mRNA_H-paniculata_contig305.8261.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig305.8261.1
Unique NamemRNA_H-paniculata_contig305.8261.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig305.8261.1 vs. uniprot
Match: D7FJ18_ECTSI (CCR4-NOT transcription complex subunit 11 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJ18_ECTSI)

HSP 1 Score: 761 bits (1966), Expect = 1.830e-272
Identity = 387/422 (91.71%), Postives = 398/422 (94.31%), Query Frame = 2
Query:   20 MLDAQELTPLLQLLNDEDDILENVAQKFQRIFTRNDHFKVGCALCVLLCDNLLTRTQRVVSFSILCDLYRNEANGTNPFLPFFLEAIEKGTDPVERQYLVHLLCSPPTNRNSARKNALQVIAEYERTPAEAVEVPDLSALRQLYSEKNPAVPTLSRAAGVRPVLQDPSVEGEEVGLWLPPRPEDQAGRARGGVALRGGIAGGRREPEAPIQPLTLDEMRLGEGGDGGSLSLASFEPEFMRPVPPMLPIADSEVIWLNPDYAPRLLWDTSMGQDSSKGAEVRDVMAKAFKGPLLPAQQQQVLNELQNDARLVYHCGLTPSKLPDLVENNPMIAIECLLKLMSSSQITEYLSALVNMDMSLHSMEVVNRLTTSVDLPTEFIHLYISNCISSCENIKDKYMQNRLVRLVCVFLQSLIRNKIINVE 1285
            MLD+QELTPLLQLLNDEDDILENVAQKF R FTRNDHFKVGCALC+LLCDNLLT TQRVVSFSILCDLYRN+ANGTNPFLPFFLEAIEKGTDPVERQYLVHLLCSPPTNRNSARKNALQVIAEYE TPAEAVEVPDLSALRQLYSEKNPAVP+L R AGVRPVL DPS    EVG WLPPRPE+Q GRA GG ALRGG+ GG+RE   PIQPLTLD+MRL +GG GGSLSLASFEPEFMRPVPPMLPIADSEV+WLNPDYAPRLLWDTSMGQDSSKGAEVRDVMAKAFKGPLLP QQQQVL+ELQ DARLVYHCGLTP KLPDLVENNPMIAIECLLKLMSSSQITEYLSALVNMDMSLHSMEVVNRLTTSVDLPTEFIHLYISNCISSCENIKDKYMQNRLVRLVCVFLQSLIRNKIINVE
Sbjct:    1 MLDSQELTPLLQLLNDEDDILENVAQKFHRTFTRNDHFKVGCALCILLCDNLLTHTQRVVSFSILCDLYRNDANGTNPFLPFFLEAIEKGTDPVERQYLVHLLCSPPTNRNSARKNALQVIAEYEGTPAEAVEVPDLSALRQLYSEKNPAVPSL-RTAGVRPVLADPSESSNEVGSWLPPRPEEQVGRAPGGAALRGGV-GGKREAPTPIQPLTLDDMRLSKGGRGGSLSLASFEPEFMRPVPPMLPIADSEVMWLNPDYAPRLLWDTSMGQDSSKGAEVRDVMAKAFKGPLLPTQQQQVLSELQGDARLVYHCGLTPFKLPDLVENNPMIAIECLLKLMSSSQITEYLSALVNMDMSLHSMEVVNRLTTSVDLPTEFIHLYISNCISSCENIKDKYMQNRLVRLVCVFLQSLIRNKIINVE 420          
BLAST of mRNA_H-paniculata_contig305.8261.1 vs. uniprot
Match: A0A2D4BNE6_PYTIN (CCR4-NOT transcription complex subunit 11 n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BNE6_PYTIN)

HSP 1 Score: 483 bits (1244), Expect = 4.270e-163
Identity = 263/436 (60.32%), Postives = 322/436 (73.85%), Query Frame = 2
Query:   20 MLDAQELTPLLQLLNDEDDILENVAQKFQRIFTRNDHFKVGCALCVLLCDNLLTRTQRVVSFSILCDLYRNEANGTNPFLPFFLEAIEKGTDPVERQYLVHLLCSPPTNRNSARKNALQVIAEYERTPAEAVEVP--DLSALRQLYSEKNPAVPTLSRAAGVRPVLQDPSVEGEE-----VGLWLPPRPEDQAGRARGGVALRGGIAGGRREPEAPIQPLTLDEMRLGEGGDG-------GSLSLASFEPEFMRPVPPMLPIADSEVIWLNPDYAPRLLWDTSMGQDSSKGAEVRDVMAKAFKGPLLPAQQQQVLNELQNDARLVYHCGLTPSKLPDLVENNPMIAIECLLKLMSSSQITEYLSALVNMDMSLHSMEVVNRLTTSVDLPTEFIHLYISNCISSCENIKDKYMQNRLVRLVCVFLQSLIRNKIINVE 1285
            ML+A+EL PLL +LN++D  LE V+  F R FT+NDHFKVGC +C+LL DNLLT +QR+V FSILCDLYRNEA  TNPFLP FLEA+EKGTDP E ++LVHLL S P+NR +++++A  +++E     A + ++P  DL ALR++Y EK P VP L R AG+R V+ D  ++ +E       + +PP            V +          P A  + LT++EM L     G       GSLSL  FEP+FMR  PP++    +E+IWLNPDY P LLWD +M +DSS G E+R++MA AF GP +P+QQQ+VL +L+ D +LVYHC LTP +LPDLVENNPMIAIECLLKLMSS+QITEYLSALVNMDMSLHSMEVVNRLTT+VDLPTEFIHLYISNCISSCENIKDKYMQNRLVRLVCVFLQSLIRNKIINV+
Sbjct:    1 MLEARELRPLLTILNEDDKPLEQVSSAFSRTFTKNDHFKVGCTICILLQDNLLTSSQRIVGFSILCDLYRNEAASTNPFLPVFLEALEKGTDPCETKFLVHLLSSTPSNRETSKRSAKTILSELR---ANSSQIPPFDLEALRKVYKEKTPPVPQL-RGAGIRNVVTDSELDLQEHLNTSANVHVPPNE----------VCML-------NVPCA--EELTIEEMGLSLDAAGAAGAPSAGSLSLQGFEPKFMRLPPPIMEPDMTELIWLNPDYCPTLLWDGTMFEDSSHGMELRELMAXAFVGPXIPSQQQKVLADLEADPKLVYHCSLTPQRLPDLVENNPMIAIECLLKLMSSNQITEYLSALVNMDMSLHSMEVVNRLTTAVDLPTEFIHLYISNCISSCENIKDKYMQNRLVRLVCVFLQSLIRNKIINVQ 413          
BLAST of mRNA_H-paniculata_contig305.8261.1 vs. uniprot
Match: A0A8K1CP59_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CP59_PYTOL)

HSP 1 Score: 476 bits (1225), Expect = 2.560e-160
Identity = 253/428 (59.11%), Postives = 314/428 (73.36%), Query Frame = 2
Query:   20 MLDAQELTPLLQLLNDEDDILENVAQKFQRIFTRNDHFKVGCALCVLLCDNLLTRTQRVVSFSILCDLYRNEANGTNPFLPFFLEAIEKGTDPVERQYLVHLLCSPPTNRNSARKNALQVIAEYERTPAEAVEVPDLSALRQLYSEKNPAVPTLSRAAGVRPVLQDPSVEGEE-----VGLWLPPRPEDQAGRARGGVALRGGIAGGRREPEAPIQPLTLDEMRL-GEGGDGGSLSLASFEPEFMRPVPPMLPIADSEVIWLNPDYAPRLLWDTSMGQDSSKGAEVRDVMAKAFKGPLLPAQQQQVLNELQNDARLVYHCGLTPSKLPDLVENNPMIAIECLLKLMSSSQITEYLSALVNMDMSLHSMEVVNRLTTSVDLPTEFIHLYISNCISSCENIKDKYMQNRLVRLVCVFLQSLIRNKIINVE 1285
            ML+ +EL PLL +LN+++  LE V   F R FT+NDHFKVGC +C+LL DNLLT +QR+V  SIL DLYR+E  GTNPFLP F E +EKG+D  E+++++HLL +P  NR S++K A  ++AE+    +   +V D+ AL+  Y E+ PAVP   RAAG+R V+ D  ++ +E       + +PP             AL               + L+++EM L GE G   SLSL SFEP FMR  PP++    +E+IWLNPDY P +LWD++M +DSS G E+R++MAKAF GPL+P+QQQ+VL EL+ D +LVYHC LTP +LPDLVENNPMIAIECLLKLMSS+QITEYLSALVNMDMSLHSMEVVNRLTT+VDLPTEFIHLYISNCISSCENIKDKYMQNRLVRLVCVFLQSLIRNKIINV+
