mRNA_H-paniculata_contig3045.8249.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3045.8249.1
Unique NamemRNA_H-paniculata_contig3045.8249.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig3045.8249.1 vs. uniprot
Match: A0A0C2WN23_AMAMK (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Amanita muscaria (strain Koide BX008) TaxID=946122 RepID=A0A0C2WN23_AMAMK)

HSP 1 Score: 141 bits (356), Expect = 2.340e-34
Identity = 77/268 (28.73%), Postives = 145/268 (54.10%), Query Frame = 1
Query:   10 EPRNHREAQASSERKDWKRAEEVEMQGLIDNGVWTQVECPKNNLVVSTMMMMIYKRKIREDGNVEKYKCRLVGHGNR*ITGVHFQEALCPAPAAASTKMMLSLAAIQDWELRNVYFEHAYLQALIGQEIFVEIPVIYREFRGAVWRLDKAIYVWVQAGRCWSMEATADFTAKGSEQSHADRCMFHKIVDGEVVAVIIIYADNLLISTKGPKIAAEFLADLRSDHKLKELRDARYYLGCHTTRDRKKRKINIDQHLYARSMAERFGITK 813
            +P ++ +A +  +  +W++A E E++     GV+ +V  P++  ++ +    ++K K   DG VEKYK RLV  G   + G+ + E   P   + S +++L+LAA  DWE+  +  + A+L   + +EI++++P  ++    AVWRL KA+Y   QA R W  + +A+    G  +  AD C+F+K +D     +I +Y D+ ++ +    +  +  +DL S   + +L +  + L    TR+R++R I + Q  Y   + ER G+ +
Sbjct:  994 DPLSYVDAMSQEDAAEWRKACEAELEMFKQLGVFEEVPRPRDRKIIGSKW--VFKTKTGPDGQVEKYKARLVAQGFSQVEGIDYNETFAPVTKSNSIRLLLALAARHDWEIHQMDVKSAFLNGELEEEIYMKVPPGHKASADAVWRLKKALYGLKQASREWYKKLSAELKTLGFTRLQADHCVFYKNMDRHP-PIIAVYVDDNMVLSDSLDLVTKTKSDLGSRFDMTDLGEVCWILNMEVTRNRQERTIRLSQSQYIEDILERHGMAE 1258          
BLAST of mRNA_H-paniculata_contig3045.8249.1 vs. uniprot
Match: A0A4S4KBB0_9APHY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Hermanssonia centrifuga TaxID=98765 RepID=A0A4S4KBB0_9APHY)

HSP 1 Score: 135 bits (340), Expect = 2.110e-33
Identity = 82/269 (30.48%), Postives = 134/269 (49.81%), Query Frame = 1
Query:    1 LPVEPRNHREAQASSERKDWKRAEEVEMQGLIDNGVWTQVECPKNNLVVSTMMMMIYKRKIREDGNVEKYKCRLVGHGNR*ITGVHFQEALCPAPAAASTKMMLSLAAIQDWELRNVYFEHAYLQALIGQEIFVEIPVIYREFRGAVWRLDKAIYVWVQAGRCWSMEATADFTAKGSEQSHADRCMFHKIVDGEVVAVIIIYADNLLISTKGPKIAAEFLADLRSDHKLKELRDARYYLGCHTTRDRKKRKINIDQHLYARSMAERFGI 807
            L   P  H+EA A  +   WK AE  E++  +   ++T+V  PK   +V    +   KR    DG V KYK RLV  G   I GV + E   P     S + +L+LAA+ + E+  +  + A+L   + +EI+++ P  ++   G VW+L+K++Y   QA   W     A+F   G  +S  D  +F K  DG ++   +   D LLIS + P I  +  +DL +  ++ +L +A + L     RDR +  + + Q  Y  ++  RFG+
Sbjct:  141 LSEPPLTHKEAMARPDAPQWKLAEIAEIEAFVKAKLFTEVNKPKGRRLVDCKWVYTIKRG--PDGEVIKYKARLVARGFTQIEGVDYNETFAPVSKFTSIRSLLALAAVHNLEIHQMDVKSAFLNGDLNEEIYMQCPPGFKAKDGNVWKLNKSLYGLKQASCEWYKRVCAEFKTMGFTRSDHDHAIFFKYEDGHLLIAAVYVDDMLLISDRMPAIQ-KLKSDLSTRFEMTDLGEAHWILNMEIVRDRPRHTLTLTQRQYTETILNRFGL 406          
