAARLERLRDIVNKRTKSVQFVFENVANPNNLWACLRSLDAFGVQYAHVILDTAHYRKPHRLAQAKSAMGSQKWLTVREHPSASACVAALKREGYYVLASDLKPGTSPKPVQEVKWAAQKVAIVMGNEERGITEEMRSLCDGTFQIPMMGFAESFNLSGSTAVTLAFVSSMGGLKHGDLPTAEKNLLLLRWLLRSVPQGPAILRREGLLIEDERILPTSKV 246          
BLAST of mRNA_H-paniculata_contig3058.8283.1 vs. uniprot
Match: W7UA00_9STRA (Trna rrna methyltransferase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7UA00_9STRA)

HSP 1 Score: 209 bits (532), Expect = 3.290e-59
Identity = 111/240 (46.25%), Postives = 154/240 (64.17%), Query Frame = 3
Query:  474 DLEQAIDILKSYLTEDRTAKMAEVLAQRTGSTAVVFENPSNPNNVWACLRTLDSFGVQNAHVVSDPRTYTKKARRQTMCSAMGSQKWLTLHGHETPEEAVAKLKADGYRVVASDLSP--SAVPIDQINWSVP-TAIVLGNEERGISQSMRSLADETFAIPMRGFAQSFNMSVACSVILAHLSAIRALKHGDLTEDERRRITAGWLMQCVRGSDGILRRYGIAVPPDA-IPNER-VAGFSV 1178
            D+  A + L  + T  R  ++ +++ +RT S   VFEN +NPNN+WACLR+LD+FGVQ AHV+ D   Y K  R     SAMGSQKWLT+  H +    VA LK +GY V+ASDL P  S  P+ ++NW+    AIV+GNEERGI++ MRSL D TF IPM GFA+SFN+S + +V LA +S++  LKHGDL   E+  +   WL++ V     ILRR G+ +  +  +P  + V G+S+
Sbjct:  154 DVAAATECLSRFCTAARLERLRDIVNKRTKSVQFVFENVANPNNLWACLRSLDAFGVQYAHVILDTAHYRKPHRLAQAKSAMGSQKWLTVREHPSASACVAALKREGYYVLASDLKPGTSPKPVQEVNWAAQKVAIVMGNEERGITEEMRSLCDGTFQIPMMGFAESFNLSGSTAVTLAFVSSMGGLKHGDLPTAEKNLLLLRWLLRSVPQGPAILRREGLLIEDERFLPTSKAVLGYSL 393          
BLAST of mRNA_H-paniculata_contig3058.8283.1 vs. uniprot
Match: A0A7S2A9L6_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A9L6_TRICV)

HSP 1 Score: 199 bits (507), Expect = 2.140e-55
Identity = 102/201 (50.75%), Postives = 140/201 (69.65%), Query Frame = 3
Query:  477 LEQAIDILKSYLTEDRTAKMAEVLAQRTGSTAVVFENPSNPNNVWACLRTLDSFGVQNAHVVSDPRTYTKKA---RRQTMCSAMGSQKWLTLHGHETPEEAVAKLKADGYRVVASDLSPSAVPIDQINWSV-PTAIVLGNEERGISQSMRSLADETFAIPMRGFAQSFNMSVACSVILAHLSAIR-----ALKHGDLTEDE 1052
            + +A DIL+ ++ +DR  ++  VL QRT  T  +FENPSNP+NVWACLRT+DSFGVQN  +V D   Y  K    +++ M +AMGS KWL+L  H + EEAV  +KA+GY++ ASDL+P++  + +++W V P  +V+GNEERGIS  MR +AD TF +PM GFA+SFN+SVA S+ LAH+SA       AL+ GDL   E
Sbjct:  172 VSRATDILRPFVGDDRYERIDSVLRQRTKRTKFLFENPSNPSNVWACLRTIDSFGVQNVDLVVDSGMYKGKMAVQQKRGMRTAMGSAKWLSLRNHPSTEEAVRAIKAEGYKIYASDLNPNSQDVREVDWDVGPVCVVMGNEERGISDEMREMADVTFTLPMVGFAESFNLSVATSITLAHMSAKSKDGRGALRPGDLDPHE 372          
BLAST of mRNA_H-paniculata_contig3058.8283.1 vs. uniprot
Match: A0A7S1Y6X6_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1Y6X6_9STRA)