Sbjct:    1 MLETRELRPLLAILNEDEKPLEQVGSSFARTFTKNDHFKVGCTICILLQDNLLTSSQRIVGLSILSDLYRSENTGTNPFLPVFFEVLEKGSDLSEKRFVLHLLSTPSANRESSKKGAKTLLAEFRANASPVAQV-DIDALKNAYKERTPAVPQF-RAAGMRNVVTDTELDLQEQLNNGANVHIPPNEVS---------ALN----------VPSFEELSIEEMGLTGENGAPASLSLLSFEPSFMRLPPPIMEPEMTELIWLNPDYCPTVLWDSTMFEDSSHGLELRELMAKAFVGPLIPSQQQKVLAELEADPKLVYHCSLTPQRLPDLVENNPMIAIECLLKLMSSNQITEYLSALVNMDMSLHSMEVVNRLTTAVDLPTEFIHLYISNCISSCENIKDKYMQNRLVRLVCVFLQSLIRNKIINVQ 407          
BLAST of mRNA_H-paniculata_contig305.8261.1 vs. uniprot
Match: K3XBZ3_GLOUD (CCR4-NOT transcription complex subunit 11 n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3XBZ3_GLOUD)

HSP 1 Score: 453 bits (1165), Expect = 2.690e-151
Identity = 252/437 (57.67%), Postives = 311/437 (71.17%), Query Frame = 2
Query:   20 MLDAQELTPLLQLLNDEDDILENVAQKFQRIFTRNDHFKVGCALCVLLCDNLLTRTQRVVSFSILCDLYRNEANGTNPFLPFFLEAIEKGTDPVERQYLVHLLCSPPTNRNSARKNALQVIAEYERTPAEAVEVP---DLSALRQLYSEKNPAVPTLSRAAGVRPVLQDPSVEGEEVGLWLPPRPEDQAGRARGGVALRGGIAGGRREPEAP-----------IQPLTLDEMRL-GEGGDGGSLSLASFEPEFMRPVPPMLPIADSEVIWLNPDYAPRLLWDTSMGQDSSKGAEVRDVMAKAFKGPLLPAQQQQVLNELQNDARLVYHCGLTPSKLPDLVENNPMIAIECLLKLMSSSQITEYLSALVNMDMSLHSMEVVNRLTTSVDLPTEFIHLYISNCISSCENIKDKYMQNRLVRLVCVFLQSLIRNKIINVE 1285
            ML+ +EL PLL +LN++D  LE V   F + +T+NDHFKVGC +C+LL DNLLT +QRVV FSIL DLYRNE+ GTNPFLP FLEA+EKG+D  E+++LV LL + P+ ++  +K A  VI E  ++P     VP   D+   R+ Y+EK PAVP   RAAGVR V+ D  ++ +E                     L  G +     P  P            + L+L+EM L  EG   G LSL SFEP+FMR  PP+L    +E+IWLNPDY P +LW+++M  DSS G E+R++M KAF+ PL+P+ Q +VL+EL+ + +LVY C LTP +LPDLVENNPMIAI+CLLKLMSS+QITEYLSALVNMDMSLHSMEVVNRLTT+VDLPTEFIHLYISNCISSCENIKDKYMQNRLVRLVCVFLQSLIRNKIINV+
Sbjct:    1 MLETRELRPLLSILNEDDKPLETVMSSFLKTYTKNDHFKVGCTICILLQDNLLTSSQRVVGFSILSDLYRNESAGTNPFLPVFLEALEKGSDISEKKFLVLLLSAAPSTKDMNKKTAKAVITELRQSP-----VPLQFDIEGFRKAYAEKTPAVPQF-RAAGVRNVVTDTELDLQE--------------------HLNNGAS-----PHVPPNEVSSLNLPCFEALSLEEMSLISEGDASGPLSLLSFEPKFMRLPPPILEPDMTELIWLNPDYCPTMLWNSTM-LDSSHGMEIRELMLKAFQTPLIPSLQAKVLDELEVNPKLVYQCSLTPQRLPDLVENNPMIAIDCLLKLMSSNQITEYLSALVNMDMSLHSMEVVNRLTTAVDLPTEFIHLYISNCISSCENIKDKYMQNRLVRLVCVFLQSLIRNKIINVQ 405          
BLAST of mRNA_H-paniculata_contig305.8261.1 vs. uniprot
Match: H3H0V6_PHYRM (CCR4-NOT transcription complex subunit 11 n=30 Tax=Peronosporaceae TaxID=4777 RepID=H3H0V6_PHYRM)

HSP 1 Score: 450 bits (1157), Expect = 8.540e-150
Identity = 248/447 (55.48%), Postives = 309/447 (69.13%), Query Frame = 2
Query:   20 MLDAQELTPLLQLLNDEDDILENVAQKFQRIFTRNDHFKVGCALCVLLCDNLLTRTQRVVSFSILCDLYRNEANGTNPFLPFFLEAIEKGTDPVERQYLVHLLCSPPTNRNSARKNALQVIAEYERTPAEAVEVPDLSALRQLYSEKNPAVPTLSRAAGVRPVLQDPSVEGEE-----VGLWLPPRPEDQAGRARGGVALRGGIAGGRREPEAPIQPLTLDEMRLGEGGDG--------------------GSLSLASFEPEFMRPVPPMLPIADSEVIWLNPDYAPRLLWDTSMGQDSSKGAEVRDVMAKAFKGPLLPAQQQQVLNELQNDARLVYHCGLTPSKLPDLVENNPMIAIECLLKLMSSSQITEYLSALVNMDMSLHSMEVVNRLTTSVDLPTEFIHLYISNCISSCENIKDKYMQNRLVRLVCVFLQSLIRNKIINVE 1285
            ML+ +EL PLL +LN++D  LE VA  F   FT+NDHFKVGC +C+LL DNLLT +QR+V FSIL DLYRNE   TNPFLP FL+A+EKG+D  E++ +VHLL +    R+S++K A Q++AE+   P++ V+  D+ A+R  Y E+ P+VP   RAAG+R V+ D   + +E       L +PP                              + L+L+EM L    +                     GSLSL SFEP FMR  PP+L    +E+IWLNPDY P LLWD++M  DS+ G  +R++M +AF+ PL+P+ QQ+VL EL+ D +LVYHC LTP +LPDLVENNPM+AI+CLLKLMSS+QITEYLSALVNMDMSLHSMEVVNRLTT+VDLPTEFIHLYISNCISSCENIKDKYMQNRLVRLVCVFLQSLIRNKIINV+
Sbjct:    1 MLEIRELRPLLAILNEDDKPLEQVASMFLHTFTKNDHFKVGCTICILLQDNLLTSSQRIVGFSILSDLYRNEGTTTNPFLPVFLDALEKGSDLCEKKLIVHLLTATGATRDSSKKAAKQLMAEFRANPSQPVQF-DVEAMRNSYLERTPSVPQF-RAAGIRNVVTDTEFDLQEHVNNGANLQVPPNEVSSLNLPC-------------------FEALSLEEMSLLSDAEASXXXXXXXXXXXXXXXXXXAGSLSLLSFEPTFMRLPPPILEPDMTELIWLNPDYCPTLLWDSTM-LDSTHGIALRELMLRAFQKPLVPSLQQKVLAELEADPKLVYHCSLTPQRLPDLVENNPMLAIDCLLKLMSSNQITEYLSALVNMDMSLHSMEVVNRLTTAVDLPTEFIHLYISNCISSCENIKDKYMQNRLVRLVCVFLQSLIRNKIINVQ 425          
BLAST of mRNA_H-paniculata_contig305.8261.1 vs. uniprot
Match: A0A484EAT0_BRELC (CCR4-NOT transcription complex subunit 11 n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EAT0_BRELC)

HSP 1 Score: 441 bits (1133), Expect = 3.290e-146
Identity = 248/446 (55.61%), Postives = 307/446 (68.83%), Query Frame = 2
