mRNA_H-paniculata_contig30190.8187.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig30190.8187.1 vs. uniprot
Match: A0A6H5KJN3_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJN3_9PHAE) HSP 1 Score: 93.2 bits (230), Expect = 1.860e-20 Identity = 44/74 (59.46%), Postives = 58/74 (78.38%), Query Frame = 1
Query: 1 SPFQRLNGVEPDLSHLRVVGARAFVHIEAQTKKLGAKAFEAVMVGYAFNSKGWRLWNAQNRRVVESRNVVFIET 222
+P++ L G + L HLRVVGARAFVH E TKKL ++A+E +VGY+ +SK +R++NAQ RRV ESRNV+FIET
Sbjct: 785 TPYKALFGTDAHLGHLRVVGARAFVHEETHTKKLDSRAWEGRLVGYSLDSKSYRIYNAQTRRVRESRNVIFIET 858
BLAST of mRNA_H-paniculata_contig30190.8187.1 vs. uniprot
Match: A0A6H5JYB5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYB5_9PHAE) HSP 1 Score: 93.2 bits (230), Expect = 1.870e-20 Identity = 44/74 (59.46%), Postives = 58/74 (78.38%), Query Frame = 1
Query: 1 SPFQRLNGVEPDLSHLRVVGARAFVHIEAQTKKLGAKAFEAVMVGYAFNSKGWRLWNAQNRRVVESRNVVFIET 222
+P++ L G + L HLRVVGARAFVH E TKKL ++A+E +VGY+ +SK +R++NAQ RRV ESRNV+FIET
Sbjct: 691 TPYKALFGTDAHLGHLRVVGARAFVHEETHTKKLDSRAWEGRLVGYSLDSKSYRIYNAQTRRVRESRNVIFIET 764
BLAST of mRNA_H-paniculata_contig30190.8187.1 vs. uniprot
Match: A0A6H5J842_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J842_9PHAE) HSP 1 Score: 93.2 bits (230), Expect = 1.880e-20 Identity = 44/74 (59.46%), Postives = 58/74 (78.38%), Query Frame = 1
Query: 1 SPFQRLNGVEPDLSHLRVVGARAFVHIEAQTKKLGAKAFEAVMVGYAFNSKGWRLWNAQNRRVVESRNVVFIET 222
+P++ L G + L HLRVVGARAFVH E TKKL ++A+E +VGY+ +SK +R++NAQ RRV ESRNV+FIET
Sbjct: 1014 TPYKALFGTDAHLGHLRVVGARAFVHEETHTKKLDSRAWEGRLVGYSLDSKSYRIYNAQTRRVRESRNVIFIET 1087
BLAST of mRNA_H-paniculata_contig30190.8187.1 vs. uniprot
Match: A0A6H5KMG0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMG0_9PHAE) HSP 1 Score: 90.5 bits (223), Expect = 1.630e-19 Identity = 43/74 (58.11%), Postives = 57/74 (77.03%), Query Frame = 1
Query: 1 SPFQRLNGVEPDLSHLRVVGARAFVHIEAQTKKLGAKAFEAVMVGYAFNSKGWRLWNAQNRRVVESRNVVFIET 222
+P++ L G + L H RVVGARAFVH E TKKL ++A+E +VGY+ +SK +R++NAQ RRV ESRNV+FIET
Sbjct: 41 TPYKALFGTDAHLGHPRVVGARAFVHEETHTKKLDSRAWEGRLVGYSLDSKSYRIYNAQTRRVRESRNVIFIET 114
BLAST of mRNA_H-paniculata_contig30190.8187.1 vs. uniprot
Match: A0A6H5KNH5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNH5_9PHAE) HSP 1 Score: 84.0 bits (206), Expect = 3.290e-17 Identity = 41/72 (56.94%), Postives = 53/72 (73.61%), Query Frame = 1
Query: 7 FQRLNGVEPDLSHLRVVGARAFVHIEAQTKKLGAKAFEAVMVGYAFNSKGWRLWNAQNRRVVESRNVVFIET 222
++ L G + L HLRVVGARAFVH E TKKL ++A E +VGY+ +SK +R++NAQ RV ESRN +FIET
Sbjct: 232 YKALFGTDAHLGHLRVVGARAFVHEETHTKKLDSRACEGRLVGYSLDSKSYRIYNAQTTRVRESRNDIFIET 303
BLAST of mRNA_H-paniculata_contig30190.8187.1 vs. uniprot
Match: A0A6H5KL37_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL37_9PHAE) HSP 1 Score: 83.2 bits (204), Expect = 6.100e-17 Identity = 39/74 (52.70%), Postives = 56/74 (75.68%), Query Frame = 1
Query: 1 SPFQRLNGVEPDLSHLRVVGARAFVHIEAQTKKLGAKAFEAVMVGYAFNSKGWRLWNAQNRRVVESRNVVFIET 222
+P++ L G + L HLRV+G+RAFVH E T+KL +A+E +VGY+ +SK +R++N++ RRV SRNVVFIET
Sbjct: 255 TPYKALYGKDAYLGHLRVIGSRAFVHEETHTRKLEHRAWEGRLVGYSMDSKSYRIYNSETRRVRVSRNVVFIET 328