HSP 1 Score: 196 bits (497), Expect = 2.970e-54
Identity = 106/235 (45.11%), Postives = 151/235 (64.26%), Query Frame = 3
Query:  483 QAIDILKSYLTEDRTAKMAEVLAQRTGSTAVVFENPSNPNNVWACLRTLDSFGVQNAHVVSDPRTYTKK---ARRQTMCSAMGSQKWLTLHGHETPEEAVAKLKADGYRVVASDLSPSAVPIDQINWSV----PTAIVLGNEERGISQSMRSLADETFAIPMRGFAQSFNMSVACSVILAHLSAIRA-------LKHGDLTEDERRRITAGWLMQCV---RGSDGILRRYGIAVP 1136
            +A + L+ ++ EDR  +M  VL QRT +   +FENPSNP+NVWACLRT+DSFGVQ+  +V     Y  K   A++  + +AMGS +WL+L  H T   AVAKLK++GY++ ASDL+P++  +  ++WS     P  IV+GNE RGISQ MR LADETF +PM GFA+SFN+SVA ++ LAHLSA          L+ GD+ E E  R+    ++  +   R +  +L+R  + +P
Sbjct:  140 RATETLRPFIREDRAERMESVLKQRTKNCRFLFENPSNPSNVWACLRTIDSFGVQDVDLVVQSGQYEGKGAIAQKSGLRTAMGSAQWLSLTNHPTTASAVAKLKSEGYKLYASDLNPNSKDVRDVDWSADGDRPICIVMGNEGRGISQEMRELADETFTLPMCGFAESFNLSVATAITLAHLSAKSGHENQEGPLRPGDMDEHEYNRLLLKGIIFSLPQRRTARALLKRNNVVLP 374          
BLAST of mRNA_H-paniculata_contig3058.8283.1 vs. uniprot
Match: A0A7S0Y847_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia delicatissima TaxID=44447 RepID=A0A7S0Y847_9STRA)

HSP 1 Score: 194 bits (493), Expect = 1.230e-53
Identity = 103/242 (42.56%), Postives = 155/242 (64.05%), Query Frame = 3
Query:  477 LEQAIDILKSYLTEDRTAKMAEVLAQRTGSTAVVFENPSNPNNVWACLRTLDSFGVQNAHVVSDPRTYTKK---ARRQTMCSAMGSQKWLTLHGHETPEEAVAKLKADGYRVVASDLSPSAVPIDQINWSV---PTAIVLGNEERGISQSMRSLADETFAIPMRGFAQSFNMSVACSVILAHLSAIR-------------ALKHGDLTEDERRRITAGWLMQCV---RGSDGILRRYGIAVP 1136
            + +AI+ L+ ++  DR  +++ VL QRT  +  +FENPSNP+NVWACLRT+DSFG+QN  V+ D   Y  K   ++++ M +AMGS +WLTL  H T +EA+ +++  G+++ ASDL+P++  +  I+W     P  IV+GNE+RGISQ MR +ADETF +PM GFA+SFN+SVA S+ LAH+SA                L+ GDL+E E   +    L+  +   R S  +L++ G+ +P
Sbjct:  136 IAKAIETLEPWINGDRLERVSGVLKQRTKHSKFLFENPSNPSNVWACLRTIDSFGMQNVDVIIDSGRYAGKQAISQKKGMRTAMGSAQWLTLTNHHTTKEAIDQIRDQGFKIYASDLNPNSKDVRDIDWDADDRPICIVMGNEDRGISQEMREMADETFTLPMSGFAESFNLSVATSITLAHMSAKSYNCQKDPDGKRKGPLRPGDLSEHEYNCLYLKGLLHSLPQKRMSKALLKKAGVELP 377          
BLAST of mRNA_H-paniculata_contig3058.8283.1 vs. uniprot
Match: A0A7S3PUK7_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PUK7_9STRA)

HSP 1 Score: 188 bits (477), Expect = 2.840e-51
Identity = 102/236 (43.22%), Postives = 148/236 (62.71%), Query Frame = 3