Query:   20 MLDAQELTPLLQLLNDEDDILENVAQKFQRIFTRNDHFKVGCALCVLLCDNLLTRTQRVVSFSILCDLYRNEANGTNPFLPFFLEAIEKGTDPVERQYLVHLLCSPPTNRNSARKNALQVIAEYERTPAEAVEVPDLSALRQLYSEKNPAVPTLSRAAGVRPVLQDPSVEGEE-----VGLWLPPRPEDQAGRARGGVALRGGIAGGRREPEAPI-QPLTLDEMRL------GEGGDG------------GSLSLASFEPEFMRPVPPMLPIADSEVIWLNPDYAPRLLWDTSMGQDSSKGAEVRDVMAKAFKGPLLPAQQQQVLNELQNDARLVYHCGLTPSKLPDLVENNPMIAIECLLKLMSSSQITEYLSALVNMDMSLHSMEVVNRLTTSVDLPTEFIHLYISNCISSCENIKDKYMQNRLVRLVCVFLQSLIRNKIINVE 1285
            ML+ +EL PLL +LN++D  LE V   F R FT+NDHFKVGC +C+LL DNLLT +QR+VSFSILCDLYR+E   TNPFL  F++A+EKG+D  E+ ++VHLL +    R+S++K+A Q +A++   P+  + + D+ ALRQ Y E+ P VP   RAAG+R V+ D   + +E       L +PP                            P  + L+L+EM L        G  G            GSLSL SFEP+FMR  P +L    +E IWLNPDY P LLWD++M  DS+    +R++M  AF+ PL+P+ QQ+VL EL+ D +LVYHC LTP +LPDLVENNPM+AI CLLKLMSS+QITEYLSALVNMDMSLHSMEVVNRLTT+VDLPTEFIHLYISNCISSCENIKDKYMQNRLVRLVCVFLQSLIRNKIINV+
Sbjct:    1 MLEIRELRPLLAILNEDDKPLEQVTSLFLRTFTKNDHFKVGCTICILLQDNLLTSSQRIVSFSILCDLYRSEGTTTNPFLLVFVDALEKGSDLCEQNFIVHLLTTSGAPRDSSKKSAKQWMADFRTNPSPPLHI-DVEALRQNYLERTPLVPQF-RAAGIRNVVTDSEFDLQEHVNNGANLQVPPNEVSSL--------------------NLPCSEALSLEEMSLLSDADVSSGSHGTASSSAASASCTGSLSLLSFEPKFMRLPPSILEPDMTEFIWLNPDYCPTLLWDSTM-LDSTHNIALRELMTCAFQKPLVPSLQQKVLAELEADPKLVYHCSLTPQRLPDLVENNPMLAINCLLKLMSSNQITEYLSALVNMDMSLHSMEVVNRLTTAVDLPTEFIHLYISNCISSCENIKDKYMQNRLVRLVCVFLQSLIRNKIINVQ 423          
BLAST of mRNA_H-paniculata_contig305.8261.1 vs. uniprot
Match: A0A7S2RYB1_9STRA (CCR4-NOT transcription complex subunit 11 n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RYB1_9STRA)

HSP 1 Score: 426 bits (1094), Expect = 2.060e-140
Identity = 238/427 (55.74%), Postives = 303/427 (70.96%), Query Frame = 2
Query:   20 MLDAQELTPLLQLLNDEDDILENVAQKFQRIFTRNDHFKVGCALCVLLCDNLLTRTQRVVSFSILCDLYRNEANGT-NPFLPFFLEAIEKGTDPVERQYLVHLLCSPPTNRNSARK-NALQVIAEYERTPAEAVEVPDLSALRQLYSEKNPAVPTLSRAAGVRPVLQDPSVEGEEVGLWLPPRPEDQAGRARGGVALRGGIAGGRREPEA---PIQPLTLDEMRLGEGGDGGSLSLASFEPEFMRPVPPMLPIADSEVIWLNPDYAPRLLWDTSMGQDSSKGAEVRDVMAKAFKGPLLPAQQQQVLNELQNDARLVYHCGLTPSKLPDLVENNPMIAIECLLKLMSSSQITEYLSALVNMDMSLHSMEVVNRLTTSVDLPTEFIHLYISNCISSCENIKDKYMQNRLVRLVCVFLQSLIRNKIINVE 1285
            +L   EL  LL +L+ + + LE V   FQR F+RNDH+K+ CAL +LL D LLTRTQR++SF +L +L+    N   NPFLP FL  +E  +D  E+ ++  L+      R+S RK +A  ++ +  +  A   EVP+++ LRQ + + +P+ P L  A  VRPV+ DP    +E GL + P        A GG A     A     PEA   P + L+ DEMR   G +  ++ L    P F RP+PP+L + D+E++W+NPDYAPRLLWD+++ +D++KG EVR++M+KAFKGPL   +QQ VLNEL+ND RLVYHCGLTP KLP+LVENNP+IAIECLLKLMSS+Q+ EYLSALVNMDMSLHSMEVVNRLTT+VDLPTEFIHLYISNCISSCENIKDKYMQNRLVRLVCVFLQSLIR KIINV+
Sbjct:    5 LLTRAELDALLTVLSVDGNPLEAVLADFQRAFSRNDHYKLCCALNILLVDQLLTRTQRIISFFVLHELFGLAGNAAVNPFLPSFLATLEGPSDTPEQPFVAGLIGPSSAYRDSVRKKSARDLLEDLVQRKAMPAEVPNVATLRQKHLDSSPSPPGLDSAT-VRPVVHDPL---DENGLGVVP--------AAGG-AXXXXTASPSPRPEAHFAPTESLSPDEMRELLGPEAAAMGLGGLRPPFPRPMPPLLTVTDAELMWINPDYAPRLLWDSTLCRDNAKGQEVRELMSKAFKGPLKLDEQQHVLNELENDNRLVYHCGLTPQKLPELVENNPIIAIECLLKLMSSNQLNEYLSALVNMDMSLHSMEVVNRLTTAVDLPTEFIHLYISNCISSCENIKDKYMQNRLVRLVCVFLQSLIRTKIINVQ 418          
BLAST of mRNA_H-paniculata_contig305.8261.1 vs. uniprot
Match: F0W6B0_9STRA (CCR4-NOT transcription complex subunit 11 n=2 Tax=Albugo TaxID=65356 RepID=F0W6B0_9STRA)

HSP 1 Score: 427 bits (1097), Expect = 4.640e-140
Identity = 240/430 (55.81%), Postives = 298/430 (69.30%), Query Frame = 2
Query:   20 MLDAQELTPLLQLLNDEDDILENVAQKFQRIFTRNDHFKVGCALCVLLCDNLLTRTQRVVSFSILCDLYRNE-ANGTNPFLPFFLEAIEKGTDPVERQYLVHLLCSPPTNRNSARKNALQVIAEYERTPAEAVEVPDLSALRQLYSEKNPAVPTLSRAAGVRPVLQDPSVEGEEV---GLWLPPRPEDQAGRARGGVALRGGIAGGRREPEAP-IQPLTLDEM---RLGEGGDGGSLSLASFEPEFMRPVPPMLPIADSEVIWLNPDYAPRLLWDTSMGQDSSKGAEVRDVMAKAFKGPLLPAQQQQVLNELQNDARLVYHCGLTPSKLPDLVENNPMIAIECLLKLMSSSQITEYLSALVNMDMSLHSMEVVNRLTTSVDLPTEFIHLYISNCISSCENIKDKYMQNRLVRLVCVFLQSLIRNKIINVE 1285
            ML+ +EL PLL +L++ D  LE V   F + +T+NDHF++GC + +LL DNLLT  QR + FSIL DLYRNE ++  NPFLP FL A EKG D  E+++L HLL S  ++R   +K+A  V+ E+     + V   D+  L+  Y E+ PAVP L RA+G+R V+ D  ++ +E    G  L   P +        V+L             P +   T++E    +   G   G LSL SFEP FMRP P +L    SE+IWLNPDY P +LWD +M +D+S   E+RD+M+KAF  PL+P+ QQ+VL EL  D ++VYH  LTP +LPDLVENNPMIAIECLLKLMSS+QITEYLSALVNMDMSLHSMEVVNRLTT+VDLPTEFIHLYISNCISSCENIKDKYMQNRLVRLVCVFLQSLIRNKIINV+
Sbjct:   65 MLEMRELRPLLAILSESDKPLEQVTNAFLKTYTKNDHFRIGCIVSILLQDNLLTSAQRFIGFSILFDLYRNEGSHAINPFLPIFLNAYEKGNDVYEKKFLSHLLSSA-SSRELNKKSANAVLQEFRSDTTQTVHAIDVDKLQAWYQERTPAVPQL-RASGIRNVIADSELDYQEHMNNGNCLQLAPNE--------VSLA----------NIPCLDEWTMEEFSEEKDASGKTNGYLSLLSFEPPFMRPPPSVLEPEMSELIWLNPDYCPSVLWDDTMFEDASHELELRDLMSKAFLNPLIPSHQQKVLAELDADPKIVYHSALTPQRLPDLVENNPMIAIECLLKLMSSNQITEYLSALVNMDMSLHSMEVVNRLTTAVDLPTEFIHLYISNCISSCENIKDKYMQNRLVRLVCVFLQSLIRNKIINVQ 474          