BLAST of mRNA_H-paniculata_contig30190.8187.1 vs. uniprot
Match: A0A6H5JYJ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYJ5_9PHAE) HSP 1 Score: 78.6 bits (192), Expect = 1.290e-16 Identity = 37/74 (50.00%), Postives = 52/74 (70.27%), Query Frame = 1
Query: 1 SPFQRLNGVEPDLSHLRVVGARAFVHIEAQTKKLGAKAFEAVMVGYAFNSKGWRLWNAQNRRVVESRNVVFIET 222
+P+ +L+ PDLS LRV+GARAF H E KKL +AFE + G+ +S+ +R++N+ N VVESRNV FIE+
Sbjct: 25 TPYSKLHNKSPDLSGLRVIGARAFAHHERYRKKLDDRAFEGKLCGFGLDSQTYRVFNSSNGAVVESRNVTFIES 98
BLAST of mRNA_H-paniculata_contig30190.8187.1 vs. uniprot
Match: A0A6H5KQ40_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ40_9PHAE) HSP 1 Score: 77.0 bits (188), Expect = 1.600e-15 Identity = 37/74 (50.00%), Postives = 51/74 (68.92%), Query Frame = 1
Query: 1 SPFQRLNGVEPDLSHLRVVGARAFVHIEAQTKKLGAKAFEAVMVGYAFNSKGWRLWNAQNRRVVESRNVVFIET 222
+P+ +L+ PDLS LRV+GARAFVH E KKL +AFE + G+ +S+ +R+ N N VVESRN+ FIE+
Sbjct: 100 TPYSKLHNKSPDLSGLRVIGARAFVHHERYRKKLDDRAFEGKLCGFGLDSQTYRVLNPSNGAVVESRNLTFIES 173
BLAST of mRNA_H-paniculata_contig30190.8187.1 vs. uniprot
Match: A0A6H5JV56_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV56_9PHAE) HSP 1 Score: 79.0 bits (193), Expect = 1.880e-15 Identity = 34/73 (46.58%), Postives = 52/73 (71.23%), Query Frame = 1
Query: 1 SPFQRLNGVEPDLSHLRVVGARAFVHIEAQTKKLGAKAFEAVMVGYAFNSKGWRLWNAQNRRVVESRNVVFIE 219
+P+ R+ G + +LS LR++G RAFVH+E T KL KA+E ++VGY +S ++++N + RR+ SRNV FIE
Sbjct: 384 TPYYRMFGKQAELSFLRIIGCRAFVHVEGHTNKLQPKAWEGILVGYNSDSPSFQVYNRETRRITSSRNVTFIE 456
BLAST of mRNA_H-paniculata_contig30190.8187.1 vs. uniprot
Match: A0A6H5JRJ1_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRJ1_9PHAE) HSP 1 Score: 79.0 bits (193), Expect = 1.890e-15 Identity = 38/74 (51.35%), Postives = 51/74 (68.92%), Query Frame = 1
Query: 1 SPFQRLNGVEPDLSHLRVVGARAFVHIEAQTKKLGAKAFEAVMVGYAFNSKGWRLWNAQNRRVVESRNVVFIET 222
+P+ +L+ PDLS LRV+GARAFVH E KKL +AFE + G+ +S+ +R+ N N VVESRNV FIE+
Sbjct: 257 TPYSKLHNKSPDLSRLRVIGARAFVHQERYRKKLDDRAFEGKLCGFGLDSQTYRVLNPSNGAVVESRNVTFIES 330 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig30190.8187.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig30190.8187.1 >prot_H-paniculata_contig30190.8187.1 ID=prot_H-paniculata_contig30190.8187.1|Name=mRNA_H-paniculata_contig30190.8187.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=74bp SPFQRLNGVEPDLSHLRVVGARAFVHIEAQTKKLGAKAFEAVMVGYAFNSback to top mRNA from alignment at H-paniculata_contig30190:5..226+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig30190.8187.1 ID=mRNA_H-paniculata_contig30190.8187.1|Name=mRNA_H-paniculata_contig30190.8187.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=222bp|location=Sequence derived from alignment at H-paniculata_contig30190:5..226+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig30190:5..226+ >mRNA_H-paniculata_contig30190.8187.1 ID=mRNA_H-paniculata_contig30190.8187.1|Name=mRNA_H-paniculata_contig30190.8187.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=444bp|location=Sequence derived from alignment at H-paniculata_contig30190:5..226+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |