mRNA_H-paniculata_contig30537.8271.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig30537.8271.1
Unique NamemRNA_H-paniculata_contig30537.8271.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig30537.8271.1 vs. uniprot
Match: A0A6H5JR77_9PHAE (Glyco_trans_2-like domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JR77_9PHAE)

HSP 1 Score: 120 bits (302), Expect = 1.500e-29
Identity = 63/120 (52.50%), Postives = 74/120 (61.67%), Query Frame = 1
Query:    1 GDRCAMCGVLAQLAFEQGARYTVLFGDDVRLVSEKWTEEIRDAFQSIHRTAIPDAC----GVSAPV------GFGVVSFTELNSPGFPAFPVLHRNHLAIFPEVFPEAFINQDADPWIFQ 330
            G  C +   LAQ AF QGA YTVL GDDVRL+S  W  +I+D F+ + R           G+  P       GFGVV FT+  SPGFP FPVLHR H  IFPE+FP  F+NQDADPWIF+
Sbjct:  102 GQVCRVWRKLAQEAFRQGAEYTVLLGDDVRLLSPGWMGQIQDEFKLLQRELSSQTSVATEGLGRPFVDVLPHGFGVVCFTDKLSPGFPGFPVLHRTHGEIFPEIFPVKFVNQDADPWIFE 221          
BLAST of mRNA_H-paniculata_contig30537.8271.1 vs. uniprot
Match: A0A5N5QIV0_9AGAM (Uncharacterized protein n=1 Tax=Ceratobasidium theobromae TaxID=1582974 RepID=A0A5N5QIV0_9AGAM)

HSP 1 Score: 102 bits (254), Expect = 4.530e-23
Identity = 52/111 (46.85%), Postives = 65/111 (58.56%), Query Frame = 1
Query:    1 GDRCAMCGVLAQLAFEQGARYTVLFGDDVRLVSEKWTEEIRDAFQSIHRTAIPDACGVSAPVGFGVVSFTELNSPGFPAFPVLHRNHLAIFP-EVFPEAFINQDADPWIFQ 330
            G  CA+    A+ AF+    Y VL GDD+ L+ E W   I   FQ + R +         P GFG V+FT+L  PG P FPV+HR H+ IF  EV PEAFINQD DP++FQ
Sbjct:  469 GKVCALWRDAARGAFKNNCDYYVLMGDDIELLDEGWMRTIHSKFQQVSRES-------GGPNGFGCVAFTDLTFPGMPTFPVIHRTHMTIFDGEVIPEAFINQDGDPYLFQ 572          
BLAST of mRNA_H-paniculata_contig30537.8271.1 vs. uniprot
Match: A0A7S2W5J2_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2W5J2_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 3.840e-22
Identity = 56/116 (48.28%), Postives = 68/116 (58.62%), Query Frame = 1
Query:    1 GDRCAMCGVLAQLAFEQGARYTVLFGDDVRLVSEKWTEEIRDAFQSIHRTAIPDACGVSAPVGFGVVSFTELNSPGFPAFPVLHRNHLAIFPE------VFPEAFINQDADPWIFQ 330
            G  C    +L   AFE G  + VLFGDDV L SE W E+I   F+ I R      C V  P GFGVVSF +L  P FP FPVL ++H  IF +      +FP AFINQDADP+++Q
Sbjct:   97 GSVCHYWNILGCKAFENGCDFVVLFGDDVVLKSENWLEKIIQGFKEIERR-----CKV--PFGFGVVSFNDLTHPYFPTFPVLGKHHYKIFGDRKNSQGLFPSAFINQDADPYLWQ 205          
BLAST of mRNA_H-paniculata_contig30537.8271.1 vs. uniprot
Match: A0A8H6S5P1_9AGAR (Uncharacterized protein n=1 Tax=Mycena indigotica TaxID=2126181 RepID=A0A8H6S5P1_9AGAR)

