mRNA_H-paniculata_contig30468.8254.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig30468.8254.1
Unique NamemRNA_H-paniculata_contig30468.8254.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig30468.8254.1 vs. uniprot
Match: A0A6H5KDZ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDZ6_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 9.140e-10
Identity = 29/63 (46.03%), Postives = 42/63 (66.67%), Query Frame = 1
Query:   25 VIIKEDNQGAEKMAHNNHSNRRTRHIDVKHHIVGNAVEAGKVDVVYAGTGEQHADVLTKALER 213
            + + EDN+GA  +  N  S+ R++HIDV+ H +    ++GK+   Y  TGEQHAD+LTKAL R
Sbjct:   68 IKVLEDNKGALALIENPFSSARSKHIDVRFHFIRELFKSGKITAEYVPTGEQHADMLTKALGR 130          
BLAST of mRNA_H-paniculata_contig30468.8254.1 vs. uniprot
Match: A0A6H5GUV6_9HEMI (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Nesidiocoris tenuis TaxID=355587 RepID=A0A6H5GUV6_9HEMI)

HSP 1 Score: 61.6 bits (148), Expect = 2.340e-9
Identity = 30/62 (48.39%), Postives = 44/62 (70.97%), Query Frame = 1
Query:   22 PVIIKEDNQGAEKMAHNNHSNRRTRHIDVKHHIVGNAVEAGKVDVVYAGTGEQHADVLTKAL 207
            PV +K DN+GA+++A N   + RT+HID++HH+V  AVE  K+ + +  T E  AD+LTKAL
Sbjct:  517 PVSLKNDNRGAQELARNPVYHSRTKHIDIRHHVVREAVEEKKIVLQHTPTEEMTADILTKAL 578          
BLAST of mRNA_H-paniculata_contig30468.8254.1 vs. uniprot
Match: A0A6H5HSM1_9HEMI (Integrase catalytic domain-containing protein n=1 Tax=Nesidiocoris tenuis TaxID=355587 RepID=A0A6H5HSM1_9HEMI)

HSP 1 Score: 60.5 bits (145), Expect = 6.060e-9
Identity = 30/62 (48.39%), Postives = 43/62 (69.35%), Query Frame = 1
Query:   22 PVIIKEDNQGAEKMAHNNHSNRRTRHIDVKHHIVGNAVEAGKVDVVYAGTGEQHADVLTKAL 207
            PV +K DN+GA+++A N   + RT+HID++HH V  AVE  K+ + +  T E  AD+LTKAL
Sbjct:  816 PVSLKNDNRGAQELARNPVYHSRTKHIDIRHHFVREAVEEKKIVLQHTPTEEMTADILTKAL 877          
BLAST of mRNA_H-paniculata_contig30468.8254.1 vs. uniprot
Match: A0A5K1JYL8_9APHY (Isocitrate lyase (ICL) (Isocitrase) (Isocitratase) (MICA) -isocitrate glyoxylate-lyase))) (Fragment) n=1 Tax=Ganoderma boninense TaxID=34458 RepID=A0A5K1JYL8_9APHY)

HSP 1 Score: 58.5 bits (140), Expect = 1.120e-8
Identity = 29/58 (50.00%), Postives = 40/58 (68.97%), Query Frame = 1
Query:   40 DNQGAEKMAHNNHSNRRTRHIDVKHHIVGNAVEAGKVDVVYAGTGEQHADVLTKALER 213
            DNQ A  +A N+  + RT+HI V+HH + + +E G++ V Y  TG+Q ADVLTKAL R
Sbjct:  130 DNQSAMALAKNSEFHDRTKHIAVRHHFIRDEIEEGRIRVAYVPTGDQVADVLTKALAR 187          
BLAST of mRNA_H-paniculata_contig30468.8254.1 vs. uniprot
Match: A0A8J6HPC5_TENMO (Integrase catalytic domain-containing protein n=1 Tax=Tenebrio molitor TaxID=7067 RepID=A0A8J6HPC5_TENMO)

HSP 1 Score: 59.7 bits (143), Expect = 1.140e-8
Identity = 29/61 (47.54%), Postives = 40/61 (65.57%), Query Frame = 1
Query:   25 VIIKEDNQGAEKMAHNNHSNRRTRHIDVKHHIVGNAVEAGKVDVVYAGTGEQHADVLTKAL 207
             II  DNQGA +++ NN  + RT+H+D++HH +  AVE G + V Y  T +  ADVLTK L
Sbjct: 1056 TIIFNDNQGAGQLSKNNVFHNRTKHVDIRHHFIREAVERGDIKVEYLPTDQMPADVLTKGL 1116          
BLAST of mRNA_H-paniculata_contig30468.8254.1 vs. uniprot
Match: A0A0P1A9P4_PLAHL (FOG: Transposon-encoded proteins with TYA, reverse transcriptase, integrase domains in various combinations n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1A9P4_PLAHL)