BLAST of mRNA_H-paniculata_contig305.8261.1 vs. uniprot
Match: A0A836CN98_9STRA (CCR4-NOT transcription complex subunit 11 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CN98_9STRA)

HSP 1 Score: 422 bits (1086), Expect = 3.640e-139
Identity = 241/436 (55.28%), Postives = 299/436 (68.58%), Query Frame = 2
Query:   20 MLDAQELTPLLQLLNDEDDILENVAQKFQRIFTRNDHFKVGCALCVLLCDNLLTRTQRVVSFSILCDLYRNEANGTNPFLPFFLEAIEKGTDPVERQYLVHLLCSPPTN-----RNSARKNALQVIAEYERTPAEAVEVPDLSALRQLYSEKNPA-----VPTLSRAAGVRPVLQDPSVEGEEVGL----WLPPRPEDQAGRARGGVALRGGIAGGRREPEAPIQPLTLDEMRLGEGGDGGSLSLASFEPEFMRPVPPMLPIADSEVIWLNPDYAPRLLWDTSMGQDSSKGAEVRDVMAKAFKGPLLPAQQQQVLNELQNDARLVYHCGLTPSKLPDLVENNPMIAIECLLKLMSSSQITEYLSALVNMDMSLHSMEVVNRLTTSVDLPTEFIHLYISNCISSCENIKDKYMQNRLVRLVCVFLQSLIRNKIINVE 1285
            ML+ ++L  LL +L+D ++ +E VA +FQR F   D+F++GC++C+LL DNLLT  QRV +  +L    ++ ++G+NPF    L+  E+  D  ER+                 R  A   A  V+ E+E +P       D+++LR+ ++E+         P L RAAG+RPVL DP   G   G     W        AG  RG        A GRR PE P+ P   + M L EG +GGSL++  FEPE +RPVPP+LP+  SEV+WL+P+YAPR LWD S+GQDSS+GAEVR ++ +AFK PL  AQQQQVL ELQ D+RLVY CGLTP KLP LVENNPMIA+ECL +LMSSSQITE+LSALVNMDMSLHSMEVVNRLTTSVDLPTEFIHLYISNCISSCENI+DKYMQNRLVRLVCVFLQSLIRNKIINV+
Sbjct:    1 MLEPRQLDDLLTVLSDNEEAVETVAGRFQRAFAATDYFRIGCSVCMLLADNLLTSAQRVAAIILLWSWGKDGSSGSNPFHGTLLQIAEETADARERRLXXXXXXXXXXXXXXXXRAWALLPAAAVLGEFE-SPQSEEGASDVTSLRRAHAERERGGAGVRAPGL-RAAGLRPVLADPCEGGRTWGTGGSAWF-------AGGPRGAGKRP---AAGRRAPETPLPP---EAMALMEGPEGGSLTMEGFEPEIIRPVPPLLPVEASEVMWLHPEYAPRFLWDASLGQDSSRGAEVRQLVGRAFKAPLPQAQQQQVLAELQADSRLVYLCGLTPQKLPALVENNPMIAVECLQRLMSSSQITEHLSALVNMDMSLHSMEVVNRLTTSVDLPTEFIHLYISNCISSCENIRDKYMQNRLVRLVCVFLQSLIRNKIINVQ 421          
BLAST of mRNA_H-paniculata_contig305.8261.1 vs. uniprot
Match: A0A067CRR8_SAPPC (CCR4-NOT transcription complex subunit 11 n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CRR8_SAPPC)

HSP 1 Score: 409 bits (1050), Expect = 5.000e-134
Identity = 238/429 (55.48%), Postives = 300/429 (69.93%), Query Frame = 2
Query:   20 MLDAQELTPLLQLLNDEDDILENVAQKFQRIFTRNDHFKVGCALCVLLCDNLLTRTQRVVSFSILCDLYRNEANGTNPFLPFFLEAIEKGT-DPVERQYLVHLLC---SPPTNRNSARKNALQVIAEYERTPAEAVEVPDLSALRQLYSEKNPAVPTLSRAAGVRPVLQDPSVEGEEVGLW-LPPRPEDQAGRARGGVALRGGIAGGRREPEAPIQPLTLDEMRLGEGGDGGSLSLASFEPEFMRPVPPMLPIADSEVIWLNPDYAPRLLWDTSMGQDSSK--GAEVRDVMAKAFKGPLLPAQQQQVLNELQNDARLVYHCGLTPSKLPDLVENNPMIAIECLLKLMSSSQITEYLSALVNMDMSLHSMEVVNRLTTSVDLPTEFIHLYISNCISSCENIKDKYMQNRLVRLVCVFLQSLIRNKIINVE 1285
            ML+A+E+ PLL LL++ED  +E V   F R FT+NDHFKVGC +C++L DN+LT  QRVV FSIL +++RNE N TNPF P  +EA+E    DP E++YL+HLL    +P +  +    NA Q++  + R   +   + +L A +QLY ++ P VP  S + G+R VL   ++E +E G + L   P D              IA    + E     LT D++ L       + +L S  P F+RP P +L    SE +WL+PDY P LLWDT M +D+    G E+RD+MAKAF GPL+P+QQQ+VL +L+ D +LVY C LTP++LPDLVENNPMIAIECLLKLM+S+QITEYLSALVNMDMSLHSMEVVNRLTT+VDLPTEFIHLYISNCISSCENIKDKYMQNRLVRLVCVFLQSLIRNKIINV+
Sbjct:    1 MLEAREMGPLLALLSEEDKSVEVVVSMFLRSFTKNDHFKVGCMVCLMLADNVLTSNQRVVGFSILSEVFRNETN-TNPFFPSLVEALEAPHGDPAEKRYLIHLLARMSAPGSEPSKKNLNAKQLLQHF-RNETKVASL-NLDAEKQLYFDRTPRVPE-SLSQGIRGVLPYSALEFQEHGNYNLLLAPAD--------------IAAMTLDDEPT---LTADDLNL------ETCTLQSVNPVFVRPAPTILEPEISEYMWLDPDYCPTLLWDTGMYEDADVDCGRELRDLMAKAFVGPLVPSQQQKVLADLEADPKLVYACQLTPARLPDLVENNPMIAIECLLKLMTSNQITEYLSALVNMDMSLHSMEVVNRLTTAVDLPTEFIHLYISNCISSCENIKDKYMQNRLVRLVCVFLQSLIRNKIINVQ 402          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig305.8261.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJ18_ECTSI1.830e-27291.71CCR4-NOT transcription complex subunit 11 n=2 Tax=... [more]
A0A2D4BNE6_PYTIN4.270e-16360.32CCR4-NOT transcription complex subunit 11 n=1 Tax=... [more]
A0A8K1CP59_PYTOL2.560e-16059.11Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
K3XBZ3_GLOUD2.690e-15157.67CCR4-NOT transcription complex subunit 11 n=1 Tax=... [more]
H3H0V6_PHYRM8.540e-15055.48CCR4-NOT transcription complex subunit 11 n=30 Tax... [more]
A0A484EAT0_BRELC3.290e-14655.61CCR4-NOT transcription complex subunit 11 n=1 Tax=... [more]
A0A7S2RYB1_9STRA2.060e-14055.74CCR4-NOT transcription complex subunit 11 n=1 Tax=... [more]
F0W6B0_9STRA4.640e-14055.81CCR4-NOT transcription complex subunit 11 n=2 Tax=... [more]
A0A836CN98_9STRA3.640e-13955.28CCR4-NOT transcription complex subunit 11 n=1 Tax=... [more]