HSP 1 Score: 94.7 bits (234), Expect = 2.270e-20
Identity = 47/111 (42.34%), Postives = 67/111 (60.36%), Query Frame = 1
Query:    1 GDRCAMCGVLAQLAFEQGARYTVLFGDDVRLVSEKWTEEIRDAFQSIHRTAIPDACGVSAPVGFGVVSFTELNSPGFPAFPVLHRNHLAIFP-EVFPEAFINQDADPWIFQ 330
            G  CA+    A+ A++ G  Y  LFGDDV L+ + W   I   FQ I   +       + P GFG V+F++++ PG P FPV+HR+H+ +F   V P+AFINQD DP++FQ
Sbjct:  463 GHVCALWRDCARTAWKDGCDYMALFGDDVELLDDGWLRGIHQEFQVISSVS-------NYPSGFGCVAFSDISFPGMPTFPVIHRSHMNMFSGNVIPDAFINQDGDPFLFQ 566          
BLAST of mRNA_H-paniculata_contig30537.8271.1 vs. uniprot
Match: A0A482SIS9_9ARCH (Glycosyltransferase n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SIS9_9ARCH)

HSP 1 Score: 92.0 bits (227), Expect = 1.940e-19
Identity = 47/116 (40.52%), Postives = 68/116 (58.62%), Query Frame = 1
Query:   10 CAMCGVLAQLAFEQGARYTVLFGDDVRLVSEK---------WTEEIRDAFQSIHRTAIPDACGVSAPVGFGVVSFTELNSPGFPAFPVLHRNHLAIFPEVFPEAFINQDADPWIFQ 330
            C +   LA  A +QG  Y VL GDDV +   +         W + I +AF  +H+   P     S P GFG V+  ++N+P FP FPVL + H+ IFP++FP+ F+NQDADP++F+
Sbjct:  103 CDIWRSLAMEAVDQGCFYLVLLGDDVNISVAQVSPPAPHTHWVDSIENAFHDLHKK-FP-----SLPFGFGCVALKDVNAPSFPTFPVLTKVHVRIFPDLFPKVFVNQDADPFVFE 212          
BLAST of mRNA_H-paniculata_contig30537.8271.1 vs. uniprot
Match: A0A8H4VI74_9AGAR (Uncharacterized protein n=1 Tax=Agrocybe pediades TaxID=84607 RepID=A0A8H4VI74_9AGAR)

HSP 1 Score: 91.3 bits (225), Expect = 3.720e-19
Identity = 46/111 (41.44%), Postives = 63/111 (56.76%), Query Frame = 1
Query:    1 GDRCAMCGVLAQLAFEQGARYTVLFGDDVRLVSEKWTEEIRDAFQSIHRTAIPDACGVSAPVGFGVVSFTELNSPGFPAFPVLHRNHLAIFP-EVFPEAFINQDADPWIFQ 330
            G  C +    A+ A+  G  Y VL GDDV L    W + + + F  + R           P+GFG V+FT+ + PG P FPV+HR H+ IF  +V P+AFINQD DP++FQ
Sbjct:  469 GHVCKIWQDCARKAWTDGCDYMVLMGDDVTLEDAGWLKAVHEEFNEVSRQN-------KTPLGFGCVAFTDTSFPGMPTFPVIHRTHMDIFNGDVVPDAFINQDGDPYLFQ 572          
BLAST of mRNA_H-paniculata_contig30537.8271.1 vs. uniprot
Match: S8EIK6_FOMPI (Uncharacterized protein n=1 Tax=Fomitopsis pinicola (strain FP-58527) TaxID=743788 RepID=S8EIK6_FOMPI)