Query:  477 LEQAIDILKSYLTEDRTAKMAEVLAQRTGSTAVVFENPSNPNNVWACLRTLDSFGVQNAHVVSDPRTYTKKA---RRQTMCSAMGSQKWLTLHGHETPEEAVAKLKADGYRVVASDLSPSAVPIDQINWSV-PTAIVLGNEERGISQSMRSLADETFAIPMRGFAQSFNMSVACSVILAHLSAIR-----ALKHGDLTEDERRRITAGWLMQCV---RGSDGILRRYGIAVPPDAI 1148
            +  A  +L+ ++ EDR  K+A VL QRT  +  +FENPSNP+NVWACLRT+DSFGVQN   + D   Y  K    +++ M +AMGS +WL+L  H +  EA+ ++K  GY++ A+DL+ ++  +  ++W   P  +V+GNEERGISQ MR  ADETF +PM GFA+SFN+SVA S+ LAH+SA        L+ GDL E E   +    L+  +   R    +L++  I +P  A+
Sbjct:  148 VNSARGVLEPWINEDRLQKVARVLKQRTKRSKFLFENPSNPSNVWACLRTIDSFGVQNVDCIIDSGMYAGKQAIHQKKGMRTAMGSAQWLSLKNHLSTAEAIKEIKNQGYKIYATDLNSNSKDVRDLDWETSPICVVMGNEERGISQEMRDAADETFILPMCGFAESFNLSVATSITLAHMSAQSFGENGPLRKGDLDEHEYNCLYLKGLLNSLPQKRTGKLLLKQNNIIIPDRAL 383          
BLAST of mRNA_H-paniculata_contig3058.8283.1 vs. uniprot
Match: A0A7S4VNE4_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4VNE4_9STRA)

HSP 1 Score: 186 bits (473), Expect = 8.660e-51
Identity = 104/242 (42.98%), Postives = 153/242 (63.22%), Query Frame = 3
Query:  483 QAIDILKSYLTEDRTAKMAEVLAQRTGSTAVVFENPSNPNNVWACLRTLDSFGVQNAHVVSDPRTYTKKA---RRQTMCSAMGSQKWLTLHGHETPEEAVAKLKAD-GYRVVASDLSPSAVPIDQINWSV-PTAIVLGNEERGISQSMRSLADETFAIPMRGFAQSFNMSVACSVILAHLSAIRA--------------LKHGDLTEDERRRITAGWLMQCV---RGSDGILRRYGIAVPPD 1142
            +A  IL+ Y+  DR  ++  VL QRT +   +FENPSNP+NVWACLRT+DSFGVQN  +V +   Y  KA   +++ M +AMGS +WL+L  + T  +AV +++ + GY++ ASDL+P++  +  ++W V P  +V+GNE+RGIS+ MR+LADETF +PM GFA+SFN+SVA +V LAH+SA                 L+ GDL E E   +    L+  +   R    +L++ GI +P D
Sbjct:  132 EASAILEPYINADRLERIDSVLKQRTKNCRFLFENPSNPSNVWACLRTIDSFGVQNVDLVINSGLYEGKAAISQKRGMRTAMGSAQWLSLRNYMTTADAVREIREEKGYKIYASDLNPNSKDVRDLDWDVGPICVVMGNEDRGISEEMRNLADETFTLPMVGFAESFNLSVATAVTLAHMSASSRQKEVEGGETIVTGPLRPGDLDEHEFNCLRLKGLLNSLPQRRTGPALLKQKGIVLPDD 373          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3058.8283.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G6Y6_ECTSI6.160e-12762.50SpoU_methylase domain-containing protein n=2 Tax=E... [more]
A0A836C8H0_9STRA1.880e-7448.62Alpha/beta knot methyltransferase n=1 Tax=Tribonem... [more]
A0A0G4EX06_VITBC9.420e-6245.87SpoU_methylase domain-containing protein n=2 Tax=V... [more]
A0A4D9CY40_9STRA4.480e-6046.58SpoU_methylase domain-containing protein n=2 Tax=M... [more]
W7UA00_9STRA3.290e-5946.25Trna rrna methyltransferase n=1 Tax=Nannochloropsi... [more]