A0A067CRR8_SAPPC5.000e-13455.48CCR4-NOT transcription complex subunit 11 n=3 Tax=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig305contigH-paniculata_contig305:16990..24746 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score765.0
Seed ortholog evalue2.1e-218
Seed eggNOG ortholog2880.D7FJ18
Hectar predicted targeting categoryother localisation
EggNOG free text desc.gene silencing by RNA
EggNOG OGsCOG3823@1,KOG4508@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-07_004770.1
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons10
Model size1929
Cds size1425
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig305.8261.1prot_H-paniculata_contig305.8261.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig305 17009..24261 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929935.5271652-UTR-H-paniculata_contig305:16989..170081622929935.5271652-UTR-H-paniculata_contig305:16989..17008Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig305 16990..17008 +
1691481076.797283-UTR-H-paniculata_contig305:16989..170081691481076.797283-UTR-H-paniculata_contig305:16989..17008Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig305 16990..17008 +
1622929935.6919825-UTR-H-paniculata_contig305:24261..247461622929935.6919825-UTR-H-paniculata_contig305:24261..24746Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig305 24262..24746 +
1691481076.886736-UTR-H-paniculata_contig305:24261..247461691481076.886736-UTR-H-paniculata_contig305:24261..24746Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig305 24262..24746 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929935.543656-CDS-H-paniculata_contig305:17008..170531622929935.543656-CDS-H-paniculata_contig305:17008..17053Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig305 17009..17053 +
1691481076.8065677-CDS-H-paniculata_contig305:17008..170531691481076.8065677-CDS-H-paniculata_contig305:17008..17053Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig305 17009..17053 +
1622929935.556954-CDS-H-paniculata_contig305:17861..179871622929935.556954-CDS-H-paniculata_contig305:17861..17987Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig305 17862..17987 +
1691481076.8147986-CDS-H-paniculata_contig305:17861..179871691481076.8147986-CDS-H-paniculata_contig305:17861..17987Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig305 17862..17987 +
1622929935.569886-CDS-H-paniculata_contig305:18754..189161622929935.569886-CDS-H-paniculata_contig305:18754..18916Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig305 18755..18916 +
1691481076.8224063-CDS-H-paniculata_contig305:18754..189161691481076.8224063-CDS-H-paniculata_contig305:18754..18916Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig305 18755..18916 +
1622929935.5814264-CDS-H-paniculata_contig305:20071..202021622929935.5814264-CDS-H-paniculata_contig305:20071..20202Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig305 20072..20202 +
1691481076.8298225-CDS-H-paniculata_contig305:20071..202021691481076.8298225-CDS-H-paniculata_contig305:20071..20202Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig305 20072..20202 +
1622929935.5934296-CDS-H-paniculata_contig305:20471..206401622929935.5934296-CDS-H-paniculata_contig305:20471..20640Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig305 20472..20640 +
1691481076.8374403-CDS-H-paniculata_contig305:20471..206401691481076.8374403-CDS-H-paniculata_contig305:20471..20640Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig305 20472..20640 +
1622929935.6056433-CDS-H-paniculata_contig305:21020..211431622929935.6056433-CDS-H-paniculata_contig305:21020..21143Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig305 21021..21143 +
1691481076.8450992-CDS-H-paniculata_contig305:21020..211431691481076.8450992-CDS-H-paniculata_contig305:21020..21143Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig305 21021..21143 +
1622929935.6217535-CDS-H-paniculata_contig305:21462..215731622929935.6217535-CDS-H-paniculata_contig305:21462..21573Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig305 21463..21573 +
1691481076.8528206-CDS-H-paniculata_contig305:21462..215731691481076.8528206-CDS-H-paniculata_contig305:21462..21573Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig305 21463..21573 +
1622929935.6358047-CDS-H-paniculata_contig305:21845..220671622929935.6358047-CDS-H-paniculata_contig305:21845..22067Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig305 21846..22067 +