HSP 1 Score: 56.6 bits (135), Expect = 1.730e-8
Identity = 28/67 (41.79%), Postives = 44/67 (65.67%), Query Frame = 1
Query:   22 PVIIKEDNQGAEKMAHNNHSNRRTRHIDVKHHIVGNAVEAGKVDVVYAGTGEQHADVLTKALERSCF 222
            PV I EDNQG+  +A N   ++RT+HID+++H+V   VE G+V ++Y  T    AD++TK +  + F
Sbjct:   28 PVRIFEDNQGSFALAKNPEFHKRTKHIDIRYHLVREKVEGGQVILLYCSTKAMKADMMTKPITAAQF 94          
BLAST of mRNA_H-paniculata_contig30468.8254.1 vs. uniprot
Match: A0A6V7M3Q4_9HYME (Uncharacterized protein (Fragment) n=1 Tax=Bracon brevicornis TaxID=1563983 RepID=A0A6V7M3Q4_9HYME)

HSP 1 Score: 57.0 bits (136), Expect = 1.950e-8
Identity = 26/62 (41.94%), Postives = 42/62 (67.74%), Query Frame = 1
Query:   22 PVIIKEDNQGAEKMAHNNHSNRRTRHIDVKHHIVGNAVEAGKVDVVYAGTGEQHADVLTKAL 207
            P+ I EDN G   +A+N  ++++T+HID+K+HI+   +E G + + Y  TG+Q  D LTK+L
Sbjct:   72 PISIHEDNMGCISIANNPTNHKKTKHIDIKYHIIRKQIEKGLIILKYVPTGKQLTDALTKSL 133          
BLAST of mRNA_H-paniculata_contig30468.8254.1 vs. uniprot
Match: A0A6H5JRB0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRB0_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 2.090e-8
Identity = 27/63 (42.86%), Postives = 42/63 (66.67%), Query Frame = 1
Query:   25 VIIKEDNQGAEKMAHNNHSNRRTRHIDVKHHIVGNAVEAGKVDVVYAGTGEQHADVLTKALER 213
            + + EDN+GA  +  N  S+ R++H+DV+ H++    ++GK+   Y  TGEQHAD+LTK L R
Sbjct:  536 IKVLEDNKGALALIENPFSSSRSKHLDVRFHVIRELFKSGKITAEYVPTGEQHADMLTKVLGR 598          
BLAST of mRNA_H-paniculata_contig30468.8254.1 vs. uniprot
Match: A0A182GDI5_AEDAL (Uncharacterized protein n=1 Tax=Aedes albopictus TaxID=7160 RepID=A0A182GDI5_AEDAL)

HSP 1 Score: 55.8 bits (133), Expect = 2.200e-8
Identity = 30/67 (44.78%), Postives = 43/67 (64.18%), Query Frame = 1
Query:   22 PVIIKEDNQGAEKMAHNNHSNRRTRHIDVKHHIVGNAVEAGKVDVVYAGTGEQHADVLTKALERSCF 222
            P+ I+ DNQ    +A N   N RT+HID++HH + +A+E G V++ Y  T +Q AD LTK L+R  F
Sbjct:   25 PIEIRCDNQSCIAIAKNGGYNPRTKHIDIRHHYIRDALEQGIVNLSYVCTEDQVADGLTKPLQRVKF 91          
BLAST of mRNA_H-paniculata_contig30468.8254.1 vs. uniprot
Match: A0A0A9Y2Q5_LYGHE (Copia protein (Fragment) n=1 Tax=Lygus hesperus TaxID=30085 RepID=A0A0A9Y2Q5_LYGHE)