A0A7S2A9L6_TRICV2.140e-5550.75Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A7S1Y6X6_9STRA2.970e-5445.11Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A7S0Y847_9STRA1.230e-5342.56Hypothetical protein n=1 Tax=Pseudo-nitzschia deli... [more]
A0A7S3PUK7_9STRA2.840e-5143.22Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A7S4VNE4_9STRA8.660e-5142.98Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3058contigH-paniculata_contig3058:606..4295 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score383.6
Seed ortholog evalue1.1e-103
Seed eggNOG ortholog2880.D7G6Y6
KEGG koko:K00556
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.rRNA methyltransferase
EggNOG OGsCOG0566@1,KOG0838@2759
EC2.1.1.34
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03016
Exons6
Model size1469
Cds size1173
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3058.8283.1prot_H-paniculata_contig3058.8283.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3058 617..4010 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929939.0822263-UTR-H-paniculata_contig3058:605..6161622929939.0822263-UTR-H-paniculata_contig3058:605..616Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3058 606..616 +
1691481078.3804433-UTR-H-paniculata_contig3058:605..6161691481078.3804433-UTR-H-paniculata_contig3058:605..616Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3058 606..616 +
1622929939.2113981-UTR-H-paniculata_contig3058:4010..42951622929939.2113981-UTR-H-paniculata_contig3058:4010..4295Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3058 4011..4295 +
1691481078.4521036-UTR-H-paniculata_contig3058:4010..42951691481078.4521036-UTR-H-paniculata_contig3058:4010..4295Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3058 4011..4295 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929939.099258-CDS-H-paniculata_contig3058:616..9491622929939.099258-CDS-H-paniculata_contig3058:616..949Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3058 617..949 +
1691481078.4020076-CDS-H-paniculata_contig3058:616..9491691481078.4020076-CDS-H-paniculata_contig3058:616..949Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3058 617..949 +
1622929939.1176887-CDS-H-paniculata_contig3058:1337..15981622929939.1176887-CDS-H-paniculata_contig3058:1337..1598Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3058 1338..1598 +