HSP 1 Score: 89.0 bits (219), Expect = 2.400e-18
Identity = 45/111 (40.54%), Postives = 63/111 (56.76%), Query Frame = 1
Query:    1 GDRCAMCGVLAQLAFEQGARYTVLFGDDVRLVSEKWTEEIRDAFQSIHRTAIPDACGVSAPVGFGVVSFTELNSPGFPAFPVLHRNHLAIFP-EVFPEAFINQDADPWIFQ 330
            G  CA+    A+ A+E GA +  L GDDV L+   W   +  AF+ +  T          P GFG ++FT+ + PG P FPV+HR H+ IF  +V P  F+NQD DP++FQ
Sbjct:  456 GHVCALWRDCARAAWEDGADFMTLMGDDVILLDPSWMSTVVRAFEELSVTE-------GVPPGFGCIAFTDTSFPGMPTFPVIHRTHMDIFGGQVIPGFFVNQDGDPFLFQ 559          
BLAST of mRNA_H-paniculata_contig30537.8271.1 vs. uniprot
Match: UPI0004449523 (glycosyltransferase family 2 protein n=1 Tax=Stereum hirsutum (strain FP-91666) TaxID=721885 RepID=UPI0004449523)

HSP 1 Score: 84.3 bits (207), Expect = 1.000e-16
Identity = 46/111 (41.44%), Postives = 59/111 (53.15%), Query Frame = 1
Query:    1 GDRCAMCGVLAQLAFEQGARYTVLFGDDVRLVSEKWTEEIRDAFQSIHRTAIPDACGVSAPVGFGVVSFTELNSPGFPAFPVLHRNHLAIFP-EVFPEAFINQDADPWIFQ 330
            G  C++    A+ AF     Y VL GDDV L  + W   I   F  +       A   S P GFG VS T+ + PG P FP +HR H+ IF   + PEAF+NQD DP++FQ
Sbjct:  466 GHVCSLWRECARRAFADHCDYYVLMGDDVALDDDGWMTAIVAEFSKM-------ASKESVPEGFGCVSLTDTSFPGMPTFPTVHRTHMEIFDGTIVPEAFVNQDGDPFLFQ 569          
BLAST of mRNA_H-paniculata_contig30537.8271.1 vs. uniprot
Match: A0A371DK95_9APHY (NAD-dependent epimerase/dehydratase n=2 Tax=Polyporus TaxID=5637 RepID=A0A371DK95_9APHY)

HSP 1 Score: 83.6 bits (205), Expect = 1.870e-16
Identity = 47/111 (42.34%), Postives = 63/111 (56.76%), Query Frame = 1
Query:    1 GDRCAMCGVLAQLAFEQGARYTVLFGDDVRLVSEKWTEEIRDAFQSIHRTAIPDACGVSAPVGFGVVSFTELNSPGFPAFPVLHRNHLAIFP-EVFPEAFINQDADPWIFQ 330
            G  CA+    A+ A+E    Y VL GDDV L    W   I   F  +   ++ D   +  P G G V+FT+++ PG P FPV+HR HL IF  EV P+AF NQD DP+++Q
Sbjct:  451 GHVCALWRDAARRAYEDKCDYYVLMGDDVVLQDANWMSCIHRTFTEL---SVQDH-DLRLPHGVGCVAFTDMSFPGMPTFPVVHRTHLDIFHGEVVPDAFTNQDGDPFLYQ 557          
BLAST of mRNA_H-paniculata_contig30537.8271.1 vs. uniprot
Match: A0A7S0R1R1_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0R1R1_9CRYP)