BLAST of mRNA_H-paniculata_contig3045.8249.1 vs. uniprot
Match: A0A401GYH9_9APHY (Uncharacterized protein n=6 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GYH9_9APHY)

HSP 1 Score: 138 bits (347), Expect = 3.680e-33
Identity = 85/267 (31.84%), Postives = 142/267 (53.18%), Query Frame = 1
Query:   10 EPRNHREAQASSERKDWKRAEEVEMQGLIDNGVWTQVECPKNNLVVSTMMMMIYKRKIREDGNVEKYKCRLVGHGNR*ITGVHFQEALCPAPAAASTKMMLSLAAIQDWELRNVYFEHAYLQALIGQEIFVEIPVIYREFRGAVWRLDKAIYVWVQAGRCWSMEATADFTAKGSEQSHADRCMF-HKIVDGEVVAVIIIYADNLLISTKGPKIAAEFLADLRSDHKLKELRDARYYLGCHTTRDRKKRKINIDQHLYARSMAERFGI 807
            EPR+  EAQAS E  +W++A + E   L   G W   + PK+   V      +++RK  ++G V KYK RLV  G   I G+ F E   P     S + +L+LA + +WE+  +  + AYL   + +EI++  P  + +  G + RL K +Y   Q+GR W+ +   + T  G ++  AD C++  +  +GEV  +I ++ D+LL+ T  PK+  E   DL+   ++ +L + +  +G    RDR+  KI I Q  Y  S+ +R+ +
Sbjct:  906 EPRSLAEAQASPEWPEWEKAVKAEYDQLQGMGTWELQDLPKDRNAVGCKW--VFQRKTNKEGQVVKYKARLVAQGYSQIPGMDFLETFAPVVRLESIRAILALAVVNNWEIGQMDVKGAYLNGDLQEEIYMRQPEGFDDGSGRICRLRKTLYGLKQSGREWNRKLHRELTELGYKRLEADPCVYLWERKEGEV-QIITVWVDDLLLFTNSPKLMEELKRDLQDLFEVTDLGEPQKIVGIEIERDREAGKIQISQQHYIESILKRYQL 1169          
BLAST of mRNA_H-paniculata_contig3045.8249.1 vs. uniprot
Match: A0A2R6NZJ8_9APHY (Integrase catalytic domain-containing protein n=1 Tax=Hermanssonia centrifuga TaxID=98765 RepID=A0A2R6NZJ8_9APHY)

HSP 1 Score: 137 bits (346), Expect = 4.940e-33
Identity = 83/269 (30.86%), Postives = 134/269 (49.81%), Query Frame = 1
Query:    1 LPVEPRNHREAQASSERKDWKRAEEVEMQGLIDNGVWTQVECPKNNLVVSTMMMMIYKRKIREDGNVEKYKCRLVGHGNR*ITGVHFQEALCPAPAAASTKMMLSLAAIQDWELRNVYFEHAYLQALIGQEIFVEIPVIYREFRGAVWRLDKAIYVWVQAGRCWSMEATADFTAKGSEQSHADRCMFHKIVDGEVVAVIIIYADNLLISTKGPKIAAEFLADLRSDHKLKELRDARYYLGCHTTRDRKKRKINIDQHLYARSMAERFGI 807
            L   P  H+EA A  +   WK AE  E++  +   ++T+V  PK   +V    +   KR    DG V KYK RLV  G   I GV + E   P     S + +L+LAA+ + E+  +  + A+L   + +EI+++ P  ++   G VW+L+K++Y   QA R W     A+F   G  +S  D  +F K  DG ++   +   D LLIS   P I  +  +DL +  ++ +L +A + L     RDR +  + + Q  Y  ++  RFG+
Sbjct:  965 LDEPPLTHKEAMARPDASQWKLAEIAEIEAFVKAKLFTEVNKPKGRRLVDCKWVYTIKRG--PDGEVIKYKARLVARGFTQIEGVDYNETFAPVSKFTSIRSLLALAAVHNLEIHQMDVKSAFLNGDLNEEIYMQCPPGFKAKDGNVWKLNKSLYGLKQASREWYKRVCAEFKTMGFTRSDHDHAIFFKYEDGHLLIAAVYVDDMLLISDHMPAIQ-KLKSDLSTRFEMTDLGEAHWILNMEIVRDRPRHTLTLTQRQYTETILNRFGL 1230          
BLAST of mRNA_H-paniculata_contig3045.8249.1 vs. uniprot
Match: A0A284QR88_ARMOS (Uncharacterized protein n=2 Tax=Armillaria TaxID=47424 RepID=A0A284QR88_ARMOS)