1691481078.4101105-CDS-H-paniculata_contig3058:1337..15981691481078.4101105-CDS-H-paniculata_contig3058:1337..1598Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3058 1338..1598 +
1622929939.135253-CDS-H-paniculata_contig3058:2367..24861622929939.135253-CDS-H-paniculata_contig3058:2367..2486Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3058 2368..2486 +
1691481078.4178998-CDS-H-paniculata_contig3058:2367..24861691481078.4178998-CDS-H-paniculata_contig3058:2367..2486Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3058 2368..2486 +
1622929939.1531024-CDS-H-paniculata_contig3058:2728..28041622929939.1531024-CDS-H-paniculata_contig3058:2728..2804Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3058 2729..2804 +
1691481078.4259567-CDS-H-paniculata_contig3058:2728..28041691481078.4259567-CDS-H-paniculata_contig3058:2728..2804Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3058 2729..2804 +
1622929939.1714306-CDS-H-paniculata_contig3058:3172..33901622929939.1714306-CDS-H-paniculata_contig3058:3172..3390Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3058 3173..3390 +
1691481078.4341307-CDS-H-paniculata_contig3058:3172..33901691481078.4341307-CDS-H-paniculata_contig3058:3172..3390Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3058 3173..3390 +
1622929939.1935608-CDS-H-paniculata_contig3058:3844..40101622929939.1935608-CDS-H-paniculata_contig3058:3844..4010Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3058 3845..4010 +
1691481078.4428432-CDS-H-paniculata_contig3058:3844..40101691481078.4428432-CDS-H-paniculata_contig3058:3844..4010Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3058 3845..4010 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3058.8283.1

>prot_H-paniculata_contig3058.8283.1 ID=prot_H-paniculata_contig3058.8283.1|Name=mRNA_H-paniculata_contig3058.8283.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=391bp
MLLLCCCGIRIVQSVVDEGAMVAKATTLGLAVTSVTSGIVRCYGFLQPMV
TKLPKTSVSTYSEAARRKVYLCLFARRQVSTRGKSTVGEGEGEGEGEDGE
KWDSWEFGSFKRNSYEELSLEKTLRDQPPVRLPSVMGGGTELLNEVLGAK
TTSTDLEQAIDILKSYLTEDRTAKMAEVLAQRTGSTAVVFENPSNPNNVW
ACLRTLDSFGVQNAHVVSDPRTYTKKARRQTMCSAMGSQKWLTLHGHETP
EEAVAKLKADGYRVVASDLSPSAVPIDQINWSVPTAIVLGNEERGISQSM
RSLADETFAIPMRGFAQSFNMSVACSVILAHLSAIRALKHGDLTEDERRR
ITAGWLMQCVRGSDGILRRYGIAVPPDAIPNERVAGFSVR*