HSP 1 Score: 81.6 bits (200), Expect = 3.700e-16
Identity = 39/113 (34.51%), Postives = 62/113 (54.87%), Query Frame = 1
Query:    1 GDRCAMCGVLAQLAFEQGARYTVLFGDDVRLVSEKWTEEIRDAFQSIHRTAIPDACGVSAPV---GFGVVSFTELNSPGFPAFPVLHRNHLAIFPEVFPEAFINQDADPWIFQ 330
            G  C    ++A  A   G+ + V+ GDDV++V   W   +   F  +H+        +  P    GFG ++ ++L + GFP FP+LH+ HL +  E+F   F+NQDADP++FQ
Sbjct:   74 GQICTYWKLMANQAVSAGSDFFVMLGDDVKIVDIDWIPAVMRDFDRMHKE-------LQLPADLFGFGCIALSDLQATGFPTFPILHKIHLKLLGELFSPLFVNQDADPFLFQ 179          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig30537.8271.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
A0A6H5JR77_9PHAE1.500e-2952.50Glyco_trans_2-like domain-containing protein n=2 T... [more]
A0A5N5QIV0_9AGAM4.530e-2346.85Uncharacterized protein n=1 Tax=Ceratobasidium the... [more]
A0A7S2W5J2_9STRA3.840e-2248.28Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]
A0A8H6S5P1_9AGAR2.270e-2042.34Uncharacterized protein n=1 Tax=Mycena indigotica ... [more]
A0A482SIS9_9ARCH1.940e-1940.52Glycosyltransferase n=1 Tax=archaeon TaxID=1906665... [more]
A0A8H4VI74_9AGAR3.720e-1941.44Uncharacterized protein n=1 Tax=Agrocybe pediades ... [more]
S8EIK6_FOMPI2.400e-1840.54Uncharacterized protein n=1 Tax=Fomitopsis pinicol... [more]
UPI00044495231.000e-1641.44glycosyltransferase family 2 protein n=1 Tax=Stere... [more]
A0A371DK95_9APHY1.870e-1642.34NAD-dependent epimerase/dehydratase n=2 Tax=Polypo... [more]
A0A7S0R1R1_9CRYP3.700e-1634.51Hypothetical protein (Fragment) n=1 Tax=Cryptomona... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig30537contigH-paniculata_contig30537:394..1295 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score125.9
Seed ortholog evalue1.1e-26
Seed eggNOG ortholog2880.D8LG72
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Glycosyl transferase family 2
EggNOG OGs2CXN1@1,2RYKE@2759
Ec32 ortholog descriptionNucleotide-diphospho-sugar transferases
Ec32 orthologEc-17_003990.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size330
Cds size315
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig30537.8271.1prot_H-paniculata_contig30537.8271.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig30537 409..1295 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929938.1066294-UTR-H-paniculata_contig30537:393..4081622929938.1066294-UTR-H-paniculata_contig30537:393..408Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig30537 394..408 +
1691481077.986203-UTR-H-paniculata_contig30537:393..4081691481077.986203-UTR-H-paniculata_contig30537:393..408Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig30537 394..408 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929938.1175125-CDS-H-paniculata_contig30537:408..5051622929938.1175125-CDS-H-paniculata_contig30537:408..505Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig30537 409..505 +
1691481077.9985933-CDS-H-paniculata_contig30537:408..5051691481077.9985933-CDS-H-paniculata_contig30537:408..505Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig30537 409..505 +
1622929938.1315596-CDS-H-paniculata_contig30537:1077..12951622929938.1315596-CDS-H-paniculata_contig30537:1077..1295Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig30537 1078..1295 +
1691481078.0120978-CDS-H-paniculata_contig30537:1077..12951691481078.0120978-CDS-H-paniculata_contig30537:1077..1295Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig30537 1078..1295 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig30537.8271.1

>prot_H-paniculata_contig30537.8271.1 ID=prot_H-paniculata_contig30537.8271.1|Name=mRNA_H-paniculata_contig30537.8271.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=105bp
MCGVLAQLAFEQGARYTVLFGDDVRLVSEKWTEEIRDAFQSIHRTAIPDA
CGVSAPVGFGVVSFTELNSPGFPAFPVLHRNHLAIFPEVFPEAFINQDAD
PWIFQ
back to top