HSP 1 Score: 135 bits (339), Expect = 4.250e-32
Identity = 82/265 (30.94%), Postives = 139/265 (52.45%), Query Frame = 1
Query:   13 PRNHREAQASSERKDWKRAEEVEMQGLIDNGVWTQVECPKNNLVVSTMMMMIYKRKIREDGNVEKYKCRLVGHGNR*ITGVHFQEALCPAPAAASTKMMLSLAAIQDWELRNVYFEHAYLQALIGQEIFVEIPVIYREFRGAVWRLDKAIYVWVQAGRCWSMEATADFTAKGSEQSHADRCMFHKIVDGEVVAVIIIYADNLLISTKGPKIAAEFLADLRSDHKLKELRDARYYLGCHTTRDRKKRKINIDQHLYARSMAERFGI 807
            PR+  EA+AS E  +WK+A + EM  + + G +T+ + P     +      ++ +K  EDGN+ +YK RLV  G   I GV + E   P     S +  L +AAI+D E+  +  + AYL   + +EI++  P  Y +  G V RL K +Y   Q+GR W+ E     T+ G  +  AD C++ +I +G +  +I ++ D+LLI ++  +   E   +L +   +K+L + +  +G    RDR+   I++ Q  Y   +  RFG+
Sbjct:  879 PRSVAEAEASPEWAEWKKAMDEEMSVIKEMGTYTKEDLPAGRDTIGCKW--VFLKKYDEDGNISRYKARLVAQGYSQIPGVDYTETFAPVVRLESVRAALGIAAIKDLEISQMDVKGAYLNGELEEEIYMRQPEGYDDGSGRVCRLRKTLYGLKQSGREWNREFDRKLTSIGFSKLEADHCVYKRIREGRMT-IITVWVDDLLIFSETIEDMMETKGELHNLFDVKDLGEPKKIIGIEIKRDRENGTISLSQKQYIEGVLTRFGM 1140          
BLAST of mRNA_H-paniculata_contig3045.8249.1 vs. uniprot
Match: A0A2R6NJS8_9APHY (Integrase catalytic domain-containing protein n=1 Tax=Hermanssonia centrifuga TaxID=98765 RepID=A0A2R6NJS8_9APHY)

HSP 1 Score: 134 bits (338), Expect = 5.500e-32
Identity = 82/270 (30.37%), Postives = 136/270 (50.37%), Query Frame = 1
Query:   10 EPRNHREAQASSERKDWKRAEEVEMQGLIDNGVWTQVECPKNNLVVSTMMMMIYKRKIREDGNVEKYKCRLVGHGNR*ITGVHFQEALCPAPAAASTKM--MLSLAAIQDWELRNVYFEHAYLQALIGQEIFVEIPVIYRE--FRGAVWRLDKAIYVWVQAGRCWSMEATADFTAKGSEQSHADRCMFHKIVDGEVVAVIIIYADNLLISTKGPKIAAEFLADLRSDHKLKELRDARYYLGCHTTRDRKKRKINIDQHLYARSMAERFGI 807
            EPR +REA  S+  K W+ A  +E + L D G    V+ P +  + S   +++Y+ K   DGN+ K+K R+V  G   + G  +      +     T +   +S  A QDWEL  +    AYLQ  + +EI++++P   +E    G  WRL KA+Y   Q+GR W  +        G E+  AD C++    DG +V ++++Y D++ ++ K   +   F  DL     + +  D  + LG    R+R+ R I+++Q  Y R   +RFG+
Sbjct:  562 EPRTYREAAQSAYSKQWEEALGIEYRQLQDTGTIEWVKTPPSEAIGS---LVVYRAKHDGDGNLAKFKARIVARGCSQVPGRDYNPLFVSSSVFRFTTLRAFMSFVADQDWELHQMDVVGAYLQGDLDEEIYMKVPEGIKEPGKEGWCWRLKKALYGLKQSGRQWKKKLDEAMAELGFEKGQADECLYVLKEDGHIVLMVLVYVDDMAVAGKKLALVKRFKHDLAERFDITDGGDLTFILGVQVIRNRQNRTIHMNQTTYIRGFLDRFGM 828          
BLAST of mRNA_H-paniculata_contig3045.8249.1 vs. uniprot
Match: A0A1C7MSU6_GRIFR (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Grifola frondosa TaxID=5627 RepID=A0A1C7MSU6_GRIFR)

HSP 1 Score: 132 bits (333), Expect = 2.250e-31
Identity = 83/266 (31.20%), Postives = 138/266 (51.88%), Query Frame = 1