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mRNA from alignment at H-paniculata_contig3058:606..4295+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3058.8283.1 ID=mRNA_H-paniculata_contig3058.8283.1|Name=mRNA_H-paniculata_contig3058.8283.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3690bp|location=Sequence derived from alignment at H-paniculata_contig3058:606..4295+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTCGCCTGTTGATGTTGCTGCTGTGCTGCTGTGGTATTCGTATTGTGCAA TCTGTGGTAGACGAGGGGGCCATGGTGGCAAAAGCGACGACACTGGGCCT CGCGGTAACATCAGTTACATCTGGGATTGTTCGCTGCTATGGATTTTTGC AACCGATGGTCACCAAGCTACCAAAAACTAGCGTGTCAACATATTCTGAG GCGGCTAGACGCAAGGTGTATCTATGCTTATTCGCACGGAGACAAGTAAG CACCCGGGGTAAAAGTACAGTCGGTGAAGGTGAAGGTGAAGGTGAAGGAG AGGATGGCGAAAAGTGGGACTCGTGGGAATTCGGTTCTTTCAAGGTGGGA GTCTTTGGTGTATGATACTTGCTCAAACAAGGCTCAAATATCTCCTATGA ATGGCTACTACAGCCCAGTTATAAAGATGCTCAAATCTTAAATCAGAAAA TATTATGGATACCACCCCCAGTTTCACTCCTGCAACTGGCACTGTGTTGT TGCGGTTGTACTGTTGTCCTGTAACCAGAATGGTGCTTCTTTCTGCCGAC CACGTGACTTCATGACGTTAAATACACACCAGGTGTATGTGATAGACTGT GTAGTAAACACATTCGGACTCGCAGCGAGCTAAGACGATGTTTAAATAAC TTGGAAAAATCTCAACCCATGTTATGTCGTGGAACCTTTACTGTACTCAA CAAGATGGTGTCTATGCCATCTACCCTCGCAGCGCAATTCGTACGAGGAG CTAAGCTTGGAGAAAACACTGCGGGATCAACCGCCCGTTCGGCTGCCCAG CGTTATGGGGGGTGGTACGGAGCTGCTGAATGAGGTCTTGGGCGCCAAGA CCACTTCAACAGACCTAGAGCAAGCTATTGACATCCTCAAGAGCTACTTG ACGGAAGACAGGACAGCGAAGATGGCAGAGGTCTTGGCCCAGCGCACCGG CAGCACCGCCGTTGTGTTCGAGAATCCTTCCAACCCCAACAATGTGAGCA CTACTGCAAATCTTACGCATCATAGATCATAACTCAAGAATTGCCTGTTT TGCTCGTGAATGGGACATTGCAGTAAAATCAGGCCAAACAGCGCCTCAGG ATGTGTTCTGAGTTTTGAGGATTTGGGATATTTTTCCTCAGTCATAGTAA AGTCGGCTGTGTTTGGCAGATAATATCTTTAGATCTAAGACTGTCAAAAG GCTGCGGTTGGAATCATTGGAAAGCTGAAATCCGATACTCATGTGTGCTA TTCCGAAGTGCATTTCGATTTGTGTACCCGGATAAATGGCTACTTAAGGT TGGACTGGCTTTGACCTTTTTCACTTTTTTATTTTTTTATTTTCACGTTT TTCCATTGGAAAAAACCAAGTGGCAAAATTGTGGCATTTTTCAGGTCGAC GTAATTTTTTGCGTCGCGCGCACTCCCGATAGATTTCGTCGATTTCCGTG AAGTCTTGGGATCAACCCCAAAACATGTAGAATAATAAATTTATAAAATC GGAAATGATTTCACACCTCTGTAAACTCCACTGATCTTGTGGCACAAAAG AAGTAGCGATTGACCTATTACACTAATACGTAGTACACACGTGACGTGCA CTGGTCATCCCAGGCACAAGACATCAAATATGGATGCTCCACTGCAGAGT GGGGCCTAGAAGTGTCTAACCAAGAGGCTTGTGACGTGCTGTTATCATGC GCAAACTCCAACCTCTCAAGTTCGAGAGTTGGTCTCTCGCTTGCTCCTCG CACCGCTTGCAGGTTTGGGCGTGTTTACGAACTCTAGACTCGTTCGGAGT ACAGAACGCGCACGTCGTGTCCGACCCCAGGACGTACACGAAGAAAGCTA GGCGACAAACAATGTGCTCAGCAATGGGCAGGTAATGTTTCCTGATAGAT