mRNA from alignment at H-paniculata_contig30537:394..1295+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig30537.8271.1 ID=mRNA_H-paniculata_contig30537.8271.1|Name=mRNA_H-paniculata_contig30537.8271.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=902bp|location=Sequence derived from alignment at H-paniculata_contig30537:394..1295+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGGACAGGTGTGCCATGTGTGGAGTGTTAGCACAGCTAGCCTTCGAGCA AGGGGCGAGGTACACCGTTCTCTTTGGTGACGATGTGCGCCTTGTCTCGG AAAAATGGACAGGTAGATGTCATTTTTGAAAGACAGTGCTGGTTTGTCAA CAGCATCCCGTTGACCGCGATTGGGCTATAACTAGGTGGTGTAGTGGATG GTTATGCCTTATTGTTTGAATTTATATAATTGCGCAGAGAATATGCAGTT CATGTCTCTTAGTCAGGCAGAGTAGTGATAAGAGGCTGAACCTAACTTTG CCCCGAACGTTTAGTCTCTAGAACTGCCCCTCATCTGAAAAGAAATTAGA TCATTATAGACCAGTGGTGAGGGTGAAACTCTACTTCATACATCTCTATT GTGGGCACAAGTTACGATGACTTCTGCTGTATGCGTGAAACGATGGCTAC GTCAAATGCGATCGCTTGACTATCCCAGATAATAAGTGTGGTGGCGGAAT GACACCCACCCGCAAGTACGCACATGTCCTGATAGTATCAGCTGTTCTTC GTCAGCACCCACAACCTGTCGGTGGTAGTACGTCAAGCTCACCTGTCAGC TCTAATACATATGCTGCCGAAACATGCCCACTGTCGCATCCACCTAGAAT CCCCTACCCCCTTCTCCGCTGATGCACTGTGCAGAAGAGATAAGAGACGC ATTTCAGTCCATTCACCGGACTGCGATTCCTGATGCTTGTGGCGTTTCCG CTCCCGTCGGATTCGGAGTTGTATCATTTACCGAGCTTAACTCCCCCGGG TTCCCGGCCTTTCCGGTCCTCCACCGCAACCACCTCGCCATTTTCCCGGA GGTTTTCCCGGAGGCCTTCATTAACCAAGATGCGGATCCCTGGATATTCC AG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig30537:394..1295+

>mRNA_H-paniculata_contig30537.8271.1 ID=mRNA_H-paniculata_contig30537.8271.1|Name=mRNA_H-paniculata_contig30537.8271.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=630bp|location=Sequence derived from alignment at H-paniculata_contig30537:394..1295+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTGTGGAGTGTTAGCACAGCTAGCCTTCGAGCAAGGGGCGAGGTACAC
CGTTCTCTTTGGTGACGATGTGCGCCTTGTCTCGGAAAAATGGACAGATG
TGTGGAGTGTTAGCACAGCTAGCCTTCGAGCAAGGGGCGAGGTACACCGT
TCTCTTTGGTGACGATGTGCGCCTTGTCTCGGAAAAATGGACAGAAGAGA
TAAGAGACGCATTTCAGTCCATTCACCGGACTGCGATTCCTGATGCTTGT
GGCGTTTCCGCTCCCGTCGGATTCGGAGTTGTATCATTTACCGAGCTTAA
CTCCCCCGGGTTCCCGGCCTTTCCGGTCCTCCACCGCAACCACCTCGCCA
TTTTCCCGGAGGTTTTCCCGGAGGCCTTCATTAACCAAGATGCGGATCCC
TGGATATTCCAGAAGAGATAAGAGACGCATTTCAGTCCATTCACCGGACT
GCGATTCCTGATGCTTGTGGCGTTTCCGCTCCCGTCGGATTCGGAGTTGT
ATCATTTACCGAGCTTAACTCCCCCGGGTTCCCGGCCTTTCCGGTCCTCC
ACCGCAACCACCTCGCCATTTTCCCGGAGGTTTTCCCGGAGGCCTTCATT
AACCAAGATGCGGATCCCTGGATATTCCAG
back to top