Query:   10 EPRNHREAQASSERKDWKRAEEVEMQGLIDNGVWTQVECPKNNLVVSTMMMMIYKRKIREDGNVEKYKCRLVGHGNR*ITGVHFQEALCPAPAAASTKMMLSLAAIQDWELRNVYFEHAYLQALIGQEIFVEIPVIYREFRGAVWRLDKAIYVWVQAGRCWSMEATADFTAKGSEQSHADRCMFHKIVDGEVVAVIIIYADNLLISTKGPKIAAEFLADLRSDHKLKELRDARYYLGCHTTRDRKKRKINIDQHLYARSMAERFGI 807
            +P+++ EA +  + + WK A   E+   +   ++ +VE P++  VV    +   KR    DG +EKYK R+V  G   + GV + +   P    AS + +L+LAA  D E+  +  + A+L   + +EIF+  P  ++  R  VW+L KA+Y   QA R W  +  A+F + G  +S+AD  +F+K  DG V+ ++ +Y D++LI            ADL S + + +L +AR  L     RDR +R I + Q  Y  S+    G+
Sbjct:  281 DPQSYEEAMSRPDAERWKAACAEELLTFVKAELYDEVERPRDRKVVGCKWVFRIKRG--PDGEIEKYKARVVAKGFTQVEGVDYTDTFAPVTKFASIRALLALAAKLDLEIHQMDVKSAFLNGNLDEEIFMACPPGFQGARNIVWQLRKALYGLKQASREWYKKIRAEFESLGFTRSNADHSVFYKNEDG-VLLIVAVYIDDMLIFCNSLPAVEALKADLGSHYDMTDLGEARRILNIKIIRDRARRTIELTQRQYVESILTHQGM 543          
BLAST of mRNA_H-paniculata_contig3045.8249.1 vs. uniprot
Match: A0A0J7KG03_LASNI (Retrovirus-related pol polyprotein from transposon tnt 1-94 n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7KG03_LASNI)

HSP 1 Score: 132 bits (331), Expect = 4.440e-31
Identity = 87/260 (33.46%), Postives = 131/260 (50.38%), Query Frame = 1
Query:    7 VEPRNHREAQASSERKDWKRAEEVEMQGLIDNGVWTQVECPKNNLVVSTMMMMIYKRKIREDGNVEKYKCRLVGHGNR*ITGVHFQEALCPAPAAASTKMMLSLAAIQDWELRNVYFEHAYLQALIGQEIFVEIP--VIYREFRGAVWRLDKAIYVWVQA-GRCWSMEATADFTAKGSEQSHADRCMFHKIVDGEVVAVIIIYADNLLISTKGPKIAAEFLADLRSDHKLKELRDARYYLGCHTTRDRKKRKINIDQHLY 777
             +P N  EA  SS+   W +A E E   L  NG WT V+ PK+   + T  +   KR +   G +++YK RLV  G   I G+ + E   P     S + + +LA   D  +  +    AYL   I QEI+V+ P  ++    +G VWR    +Y+  +A GR W+ +     T  G ++S AD C++ K  D + + +I +Y D+LLI     K+       L     +K+L +A+Y LG + TRDRK RKI +DQ  Y
Sbjct:  627 TDPENLEEALNSSDSVTWIKAMEEERDFLAKNGTWTLVDLPKDKRALDTKWVFKTKRDVT--GQIKRYKARLVVRGCSQIEGIDYNETYSPVVRYTSIQFLCALAVKHDLYMDQMDVTAAYLHGDIEQEIYVKPPEELVKSGEKGKVWR--PKVYIRTEASGRAWNKKFHDTLTDMGFKRSQADSCVYFKR-DNKSLVIIAVYVDDLLILASNEKVKTSLKKKLSQTFDMKDLGEAKYLLGMNITRDRKARKIWLDQSTY 881          
BLAST of mRNA_H-paniculata_contig3045.8249.1 vs. uniprot
Match: A0A150G7P2_GONPE (Integrase catalytic domain-containing protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150G7P2_GONPE)

HSP 1 Score: 131 bits (330), Expect = 5.680e-31
Identity = 84/271 (31.00%), Postives = 141/271 (52.03%), Query Frame = 1
Query:    1 LPVEPRNHREAQASSERKDWKRAEEVEMQGLIDNGVWTQVECPKNNLVVSTMMMMIYKRKIREDGNVEKYKCRLVGHGNR*ITGVHFQEALCPAPAAASTKMMLSLAAIQDWELRNVYFEHAYLQA-LIGQEIFV-EIPVIYREFRGAVWRLDKAIYVWVQAGRCWSMEATADFTAKGSEQSHADRCMFHKIVDGEVVAVIIIYADNLLISTKGPKIAAEFLADLRSDHKLKELRDARYYLGCHTTRDRKKRKINIDQHLYARSMAERFGI 807