TACCTCTATACCGCGAACGCGTCATCTAGTACATGTAGAACTACACCACT TGTTTCCGGTTTTCAGCATATCGCAGGGGGATAAAGCACGAAGTGGTTGA GTTATTAAGTTCAATCGCGTCATATAACTACTGTAATTCTCAGCGCAGTC CGTCTGTCAGCAATGGTCTTCTATGCGCTTGTCAATGCGTACCTGCTCTT TCGTCGTCGTGTTATCGCCCTAGTCAGAAGTGGCTGACTCTTCACGGACA CGAAACTCCCGAAGAAGCTGTGGCCAAACTGAAAGCTGATGGATACCGGG TATGTGGCTCGCTTTTTTGAGTTATTTGCGCTTATTGCCGAACACCATGA GGATGTGTGCTCGAAACGTTGCCGCCCTCGACATACCGCCGGTGGCATGC GTGACACACTGCCTGCTGTACACGTCCCCAACCCTGCTGTGATGTTTCAC ATTTTCAGTATTGTTCCCAGAGGTTCGCCGCCACTATCTGCACAGTCTCG GGGATCTCGCAGACGACCGTGAGTGGGTCGGTTCTGTAACAGGGTGTCGA AGCTAGTTTCATACAGCAAAATGTCGGACACGCCTGAATCGCAAGTGAGG CACAAGCTTCTTGACACAAAGAAATATATATTTTTTCTCGGTCTCCAAAA AACACAATTCTTGACAGGTGGTGGCGAGTGATCTATCTCCGTCAGCCGTA CCCATCGATCAGATCAACTGGTCGGTGCCAACTGCGATAGTGCTGGGGAA CGAGGAGAGGGGTATCTCGCAGTCGATGCGGAGTCTAGCTGACGAAACTT TCGCCATTCCTATGAGAGGGTTCGCTCAGTCATTCAACATGTCGGTGGCA TGCTCTGTTATACTGGCACATCTCAGCGCCATCAGGTATGTACATGTCGA CGAGTCGTGTTTGTTTATGATCTTTCGGTTGCACGAAAGAGATGGTTATG TTAGAGCTGTAGCATGTACGTAACAGTCCTGACGATATTGAGTGTACTGC ACGAACTATCTTTTGGGGGGGGATAATATATTCAAGACGAAAAATCGATA ACAGGGCGTGTTCGACTCAAAATAACACCGTACAGCGGATATGGAATTTT TGCGGCAGTTAGCTGTATTTGACTGACGGACATTGCCTGAATTGGGTTGG AAACCTGTAAATCCCCTTATTAAGTCAAGCGGACTTGTATTGAATCAACA CGCCTTTGCTTGTTGATCTTTGAATGACCTATTTTGTCGGCCAACTGAGA CGAACATATTTTACTGATCCACCAATTTTAACGATTTCCTACACTCTGCA TGTCCCCTTCAATACCCCTGACCCAACGGTCATCGTAAGGGCTCTCAAAC ACGGCGATCTTACAGAGGACGAGCGACGAAGAATAACTGCTGGCTGGCTG ATGCAATGCGTACGAGGGTCGGACGGCATCTTGCGCAGATATGGCATTGC CGTTCCCCCAGACGCGATCCCAAACGAACGAGTGGCGGGGTTTTCTGTAC GGTGATGCCTGCGCCTAATTTCATTGAGCATCATAGTAATAATTCATGGC CAAAGCGTTTGTGGGGAGGACCCGATGAATGCTGTGATGCAACGCAACGG GTAGAGACATTAACGATTATGTCTCCAAGAGTTATGCACACACATTGAGC TTCTGCGCAGTTGGATCTTGTACACGCGTGGGACGGCATGACGTGCTGCA CTACTGTTTCGATCAAAGAGTCTCGTCACTCTGAGGGTATGTGTAGTTTG GCAATAATAACACGAGAGTACAGGATATCGACTTCGTAAT
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Coding sequence (CDS) from alignment at H-paniculata_contig3058:606..4295+

>mRNA_H-paniculata_contig3058.8283.1 ID=mRNA_H-paniculata_contig3058.8283.1|Name=mRNA_H-paniculata_contig3058.8283.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2346bp|location=Sequence derived from alignment at H-paniculata_contig3058:606..4295+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTGCTGCTGTGCTGCTGTGGTATTCGTATTGTGCAATCTGTGGTAGA
CGAGGGGGCCATGGTGGCAAAAGCGACGACACTGGGCCTCGCGGTAACAT