1691481076.860401-CDS-H-paniculata_contig305:21845..220671691481076.860401-CDS-H-paniculata_contig305:21845..22067Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig305 21846..22067 +
1622929935.6507893-CDS-H-paniculata_contig305:22466..226431622929935.6507893-CDS-H-paniculata_contig305:22466..22643Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig305 22467..22643 +
1691481076.8679888-CDS-H-paniculata_contig305:22466..226431691481076.8679888-CDS-H-paniculata_contig305:22466..22643Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig305 22467..22643 +
1622929935.6721501-CDS-H-paniculata_contig305:24102..242611622929935.6721501-CDS-H-paniculata_contig305:24102..24261Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig305 24103..24261 +
1691481076.8781383-CDS-H-paniculata_contig305:24102..242611691481076.8781383-CDS-H-paniculata_contig305:24102..24261Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig305 24103..24261 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig305.8261.1

>prot_H-paniculata_contig305.8261.1 ID=prot_H-paniculata_contig305.8261.1|Name=mRNA_H-paniculata_contig305.8261.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=475bp
MLDAQELTPLLQLLNDEDDILENVAQKFQRIFTRNDHFKVGCALCVLLCD
NLLTRTQRVVSFSILCDLYRNEANGTNPFLPFFLEAIEKGTDPVERQYLV
HLLCSPPTNRNSARKNALQVIAEYERTPAEAVEVPDLSALRQLYSEKNPA
VPTLSRAAGVRPVLQDPSVEGEEVGLWLPPRPEDQAGRARGGVALRGGIA
GGRREPEAPIQPLTLDEMRLGEGGDGGSLSLASFEPEFMRPVPPMLPIAD
SEVIWLNPDYAPRLLWDTSMGQDSSKGAEVRDVMAKAFKGPLLPAQQQQV
LNELQNDARLVYHCGLTPSKLPDLVENNPMIAIECLLKLMSSSQITEYLS
ALVNMDMSLHSMEVVNRLTTSVDLPTEFIHLYISNCISSCENIKDKYMQN
RLVRLVCVFLQSLIRNKIINVERRELPRDCRRTSHSIKFRHRPCRCIHIF
PSSPSNPGLPFRPAPPCKSSIKPH*
back to top

mRNA from alignment at H-paniculata_contig305:16990..24746+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig305.8261.1 ID=mRNA_H-paniculata_contig305.8261.1|Name=mRNA_H-paniculata_contig305.8261.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=7757bp|location=Sequence derived from alignment at H-paniculata_contig305:16990..24746+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGAGAGGCGACAAGCTGTTATGCTGGACGCTCAGGAGTTAACGCCCTTGC TTCAGCTTCTCAATGTGAGTTGACTACCTCCACTCTGTCTTCGGTTACCC TGTGCTGAATCGAAGCCTCCGCAATGAAATACACTTGGTTATGAAATGAT AAGAGAATGCAGTAAATTCAGTACAGTTCTTTTAGTATATGCAGTCAGTA CGATGGGTTGCCTCTCTTCGATACTCGATGCTTGTTCATTTTAGTCACTA ACAGTTAAAGAGAGTTCATATGCTTTTATCATACCCCCGCGTCCGTCGCT CAACCAACCTCTACTCCTCTACAGTAAATCGACAGCTCCAACTCTGAGAG ACGCTGGGCTAGCATAGTTGTAGAGTACAAGGACAAAATTTACCGCTGAA GTCTGGTATTCATATTTAACGGACGAATTGACTGCATGGACGGCTTATGG CTTGATGGAAACGAACTTACTGTTTAGCGCGGCGCAAAATTGGCTTGCCC AACCCTGTGCCAACCACTCGTGTTCGGTTGGACAGCAGAAAAGATTTCCC TGTTCCTACCATTGTTTCGGAATATTGTACTACTAACTTCAGTCTCTCTA GAACTGTACGGTATGTTGACTTGCCTTGTCGGTCTGATGATGCTATATAT CGTTGTACCTGTCTACGGTTTGCCTGCTGGATATCTTTACACCATGTAAT TGCAACTACCGGCGACTGATGATGCTGTGTCTTTCGCGAACTGTAATTTG CAGGTTAGCTGTAGCCATTACAGACACCCCGTTGTACCACCGTAGTGGTG TAGTGTAGAGTACCTGTAGTATCCCAGTTGTTTTGACTCTCTTCCCTTGG TCGCGATTATGGACATGAATAGGACGAGGATGACATTCTCGAGAACGTAG CCCAGAAATTTCAGAGGATATTCACAAGGAACGACCACTTCAAGGTGGGC TGCGCCCTGTGCGTCCTGCTCTGCGACAACTTACTCACTCGGACACAGGT GCGTGCAGAATTATCTTGCCACAGGAATAGAAGCACAAATAGGATTCAGC GCTGCTCGTAAATACTATTTTCCTTGTGTTTTCATGTTGATGTGAAACGA GCGATGAGATCTAATAAGCCAAGTCGGAAGGGAGGGACACCAGAGCAATC TCGTTACAAAATCCAACCATCGTGTGTTTTTTAACGCCTTTACATCAGAA GCTGTTTTGGAACAAAAAGAGTTGTCCATAGACATTGAGCTCTTCGGTTG TTCTGAGCAGATTCATGGTTTCTACCTGATTATCTCCATGTACTATCTTT AGTGAACGAACTGGCTGTCTGAACAGCGATGGCTCACTACTCCTATGATG ATGTCGTAGGCGCCGATTTCCCCTGTTTTTTGAGAGTGGGATTGGGCAAT GACTACATAGATAAAGATTACATGGGCACCGTCGTTAGAGGATCTATTAT TCTGTCGTATGGTTTATTACAGCAGTAGTTTGTGAGGACGCTCCCAAATG CCTCGCTACCGAGGTCCAATGTATTAATTTCAACCTGTTGGATCGGGAGT CTAACACGTTTCTGTTCGACGTTCAATCTTTGCGTGGATGCTCCCAATAG GCTGATATGATGACCTGCCCATTTGATCTAAACGACCTAGTCAGTGTAAG AGTACCTGATACTTGTGGCTACGGTACGTGTGTCTGGTAGACTCATTGGG GAAATTCGAGCCCACAACTCCTCATGACCCACGTTACCGACCCCTCCTCC TTTTGCCAATTTCAGCGAGTGGTATCTTTTTCCATCTTATGTGACCTCTA CCGCAATGAGGCAAACGGAACAAATCCATTTTTGCCCTTCTTCCTTGAGG CGATCGAGAAAGGGACCGATCCTGTGGAGAGGCAGTATCTCGTCCACCTC CTTTGTTCTCCTCCCACCAACAGGAATGTGAGTATCACGGTACCGCTTGA TTAGGCCAGAAGAGACCGCCTATACCGGACAACGATAGTATATGTAGGCT CGTACAGAGACCACCGGAGGTGAGAGTTGTGATTGTGATGGATCGCCGAC GCGCTCTGTCTCAACTTCGTACAAGTATGCTTGGTTCAAGGTTTTTTAGT ATGACGTTAAAATGACAAGAACAAGAGTAGTGCACTAAGAGTGAATTTAC CGTGGCGAACCCTGCCCTAAACTCGATCAGTGAGGCTGTCGTTAAAAATA AAAACAAAAACAAGAAAAACAATTCGTATATTCACCACGTCAATGAATAT GCACCAGGTGCCATGAGATGACTTGGAAGTGACCGGGTCATTCGCATATA