            LPV P N  EA++  +   WK+A + E+  L  N  WT V+  +   V+    +  Y+      GN+E+YK RLV  G   + G+ F E   P    A+ +  LS+ A++D EL  +  + A+L   L   ++ V ++P   +  R    RL+KA+Y   QA R W     ++  A G + S +D  +F K  DG+ V  +++Y D+LLI+    +  A+  + L S  ++++L +AR++LG    RDR  R + + Q  YA ++  +FG+
Sbjct:  504 LPVPPDNIEEAKSRPDWPMWKKACDEEIASLYCNNTWTLVQVSRATRVIGVKWVFSYE--FDASGNIERYKARLVAKGYSQVAGIDFDEVFAPVSKHATLRAFLSVVAVRDLELHQLDVKTAFLNGELEDDDLHVAQLPGYEQGGRDTACRLNKALYGLRQASRTWYERLRSELKAMGFKPSESDPGLFVKEEDGDRV-FLLVYVDDLLIAAMKLETVAQIKSRLMSKFEIRDLGEARFFLGYEIERDRAARTLKLSQKRYAETVLAKFGM 771          
BLAST of mRNA_H-paniculata_contig3045.8249.1 vs. uniprot
Match: A0A6G0J2S8_LARCR (Copia protein Gag-int-pol protein Copia VLP protein Copia protease n=1 Tax=Larimichthys crocea TaxID=215358 RepID=A0A6G0J2S8_LARCR)

HSP 1 Score: 130 bits (327), Expect = 6.610e-31
Identity = 79/270 (29.26%), Postives = 136/270 (50.37%), Query Frame = 1
Query:   10 EPRNHREAQASSERKDWKRAEEVEMQGLIDNGVWTQVECPKNNLVVSTMMMMIYKRKIREDGNVEKYKCRLVGHGNR*ITGVHFQEALCPAPAAASTKMMLSLAAIQDWELRNVYFEHAYLQALIGQEIFVEIPVIYRE--FRGAVWRLDKAIYVWVQAGRCWSMEATADFTAKGSEQSHADRCMFHKIVDGEVVAVIIIYADNLLISTKGPKIAAEFLADLRSDHKLKELRDARYYLGCHTTRDRKKRKINIDQHLYARSMAERFGITK 813
            EP   +EA  SS  K+WK A ++E + L++N  W  VE PK+   +      ++K K   DG VE+YKCRLV  G     GV + E   P    +S + +LS A   +  +  +    A+L   + +EI++E P  Y +      V +L K+IY   Q+ RCWS   T      G  QS +D C+F +    + + ++ +Y D+L++ T+  +   E    L+  +K+K++ +  Y LG    +D+    + + Q  Y  ++ +++G+ K
Sbjct:  136 EPTTMKEAMLSSNAKEWKEAADLEYESLLENETWDLVELPKDRKPIG--QRWVFKVKHHSDGEVERYKCRLVAKGYSQNYGVDYDETFSPVVRFSSIRTLLSFAVQNNLHVHQMDVVTAFLNGHLEEEIYMEQPDGYIKPGQEHLVCKLKKSIYGLKQSPRCWSKTFTESMKDIGFNQSTSDPCVFVRA--RQELEILAVYVDDLILITESLESMTELKVALKKKYKMKDMGELSYILGISVIQDKTNNSVYLHQKHYIEAVLQKYGMDK 401          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3045.8249.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0C2WN23_AMAMK2.340e-3428.73Integrase catalytic domain-containing protein (Fra... [more]
A0A4S4KBB0_9APHY2.110e-3330.48Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A401GYH9_9APHY3.680e-3331.84Uncharacterized protein n=6 Tax=Sparassis crispa T... [more]
A0A2R6NZJ8_9APHY4.940e-3330.86Integrase catalytic domain-containing protein n=1 ... [more]
A0A284QR88_ARMOS4.250e-3230.94Uncharacterized protein n=2 Tax=Armillaria TaxID=4... [more]
