mRNA_H-paniculata_contig30453.8251.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig30453.8251.1
Unique NamemRNA_H-paniculata_contig30453.8251.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig30453.8251.1 vs. uniprot
Match: A0A485L7G2_9STRA (Aste57867_16617 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L7G2_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 2.750e-6
Identity = 31/85 (36.47%), Postives = 47/85 (55.29%), Query Frame = 3 
Query:  183 EESWICDSGATGHATPSAANMSSYRQVKETLRIASGQVIPIVGRGNLNMTFRTSKGFVPLSVL--NVA-----HAPELHYNLFSL 416
            ++ WI DSGAT   TP+    S Y   K++LR+A G+++ ++G G L + F  S+   P  V   NV      H P+L +NL S+
Sbjct:  362 KDHWIIDSGATASTTPTRTFFSKYVPCKQSLRVADGKMLAVIGYGELCLRFNLSEPDPPAQVRKGNVLFTFGLHCPDLKFNLLSV 446
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BLAST of mRNA_H-paniculata_contig30453.8251.1 vs. uniprot
Match: A0A445M2Q0_GLYSO (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Glycine soja TaxID=3848 RepID=A0A445M2Q0_GLYSO)

HSP 1 Score: 55.5 bits (132), Expect = 4.260e-6
Identity = 34/86 (39.53%), Postives = 54/86 (62.79%), Query Frame = 3 
Query:  186 ESWICDSGATGHATPSAANMSSYRQVK-ETLRIASGQVIPIVGRGNLNMTFRTSKGFVPLSVLNVAHAPELHYNLFSLRKVADAGN 440
            +SWI DSGA+ H TPS   +S+Y   +   + +A G+ + IVGRG++N+  +TS G +  ++ NV H P L  NL S+ ++ D G+
Sbjct:  265 DSWIMDSGASFHTTPSKDLLSNYVSGRFGKVYLADGKSLDIVGRGDINI--KTSSGSL-WTLHNVRHIPALKRNLISIGQLDDEGH 347
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BLAST of mRNA_H-paniculata_contig30453.8251.1 vs. uniprot
Match: A0A445M280_GLYSO (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Glycine soja TaxID=3848 RepID=A0A445M280_GLYSO)

HSP 1 Score: 55.5 bits (132), Expect = 4.360e-6
Identity = 34/86 (39.53%), Postives = 54/86 (62.79%), Query Frame = 3 
Query:  186 ESWICDSGATGHATPSAANMSSYRQVK-ETLRIASGQVIPIVGRGNLNMTFRTSKGFVPLSVLNVAHAPELHYNLFSLRKVADAGN 440
            +SWI DSGA+ H TPS   +S+Y   +   + +A G+ + IVGRG++N+  +TS G +  ++ NV H P L  NL S+ ++ D G+
Sbjct: 1161 DSWIMDSGASFHTTPSKDLLSNYVSGRFGKVYLADGKSLDIVGRGDINI--KTSSGSL-WTLHNVRHIPALKRNLISIGQLDDEGH 1243
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BLAST of mRNA_H-paniculata_contig30453.8251.1 vs. uniprot
Match: H3H469_PHYRM (Retrotran_gag_3 domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H469_PHYRM)

HSP 1 Score: 53.1 bits (126), Expect = 2.410e-5
Identity = 29/85 (34.12%), Postives = 48/85 (56.47%), Query Frame = 3 
Query:  183 EESWICDSGATGHATPSAANMSSYRQV-KETLRIASGQVIPIVGRGNLNMTFRTSKGFVPL-SVLNVAHAPELHYNLFSLRKVAD 431
            + +W  DSG T + T S       + +  +T+ +     IPI+G+G +NMT   +KG   + S+ +V +APEL +NL S+R+  D
Sbjct:  378 DPAWTIDSGCTRYVTSSPHWFEDLKPIIGKTITVGGNHQIPILGKGTVNMTVTDTKGSKRIISLSDVLYAPELKFNLLSVRQAVD 462
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig30453.8251.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A485L7G2_9STRA2.750e-636.47Aste57867_16617 protein n=1 Tax=Aphanomyces stella... [more]
A0A445M2Q0_GLYSO4.260e-639.53Retrovirus-related Pol polyprotein from transposon... [more]
A0A445M280_GLYSO4.360e-639.53Retrovirus-related Pol polyprotein from transposon... [more]
H3H469_PHYRM2.410e-534.12Retrotran_gag_3 domain-containing protein n=1 Tax=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig30453contigH-paniculata_contig30453:1209..1865 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score63.2
Seed ortholog evalue1.2e-07
Seed eggNOG ortholog161934.XP_010672823.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.gag-polypeptide of LTR copia-type
EggNOG OGs37Z1Z@33090,3GN55@35493,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
Exons2
Model size440
Cds size423
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig30453.8251.1prot_H-paniculata_contig30453.8251.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig30453 1226..1865 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929934.6367693-UTR-H-paniculata_contig30453:1208..12251622929934.6367693-UTR-H-paniculata_contig30453:1208..1225Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig30453 1209..1225 +
1691481076.385915-UTR-H-paniculata_contig30453:1208..12251691481076.385915-UTR-H-paniculata_contig30453:1208..1225Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig30453 1209..1225 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929934.6494775-CDS-H-paniculata_contig30453:1225..13311622929934.6494775-CDS-H-paniculata_contig30453:1225..1331Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig30453 1226..1331 +
1691481076.4070022-CDS-H-paniculata_contig30453:1225..13311691481076.4070022-CDS-H-paniculata_contig30453:1225..1331Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig30453 1226..1331 +
1622929934.6631699-CDS-H-paniculata_contig30453:1548..18651622929934.6631699-CDS-H-paniculata_contig30453:1548..1865Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig30453 1549..1865 +
1691481076.4164796-CDS-H-paniculata_contig30453:1548..18651691481076.4164796-CDS-H-paniculata_contig30453:1548..1865Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig30453 1549..1865 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig30453.8251.1