AATGTAGATAATGATCTTACGTCTGCGTAAACCAAAGGATTAATCAATTT ACAAGCCTCGAATGTAGAGTCGATTCTTGGTGTGACTGACCATCGGGTTC GCGAAAGGTAGTTTCGCGTCTTCAAGCGGAACTTTCACGAAAAACTGGAG CAATTGACACGAACTGGATCTCGGCAGCATGGTGCACGCGTAGTACTTTG TGGTACATTTTACTCCACTTTTTGATGATGTAGTAGTAATACACACTTGG CTTACCACATAGCCAAAGGTTTGATGCGAGTTATTTAGCATCGAAGGGAA GCACTTCCCTCATAGCTCTGTGACTTTCGCAACCAGTTTCTCTCTTGAGC TCTATAGGTGCCGCCTGAACTACACGCGGTCGGGGCCGGTATGTATGCCT GGCTCGATTTTTTGCTTGGCTGGGCAAGCACTGTTTACGCAGGATAATAA ACTGACCTCGTTCTCGATAGCTTCAGCGGATCTGGGCTACCAACAGCAAA TGATGTGTTCATGTCTCCTGGGAAAACCCCCCAGAAGAAGCCTATTAGTT TTGGGGGGGGGGGGCGGAGTGTACTAATTTTCAGCATGTCGTAGTTATTA GACTTTTGACCACGCGTCCTCAGGAATATGTACAGTACGGAGCTTTTTTC CTCCTAGAGCGGTTTCCGATGGCCAATCGCTCTTTTCGAGGGGCGAGAGA ATTTCCTAGCGTTCTTTTCCATGGTGATATAACCTGTTCTGATTTCCGGT TCTCCTGCTTGTGCTACTTGTATTTGGTGCAGTCCGCGCGAAAAAATGCC CTACAAGTGATTGCGGAGTACGAACGCACTCCAGCGGAAGCTGTTGAGGT ACCGGATCTGTCGGCCTTACGGCAGCTCTATAGCGAGAAGAATCCGGCAG TACCTACTCTCAGGTGCTGTAATCGAACCGCGCGTTCCTTGCTGCTATAT GGTAAGGGACATATTTGACGTCCCGAAGTAGCAAACTGGGTGTGTTACCC GCATTACACGCCGGGCTATCCATCCCCACCCTCACTTGAGTGATTTTGTT ACTATATATTCGTTCATATCATGTTTTAACGGATTCCTTACTGAAGAGAC GCCACTCGTCAACTGAGTAGCTAGCTCCCCTGCTGATGCTGTAACACGTT CCTGCTGCGTGCTCTTCGAAATCCTCATTAAGCAGGGCAGCGGGTGTGCG ACCAGTGCTGCAAGATCCGAGCGTAGAAGGCGAAGAGGTTGGATTGTGGC TACCGCCAAGGCCGGAAGATCAAGCAGGTCGCGCGCGGGGAGGAGTGGCG TTGCGGGGAGGTATTGCAGGGGGGCGACGGGAACCCGAAGCGCCGATTCA GGTGTAGTGTGTGACTCCTTCCATGCCACGTAACTTTTGTCAATTTCAGC TTTGAGCGAAGTCACGACCACATCCTATCTGGTAGTCTGCAAGCAAAGAA CGCGCGGTGCACAAGGATAAGATCATCGGGTTTTCCCGTGTTGTATGTTC GAGGTGGCAACGACGAGCTATTGTTTTGGTTTGTATTGCTTTTAACAGCA CCGAAGTTGTTAACGTCCTCTGGATAATGTTTTCTTGGTGAGGTGATCTG CTGACTTGGTCCAGCCATGTGCGTGAGAAGAGGACCTTGCCACTCGTCCC GGGGAACATCAAAAACTATTTATGTAATATGATCGACTTTCGTTTTCGGG TATCTCCGTGTGCTTTGCTTAAACCCGACAGCCATTGACACTGGACGAGA TGCGGCTTGGTGAGGGAGGCGATGGGGGTTCTTTATCGTTGGCTAGCTTC GAGCCGGAGTTTATGCGTCCGGTTCCACCAATGCTTCCTATTGCGGACTC AGAGGTATACTAGCCAGGGGCCCTTCCCCCTCACGTTTGTTGTCGACATT TTCTCATGTATATGGTCGCTCAAGACGCTTGGCGTGAGCCTGTGTTTGTG GCGATACCAACCTCTCACATTTGTAGCTTCGCACTCACGCTGACCTGTTC AAACCAGGAACTGCAACAACAATCAGCGGCCACGGGCGCACACTTTCGCC TTGACGCTTCAGAAGGAAGTGTAATAACGGGGAGATGGGTCTGCTCCATC AAGAACCCTTAATCCGAATTTTTAGTGCGTAACCACATCACGTAAACCTC ATGGACTGATACAATATATGCAGGTGATTTGGCTCAACCCAGATTACGCT CCCCGGCTGTTATGGGACACGAGCATGGGACAGGATAGTTCGAAGGGAGC AGAAGTGCGAGATGTGATGGCCAAGGCGTTCAAAGTAAGAGATGACGTTG AAAAAGAGTTTCTAGTCCTCCTTGCAACTTTCACGAAGGTTTAGCTTCGG AACCTGAACCTGGTTCAGCTGAAGTGGACTGTGGACTTCTTGAAGTGGTC ATATTGTGAGACCGTGTTTTGTACTTGAGCAGGAGGGTACTGGTTCAGTG TATTTCATCCCTAGAACCGAGATTTGACATAAGTGTTCTTCGCGATGTGC GTCATAGCTGATGAAAGTAACCACATGGTCCATTTGATCTGTTTTTGTCG CCGCAGGGACCGCTGCTTCCAGCTCAGCAGCAGCAGGTACTGAACGAGCT TCAGAACGATGCCCGACTCGTATATCATTGCGGCTTGACACCGTCCAAAC TACCAGATTTGGTGGAAAACAATCCAATGATCGCCATCGAGTGCTTGCTC AAGCTCATGTCGTCCAGCCAAATCACCGAGTACCTGAGCGCGCTTGTGAA CATGGACATGTCGCTACACTCAATGGAGGTGAGCGGAGTGATACGCCTGG GGATGATGATGTGGTCGTCGGGTGGGACATATTGCATGGAGCTCTCTAAA GGTAAAACGGCGGCATTGGCCGGGGTCGGTGAACGATATCGGTGGCGTCC TCTCAGGAAGCAAGCTCGCGCTTCTTGACAGGGGAGAGGGGGCAATGGTT TAGTGTATCTACGTGTCGCGATCGTTGAGTGACGACCTTTGTTGTGCGAT TTGGCAGTTTTGGGAGATATCAATGGTATTGGGTCGATGTGAGTTCGAGA ATAATTGCTTGATGCTTTGGGGTGTATTACCTCTCCTCCTCCTCCTCCTC CTCCTCCTCCTCCTCCTCCTCCTCCTGACGATTTATGTTGCTTTTGCGTA ATCGTATCGGCTTCACCGCTCTCCCAGGTGGTGAATCGTCTGACCACAAG TGTGGATCTGCCGACCGAGTTCATTCACCTGTACATATCCAACTGTATCT CCAGCTGCGAAAACATCAAGGACAAGTATATGCAAAACCGATTGGTTCGG CTGGTCTGTGTATTCTTGCAGTCCCTGATAAGGAATAAGATCATCAATGT CGAGGTGAGCTTCGCGTTTGCTGGAGCTTGTAGGCTTGAACCTAGCCTGA ACCTCGTTGACTATCGCAAGCATGCACTTGAGGCGCCCCACGTCAATATC CGCACGGTTGGTGCAATCACGGCGTAACCCCAAGGTCTGTTGAATTATTA CGCGAGCTTTTGCACAAAGAAAATATCGGGGTCAAATGCTGGAGTCCTTC CGCTAGAGCACTACTGCAACAGCGGCCGCGGTGTCAAGTGTGTCGCTTGA GGACAGATATACTTACAAGATTCCTAGCCCTGTGGTCTTGTGAAAAAGAA ACGACCACGCCCACACTTTTTGGGTGCAAATTATGGAGAAGCGAGGAAAC CCTGAAAAGGTGTTCTTCACAAGAAACAACGAGTTCACGATGCACTCCTC CTCTCCGTTTTGCTCGTGCTGTGGATATATGCCGCAGGATCTTTTCATCG AGGTCCAGGCTTTCTGTATCGAGTTTTCCAGGATCAGGGAAGCTGCGGGT CTGTTCCGTCTTCTCAAGACTCTAGAATAGGATGTTGCAGGATATTGTAG ACGACCGTACCCTAGCTGTGACTTGACTAGCAGAGAACGGTAATTTAAGG AGGATCATCGACGTAAACAAGACCTGTTGCCGCTACACACTGACAACTAG TCTTGGGGGTGAAATCACACACAAACGACTTGTCGACATGTCGGTTCAGA ACCCGAATGCATTTCAATCTTGGCGTTCAAGCATTTCCACCGACATCAAT TTTGGTAGAACCTGGAAAACAACTACTCGAGAGTACCTATCTAGTCGCTC CTCTGACTTGCCCGGCTGAAGGTGGCGACTAAATTGAGGTGCCGTCTCGT CTATACCTTTCCTAATACTTGAGGCTTCAAACTTTCGAGATTACACCCTT GTGACGATGGAGTATACGAATCTGTTCAAACGACCAACAACACCCATTGT CAACACATCGCTGAGCTGTCAATCCTCCCCCCGCCATTGAAAAGGCGTTG