CAGTTACATCTGGGATTGTTCGCTGCTATGGATTTTTGCAACCGATGGTC
ACCAAGCTACCAAAAACTAGCGTGTCAACATATTCTGAGGCGGCTAGACG
CAAGGTGTATCTATGCTTATTCGCACGGAGACAAGTAAGCACCCGGGGTA
AAAGTACAGTCGGTGAAGGTGAAGGTGAAGGTGAAGGAGAGGATGGCGAA
AAGTGGGACTCGTGGGAATTCGGTTCTTTCAAGATGTTGCTGCTGTGCTG
CTGTGGTATTCGTATTGTGCAATCTGTGGTAGACGAGGGGGCCATGGTGG
CAAAAGCGACGACACTGGGCCTCGCGGTAACATCAGTTACATCTGGGATT
GTTCGCTGCTATGGATTTTTGCAACCGATGGTCACCAAGCTACCAAAAAC
TAGCGTGTCAACATATTCTGAGGCGGCTAGACGCAAGGTGTATCTATGCT
TATTCGCACGGAGACAAGTAAGCACCCGGGGTAAAAGTACAGTCGGTGAA
GGTGAAGGTGAAGGTGAAGGAGAGGATGGCGAAAAGTGGGACTCGTGGGA
ATTCGGTTCTTTCAAGCGCAATTCGTACGAGGAGCTAAGCTTGGAGAAAA
CACTGCGGGATCAACCGCCCGTTCGGCTGCCCAGCGTTATGGGGGGTGGT
ACGGAGCTGCTGAATGAGGTCTTGGGCGCCAAGACCACTTCAACAGACCT
AGAGCAAGCTATTGACATCCTCAAGAGCTACTTGACGGAAGACAGGACAG
CGAAGATGGCAGAGGTCTTGGCCCAGCGCACCGGCAGCACCGCCGTTGTG
TTCGAGAATCCTTCCAACCCCAACAATCGCAATTCGTACGAGGAGCTAAG
CTTGGAGAAAACACTGCGGGATCAACCGCCCGTTCGGCTGCCCAGCGTTA
TGGGGGGTGGTACGGAGCTGCTGAATGAGGTCTTGGGCGCCAAGACCACT
TCAACAGACCTAGAGCAAGCTATTGACATCCTCAAGAGCTACTTGACGGA
AGACAGGACAGCGAAGATGGCAGAGGTCTTGGCCCAGCGCACCGGCAGCA
CCGCCGTTGTGTTCGAGAATCCTTCCAACCCCAACAATGTTTGGGCGTGT
TTACGAACTCTAGACTCGTTCGGAGTACAGAACGCGCACGTCGTGTCCGA
CCCCAGGACGTACACGAAGAAAGCTAGGCGACAAACAATGTGCTCAGCAA
TGGGCAGGTTTGGGCGTGTTTACGAACTCTAGACTCGTTCGGAGTACAGA
ACGCGCACGTCGTGTCCGACCCCAGGACGTACACGAAGAAAGCTAGGCGA
CAAACAATGTGCTCAGCAATGGGCAGTCAGAAGTGGCTGACTCTTCACGG
ACACGAAACTCCCGAAGAAGCTGTGGCCAAACTGAAAGCTGATGGATACC
GGTCAGAAGTGGCTGACTCTTCACGGACACGAAACTCCCGAAGAAGCTGT
GGCCAAACTGAAAGCTGATGGATACCGGGTGGTGGCGAGTGATCTATCTC
CGTCAGCCGTACCCATCGATCAGATCAACTGGTCGGTGCCAACTGCGATA
GTGCTGGGGAACGAGGAGAGGGGTATCTCGCAGTCGATGCGGAGTCTAGC
TGACGAAACTTTCGCCATTCCTATGAGAGGGTTCGCTCAGTCATTCAACA
TGTCGGTGGCATGCTCTGTTATACTGGCACATCTCAGCGCCATCAGGTGG
TGGCGAGTGATCTATCTCCGTCAGCCGTACCCATCGATCAGATCAACTGG
TCGGTGCCAACTGCGATAGTGCTGGGGAACGAGGAGAGGGGTATCTCGCA
GTCGATGCGGAGTCTAGCTGACGAAACTTTCGCCATTCCTATGAGAGGGT
TCGCTCAGTCATTCAACATGTCGGTGGCATGCTCTGTTATACTGGCACAT
CTCAGCGCCATCAGGGCTCTCAAACACGGCGATCTTACAGAGGACGAGCG
ACGAAGAATAACTGCTGGCTGGCTGATGCAATGCGTACGAGGGTCGGACG
GCATCTTGCGCAGATATGGCATTGCCGTTCCCCCAGACGCGATCCCAAAC
GAACGAGTGGCGGGGTTTTCTGTACGGTGAGGCTCTCAAACACGGCGATC
TTACAGAGGACGAGCGACGAAGAATAACTGCTGGCTGGCTGATGCAATGC
GTACGAGGGTCGGACGGCATCTTGCGCAGATATGGCATTGCCGTTCCCCC
AGACGCGATCCCAAACGAACGAGTGGCGGGGTTTTCTGTACGGTGA
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