>prot_H-paniculata_contig30453.8251.1 ID=prot_H-paniculata_contig30453.8251.1|Name=mRNA_H-paniculata_contig30453.8251.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=141bp
MGQQARRRKERFQEVLQERSSVQEQQLRTSIYEFSSEFGLFIHVGKSGEL
GVGVEEESWICDSGATGHATPSAANMSSYRQVKETLRIASGQVIPIVGRG
NLNMTFRTSKGFVPLSVLNVAHAPELHYNLFSLRKVADAGN
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mRNA from alignment at H-paniculata_contig30453:1209..1865+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig30453.8251.1 ID=mRNA_H-paniculata_contig30453.8251.1|Name=mRNA_H-paniculata_contig30453.8251.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=657bp|location=Sequence derived from alignment at H-paniculata_contig30453:1209..1865+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCAGGAGGGCGAGCCGGATGGGGCAACAAGCCAGGAGGCGGAAAGAGCGG
TTTCAAGAAGTTCTTCAAGAAAGGAGCAGCGTCCAAGAACAGCAACTCCG
CACCAGTATCTACGAGTTCAGCAGCCGCGCCTGCGCCAACAGGTTTCATG
TGTGGGAAGTGCAAGAAGGTGGGGCACAAAACAGAGCGTTGTCCCGACCA
AGTGTGTCAAGGATGTGGGGGAAAGGGGCATCACTCCGATGTGTGTTCTA
CACTACATGACTTGACCGTGGTAGCTTGCCAAGAACAAGAAAGTTCGGAC
GATGAGGAGTGTGACGCCTTCATCGCCGAAGAATTCGCAGGCGAGTTTGG
TTTATTTATACATGTAGGGAAGTCGGGAGAGCTTGGCGTTGGAGTAGAGG
AAGAGTCGTGGATTTGTGACAGTGGGGCCACGGGTCACGCAACACCGTCT
GCGGCTAACATGTCTAGCTATAGGCAAGTAAAAGAGACGCTGCGGATAGC
GTCAGGACAAGTGATCCCGATTGTTGGTCGGGGGAACTTGAACATGACAT
TTAGGACGAGTAAAGGATTTGTGCCTCTCTCTGTTCTGAATGTCGCACAT
GCCCCTGAACTTCACTACAATTTATTTTCGCTGAGGAAAGTGGCCGATGC
TGGCAAT
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Coding sequence (CDS) from alignment at H-paniculata_contig30453:1209..1865+

>mRNA_H-paniculata_contig30453.8251.1 ID=mRNA_H-paniculata_contig30453.8251.1|Name=mRNA_H-paniculata_contig30453.8251.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=846bp|location=Sequence derived from alignment at H-paniculata_contig30453:1209..1865+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGGCAACAAGCCAGGAGGCGGAAAGAGCGGTTTCAAGAAGTTCTTCA
AGAAAGGAGCAGCGTCCAAGAACAGCAACTCCGCACCAGTATCTACGAGT
TCAGCAATGGGGCAACAAGCCAGGAGGCGGAAAGAGCGGTTTCAAGAAGT
TCTTCAAGAAAGGAGCAGCGTCCAAGAACAGCAACTCCGCACCAGTATCT
ACGAGTTCAGCAGCGAGTTTGGTTTATTTATACATGTAGGGAAGTCGGGA
GAGCTTGGCGTTGGAGTAGAGGAAGAGTCGTGGATTTGTGACAGTGGGGC
CACGGGTCACGCAACACCGTCTGCGGCTAACATGTCTAGCTATAGGCAAG
TAAAAGAGACGCTGCGGATAGCGTCAGGACAAGTGATCCCGATTGTTGGT
CGGGGGAACTTGAACATGACATTTAGGACGAGTAAAGGATTTGTGCCTCT
CTCTGTTCTGAATGTCGCACATGCCCCTGAACTTCACTACAATTTATTTT
CGCTGAGGAAAGTGGCCGATGCTGGCAATGCGAGTTTGGTTTATTTATAC
ATGTAGGGAAGTCGGGAGAGCTTGGCGTTGGAGTAGAGGAAGAGTCGTGG
ATTTGTGACAGTGGGGCCACGGGTCACGCAACACCGTCTGCGGCTAACAT
GTCTAGCTATAGGCAAGTAAAAGAGACGCTGCGGATAGCGTCAGGACAAG
TGATCCCGATTGTTGGTCGGGGGAACTTGAACATGACATTTAGGACGAGT
AAAGGATTTGTGCCTCTCTCTGTTCTGAATGTCGCACATGCCCCTGAACT
TCACTACAATTTATTTTCGCTGAGGAAAGTGGCCGATGCTGGCAAT
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