AACGTTACCTATGCAAGCGCATCCATCATGTAAAATTACCTATGGGCAAC GGTGAGAGTGAGCGACCCTGGAGCTTTCAGCCTGGAACTCTAAAAGTAAG TTCAACTTGGCTCTATTTACCTCCATGGCACAAACGAAAATAAACACAAA ATCTAAGGCTTCTGAACGAGCGGTTTCTTCAGTGAATACAAGGACTTTTC CCCTATTGCAAAATATATCACCTGCTTCGTATATGGAGGATGCAATTGTA TTTTCACTCGAAAAAAATCTCAAATAATTGCAGGCTCGTGTTCGAAGAAT TTTATCAACGTAATGTTAGATGGTGTCTCCGCTATACTGCCCGCCTCCGT GTACACGTCATGTTCACAGTCTCTCTCTCTCACATATGGGGCTCTTGTTG GGCCATGAGAAGACCTTCCAATTGACCACCTCTATTGCCACTTTCCCATT TCCCTTCTGGCAGAGGCGCGAACTTCCACGAGACTGTCGGCGCACTAGTC ACTCCATAAAATTCAGGCACCGACCATGCCGGTGTATCCACATCTTCCCT TCTTCTCCTTCCAATCCCGGCCTTCCATTTCGTCCCGCCCCACCCTGCAA GTCGAGTATCAAACCACATTGATTCTCCGTCTGTGTCAAGCAAACTCTTG AGATGATCGCGCCTACCCAAGCCTCGAAGAGCCGGATACACTGGTCCAAC TACTTCTGGCGGCAAGGCTTGCCGGGAAGCTCGTCGTTTGACCTGACGCA GGGTGAGCTCAGGACATACGAACGCCGTCTGGGTGGGACCTTCGGCCGTG AAGTCCCCGTAAGCTACCTGGTGCAAGAACGGCAGGTGGTGGAACATCGA CAGCGGGTCAACTCCGTTTCAATTGTTTGTTCTTTCTCATAGTGTGTGTT CCATCCTTGTATGGCATTGTATTTCAAGTCTTTTCGCTACTAAGCGATAC GGCTGGCTTAGCTCAGCGAGGGATCATTGATGTAAGTATGTTATGTGAGC CCCAAGAATTGAATTCATCAGTGAAAACGTGAAGGGTGCGGTCATATGTG ATCATAGTATCACTGCGAGGGGATGACGTATTGATGATTACTACACCATG TACGGGT
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig305:16990..24746+

>mRNA_H-paniculata_contig305.8261.1 ID=mRNA_H-paniculata_contig305.8261.1|Name=mRNA_H-paniculata_contig305.8261.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2850bp|location=Sequence derived from alignment at H-paniculata_contig305:16990..24746+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTGGACGCTCAGGAGTTAACGCCCTTGCTTCAGCTTCTCAATATGCT
GGACGCTCAGGAGTTAACGCCCTTGCTTCAGCTTCTCAATGACGAGGATG
ACATTCTCGAGAACGTAGCCCAGAAATTTCAGAGGATATTCACAAGGAAC
GACCACTTCAAGGTGGGCTGCGCCCTGTGCGTCCTGCTCTGCGACAACTT
ACTCACTCGGACACAGGACGAGGATGACATTCTCGAGAACGTAGCCCAGA
AATTTCAGAGGATATTCACAAGGAACGACCACTTCAAGGTGGGCTGCGCC
CTGTGCGTCCTGCTCTGCGACAACTTACTCACTCGGACACAGCGAGTGGT
ATCTTTTTCCATCTTATGTGACCTCTACCGCAATGAGGCAAACGGAACAA
ATCCATTTTTGCCCTTCTTCCTTGAGGCGATCGAGAAAGGGACCGATCCT
GTGGAGAGGCAGTATCTCGTCCACCTCCTTTGTTCTCCTCCCACCAACAG
GAATCGAGTGGTATCTTTTTCCATCTTATGTGACCTCTACCGCAATGAGG
CAAACGGAACAAATCCATTTTTGCCCTTCTTCCTTGAGGCGATCGAGAAA
GGGACCGATCCTGTGGAGAGGCAGTATCTCGTCCACCTCCTTTGTTCTCC
TCCCACCAACAGGAATTCCGCGCGAAAAAATGCCCTACAAGTGATTGCGG
AGTACGAACGCACTCCAGCGGAAGCTGTTGAGGTACCGGATCTGTCGGCC
TTACGGCAGCTCTATAGCGAGAAGAATCCGGCAGTACCTACTCTCAGTCC
GCGCGAAAAAATGCCCTACAAGTGATTGCGGAGTACGAACGCACTCCAGC
GGAAGCTGTTGAGGTACCGGATCTGTCGGCCTTACGGCAGCTCTATAGCG
AGAAGAATCCGGCAGTACCTACTCTCAGCAGGGCAGCGGGTGTGCGACCA
GTGCTGCAAGATCCGAGCGTAGAAGGCGAAGAGGTTGGATTGTGGCTACC
GCCAAGGCCGGAAGATCAAGCAGGTCGCGCGCGGGGAGGAGTGGCGTTGC
GGGGAGGTATTGCAGGGGGGCGACGGGAACCCGAAGCGCCGATTCAGCAG
GGCAGCGGGTGTGCGACCAGTGCTGCAAGATCCGAGCGTAGAAGGCGAAG
AGGTTGGATTGTGGCTACCGCCAAGGCCGGAAGATCAAGCAGGTCGCGCG
CGGGGAGGAGTGGCGTTGCGGGGAGGTATTGCAGGGGGGCGACGGGAACC
CGAAGCGCCGATTCAGCCATTGACACTGGACGAGATGCGGCTTGGTGAGG
GAGGCGATGGGGGTTCTTTATCGTTGGCTAGCTTCGAGCCGGAGTTTATG
CGTCCGGTTCCACCAATGCTTCCTATTGCGGACTCAGAGCCATTGACACT
GGACGAGATGCGGCTTGGTGAGGGAGGCGATGGGGGTTCTTTATCGTTGG
CTAGCTTCGAGCCGGAGTTTATGCGTCCGGTTCCACCAATGCTTCCTATT
GCGGACTCAGAGGTGATTTGGCTCAACCCAGATTACGCTCCCCGGCTGTT
ATGGGACACGAGCATGGGACAGGATAGTTCGAAGGGAGCAGAAGTGCGAG
ATGTGATGGCCAAGGCGTTCAAAGTGATTTGGCTCAACCCAGATTACGCT
CCCCGGCTGTTATGGGACACGAGCATGGGACAGGATAGTTCGAAGGGAGC
AGAAGTGCGAGATGTGATGGCCAAGGCGTTCAAAGGACCGCTGCTTCCAG
CTCAGCAGCAGCAGGTACTGAACGAGCTTCAGAACGATGCCCGACTCGTA
TATCATTGCGGCTTGACACCGTCCAAACTACCAGATTTGGTGGAAAACAA
TCCAATGATCGCCATCGAGTGCTTGCTCAAGCTCATGTCGTCCAGCCAAA
TCACCGAGTACCTGAGCGCGCTTGTGAACATGGACATGTCGCTACACTCA
ATGGAGGGACCGCTGCTTCCAGCTCAGCAGCAGCAGGTACTGAACGAGCT
TCAGAACGATGCCCGACTCGTATATCATTGCGGCTTGACACCGTCCAAAC
TACCAGATTTGGTGGAAAACAATCCAATGATCGCCATCGAGTGCTTGCTC
AAGCTCATGTCGTCCAGCCAAATCACCGAGTACCTGAGCGCGCTTGTGAA
CATGGACATGTCGCTACACTCAATGGAGGTGGTGAATCGTCTGACCACAA
GTGTGGATCTGCCGACCGAGTTCATTCACCTGTACATATCCAACTGTATC
TCCAGCTGCGAAAACATCAAGGACAAGTATATGCAAAACCGATTGGTTCG
GCTGGTCTGTGTATTCTTGCAGTCCCTGATAAGGAATAAGATCATCAATG
TCGAGGTGGTGAATCGTCTGACCACAAGTGTGGATCTGCCGACCGAGTTC
ATTCACCTGTACATATCCAACTGTATCTCCAGCTGCGAAAACATCAAGGA
CAAGTATATGCAAAACCGATTGGTTCGGCTGGTCTGTGTATTCTTGCAGT
CCCTGATAAGGAATAAGATCATCAATGTCGAGAGGCGCGAACTTCCACGA
GACTGTCGGCGCACTAGTCACTCCATAAAATTCAGGCACCGACCATGCCG
GTGTATCCACATCTTCCCTTCTTCTCCTTCCAATCCCGGCCTTCCATTTC
GTCCCGCCCCACCCTGCAAGTCGAGTATCAAACCACATTGAAGGCGCGAA
CTTCCACGAGACTGTCGGCGCACTAGTCACTCCATAAAATTCAGGCACCG
ACCATGCCGGTGTATCCACATCTTCCCTTCTTCTCCTTCCAATCCCGGCC
TTCCATTTCGTCCCGCCCCACCCTGCAAGTCGAGTATCAAACCACATTGA
back to top