A0A2R6NJS8_9APHY5.500e-3230.37Integrase catalytic domain-containing protein n=1 ... [more]
A0A1C7MSU6_GRIFR2.250e-3131.20Retrovirus-related Pol polyprotein from transposon... [more]
A0A0J7KG03_LASNI4.440e-3133.46Retrovirus-related pol polyprotein from transposon... [more]
A0A150G7P2_GONPE5.680e-3131.00Integrase catalytic domain-containing protein n=1 ... [more]
A0A6G0J2S8_LARCR6.610e-3129.26Copia protein Gag-int-pol protein Copia VLP protei... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3045contigH-paniculata_contig3045:99..911 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score77.8
Seed ortholog evalue5.5e-12
Seed eggNOG ortholog4558.Sb08g015513.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs37YXJ@33090,3GHMT@35493,3MAH5@4447,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelLiliopsida
Best eggNOG OGNA|NA|NA
Exons1
Model size813
Cds size510
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929934.5309474-CDS-H-paniculata_contig3045:98..6081622929934.5309474-CDS-H-paniculata_contig3045:98..608Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3045 99..608 -
1691481076.356634-CDS-H-paniculata_contig3045:98..6081691481076.356634-CDS-H-paniculata_contig3045:98..608Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3045 99..608 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929934.5470524-UTR-H-paniculata_contig3045:608..9111622929934.5470524-UTR-H-paniculata_contig3045:608..911Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3045 609..911 -
1691481076.3661783-UTR-H-paniculata_contig3045:608..9111691481076.3661783-UTR-H-paniculata_contig3045:608..911Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3045 609..911 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3045.8249.1prot_H-paniculata_contig3045.8249.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3045 99..608 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3045.8249.1

>prot_H-paniculata_contig3045.8249.1 ID=prot_H-paniculata_contig3045.8249.1|Name=mRNA_H-paniculata_contig3045.8249.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=170bp
MMLSLAAIQDWELRNVYFEHAYLQALIGQEIFVEIPVIYREFRGAVWRLD
KAIYVWVQAGRCWSMEATADFTAKGSEQSHADRCMFHKIVDGEVVAVIII
YADNLLISTKGPKIAAEFLADLRSDHKLKELRDARYYLGCHTTRDRKKRK
INIDQHLYARSMAERFGITK