HSP 1 Score: 56.2 bits (134), Expect = 2.290e-8
Identity = 28/62 (45.16%), Postives = 43/62 (69.35%), Query Frame = 1
Query:   22 PVIIKEDNQGAEKMAHNNHSNRRTRHIDVKHHIVGNAVEAGKVDVVYAGTGEQHADVLTKAL 207
            PV++  DNQGA+K++ N   +RR++HID++ + + +AV  G+V + Y  T E  ADVLTK L
Sbjct:   44 PVVLCNDNQGAQKLSSNPVFHRRSKHIDIRMYFIRDAVNNGEVKLEYVPTEEMVADVLTKGL 105          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig30468.8254.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KDZ6_9PHAE9.140e-1046.03Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5GUV6_9HEMI2.340e-948.39Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5HSM1_9HEMI6.060e-948.39Integrase catalytic domain-containing protein n=1 ... [more]
A0A5K1JYL8_9APHY1.120e-850.00Isocitrate lyase (ICL) (Isocitrase) (Isocitratase)... [more]
A0A8J6HPC5_TENMO1.140e-847.54Integrase catalytic domain-containing protein n=1 ... [more]
A0A0P1A9P4_PLAHL1.730e-841.79FOG: Transposon-encoded proteins with TYA, reverse... [more]
A0A6V7M3Q4_9HYME1.950e-841.94Uncharacterized protein (Fragment) n=1 Tax=Bracon ... [more]
A0A6H5JRB0_9PHAE2.090e-842.86Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A182GDI5_AEDAL2.200e-844.78Uncharacterized protein n=1 Tax=Aedes albopictus T... [more]
A0A0A9Y2Q5_LYGHE2.290e-845.16Copia protein (Fragment) n=1 Tax=Lygus hesperus Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig30468contigH-paniculata_contig30468:2474..2695 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score60.5
Seed ortholog evalue3.9e-07
Seed eggNOG ortholog7425.NV19004-PA
Preferred nameS2P
KEGG koko:K07765
KEGG Pathwayko04141,map04141
Hectar predicted targeting categoryother localisation
GOsGO:0006355,GO:0006357,GO:0006508,GO:0006807,GO:0006950,GO:0006984,GO:0006986,GO:0006991,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016485,GO:0019219,GO:0019222,GO:0019538,GO:0023052,GO:0030968,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0032933,GO:0033554,GO:0034620,GO:0034976,GO:0035103,GO:0035966,GO:0035967,GO:0036003,GO:0036500,GO:0042221,GO:0043170,GO:0043618,GO:0043620,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0045893,GO:0045935,GO:0045944,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051090,GO:0051091,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0051604,GO:0051716,GO:0060255,GO:0065007,GO:0065009,GO:0070887,GO:0071310,GO:0071501,GO:0071704,GO:0080090,GO:1901564,GO:1902680,GO:1903506,GO:1903508,GO:1990440,GO:2000112,GO:2001141
EggNOG free text desc.metalloendopeptidase activity. It is involved in the biological process described with proteolysis
EggNOG OGs38CBR@33154,3BD1M@33208,3CUKW@33213,3SHQG@50557,41WB8@6656,46H1H@7399,COG0750@1,COG2801@1,KOG0017@2759,KOG2921@2759
EC3.4.24.85
COG Functional cat.O
Best tax levelHymenoptera
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002
Exons1
Model size222
Cds size222
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929934.8531797-CDS-H-paniculata_contig30468:2473..26951622929934.8531797-CDS-H-paniculata_contig30468:2473..2695Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig30468 2474..2695 -
1691481076.4721792-CDS-H-paniculata_contig30468:2473..26951691481076.4721792-CDS-H-paniculata_contig30468:2473..2695Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig30468 2474..2695 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig30468.8254.1prot_H-paniculata_contig30468.8254.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig30468 2474..2695 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig30468.8254.1

>prot_H-paniculata_contig30468.8254.1 ID=prot_H-paniculata_contig30468.8254.1|Name=mRNA_H-paniculata_contig30468.8254.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=74bp
MSTLEHYPVIIKEDNQGAEKMAHNNHSNRRTRHIDVKHHIVGNAVEAGKV
DVVYAGTGEQHADVLTKALERSCF
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mRNA from alignment at H-paniculata_contig30468:2474..2695-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig30468.8254.1 ID=mRNA_H-paniculata_contig30468.8254.1|Name=mRNA_H-paniculata_contig30468.8254.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=222bp|location=Sequence derived from alignment at H-paniculata_contig30468:2474..2695- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCAACGCTGGAACATTACCCCGTAATAATTAAGGAAGACAATCAAGG GGCCGAAAAGATGGCCCACAACAACCACAGCAATCGGAGGACGCGTCACA TCGATGTGAAGCACCACATTGTTGGCAATGCGGTTGAGGCTGGGAAGGTT GACGTAGTCTATGCGGGGACGGGAGAGCAGCACGCAGATGTGCTTACGAA GGCGCTGGAGAGGAGTTGTTTT
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Coding sequence (CDS) from alignment at H-paniculata_contig30468:2474..2695-

>mRNA_H-paniculata_contig30468.8254.1 ID=mRNA_H-paniculata_contig30468.8254.1|Name=mRNA_H-paniculata_contig30468.8254.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=444bp|location=Sequence derived from alignment at H-paniculata_contig30468:2474..2695- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCAACGCTGGAACATTACCCCGTAATAATTAAGGAAGACAATCAAGG
GGCCGAAAAGATGGCCCACAACAACCACAGCAATCGGAGGACGCGTCACA
TCGATGTGAAGCACCACATTGTTGGCAATGCGGTTGAGGCTGGGAAGGTT
GACGTAGTCTATGCGGGGACGGGAGAGCAGCACGCAGATGTGCTTACGAA
GGCGCTGGAGAGGAGTTGTTTTATGTCAACGCTGGAACATTACCCCGTAA
TAATTAAGGAAGACAATCAAGGGGCCGAAAAGATGGCCCACAACAACCAC
AGCAATCGGAGGACGCGTCACATCGATGTGAAGCACCACATTGTTGGCAA
TGCGGTTGAGGCTGGGAAGGTTGACGTAGTCTATGCGGGGACGGGAGAGC
AGCACGCAGATGTGCTTACGAAGGCGCTGGAGAGGAGTTGTTTT
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