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mRNA from alignment at H-paniculata_contig3045:99..911-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3045.8249.1 ID=mRNA_H-paniculata_contig3045.8249.1|Name=mRNA_H-paniculata_contig3045.8249.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=813bp|location=Sequence derived from alignment at H-paniculata_contig3045:99..911- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTCCCCGTGGAACCCAGGAATCACCGGGAGGCGCAGGCGTCGTCGGAGAG GAAAGACTGGAAAAGAGCGGAGGAAGTCGAGATGCAAGGTCTCATCGACA ACGGGGTTTGGACGCAGGTCGAGTGCCCGAAGAACAACCTGGTCGTGAGC ACGATGATGATGATGATCTATAAAAGGAAAATCCGCGAGGACGGTAACGT GGAGAAATACAAATGCCGCCTGGTTGGCCACGGGAACCGCTAGATCACGG GCGTCCACTTCCAGGAAGCTTTGTGCCCTGCACCCGCAGCGGCCAGCACA AAAATGATGTTGTCGCTTGCGGCAATCCAGGACTGGGAGCTTCGCAACGT CTACTTTGAACACGCGTATCTGCAGGCGCTTATCGGCCAGGAGATTTTCG TCGAAATTCCCGTAATATACCGGGAGTTCCGAGGAGCGGTGTGGCGCCTC GACAAGGCAATCTACGTGTGGGTGCAAGCCGGCAGATGCTGGAGTATGGA GGCTACCGCGGACTTCACGGCGAAAGGGTCAGAGCAATCGCACGCAGACC GATGCATGTTCCACAAGATCGTGGACGGGGAGGTGGTCGCAGTGATCATT ATATACGCGGACAACCTGCTGATCAGCACCAAGGGACCCAAAATCGCGGC CGAGTTCCTGGCGGACCTGCGATCGGATCATAAGCTCAAAGAGCTGAGAG ATGCAAGGTACTATTTAGGATGCCACACCACCCGCGATAGGAAAAAGAGG AAGATCAACATCGATCAGCACCTCTACGCGAGGTCCATGGCCGAGCGTTT CGGGATAACCAAG
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Coding sequence (CDS) from alignment at H-paniculata_contig3045:99..911-

>mRNA_H-paniculata_contig3045.8249.1 ID=mRNA_H-paniculata_contig3045.8249.1|Name=mRNA_H-paniculata_contig3045.8249.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1020bp|location=Sequence derived from alignment at H-paniculata_contig3045:99..911- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATGTTGTCGCTTGCGGCAATCCAGGACTGGGAGCTTCGCAACGTCTA
CTTTGAACACGCGTATCTGCAGGCGCTTATCGGCCAGGAGATTTTCGTCG
AAATTCCCGTAATATACCGGGAGTTCCGAGGAGCGGTGTGGCGCCTCGAC
AAGGCAATCTACGTGTGGGTGCAAGCCGGCAGATGCTGGAGTATGGAGGC
TACCGCGGACTTCACGGCGAAAGGGTCAGAGCAATCGCACGCAGACCGAT
GCATGTTCCACAAGATCGTGGACGGGGAGGTGGTCGCAGTGATCATTATA
TACGCGGACAACCTGCTGATCAGCACCAAGGGACCCAAAATCGCGGCCGA
GTTCCTGGCGGACCTGCGATCGGATCATAAGCTCAAAGAGCTGAGAGATG
CAAGGTACTATTTAGGATGCCACACCACCCGCGATAGGAAAAAGAGGAAG
ATCAACATCGATCAGCACCTCTACGCGAGGTCCATGGCCGAGCGTTTCGG
GATAACCAAGATGATGTTGTCGCTTGCGGCAATCCAGGACTGGGAGCTTC
GCAACGTCTACTTTGAACACGCGTATCTGCAGGCGCTTATCGGCCAGGAG
ATTTTCGTCGAAATTCCCGTAATATACCGGGAGTTCCGAGGAGCGGTGTG
GCGCCTCGACAAGGCAATCTACGTGTGGGTGCAAGCCGGCAGATGCTGGA
GTATGGAGGCTACCGCGGACTTCACGGCGAAAGGGTCAGAGCAATCGCAC
GCAGACCGATGCATGTTCCACAAGATCGTGGACGGGGAGGTGGTCGCAGT
GATCATTATATACGCGGACAACCTGCTGATCAGCACCAAGGGACCCAAAA
TCGCGGCCGAGTTCCTGGCGGACCTGCGATCGGATCATAAGCTCAAAGAG
CTGAGAGATGCAAGGTACTATTTAGGATGCCACACCACCCGCGATAGGAA
AAAGAGGAAGATCAACATCGATCAGCACCTCTACGCGAGGTCCATGGCCG
AGCGTTTCGGGATAACCAAG
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