mRNA_H-paniculata_contig30190.8187.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig30190.8187.1
Unique NamemRNA_H-paniculata_contig30190.8187.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig30190.8187.1 vs. uniprot
Match: A0A6H5KJN3_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJN3_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 1.860e-20
Identity = 44/74 (59.46%), Postives = 58/74 (78.38%), Query Frame = 1
Query:    1 SPFQRLNGVEPDLSHLRVVGARAFVHIEAQTKKLGAKAFEAVMVGYAFNSKGWRLWNAQNRRVVESRNVVFIET 222
            +P++ L G +  L HLRVVGARAFVH E  TKKL ++A+E  +VGY+ +SK +R++NAQ RRV ESRNV+FIET
Sbjct:  785 TPYKALFGTDAHLGHLRVVGARAFVHEETHTKKLDSRAWEGRLVGYSLDSKSYRIYNAQTRRVRESRNVIFIET 858          
BLAST of mRNA_H-paniculata_contig30190.8187.1 vs. uniprot
Match: A0A6H5JYB5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYB5_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 1.870e-20
Identity = 44/74 (59.46%), Postives = 58/74 (78.38%), Query Frame = 1
Query:    1 SPFQRLNGVEPDLSHLRVVGARAFVHIEAQTKKLGAKAFEAVMVGYAFNSKGWRLWNAQNRRVVESRNVVFIET 222
            +P++ L G +  L HLRVVGARAFVH E  TKKL ++A+E  +VGY+ +SK +R++NAQ RRV ESRNV+FIET
Sbjct:  691 TPYKALFGTDAHLGHLRVVGARAFVHEETHTKKLDSRAWEGRLVGYSLDSKSYRIYNAQTRRVRESRNVIFIET 764          
BLAST of mRNA_H-paniculata_contig30190.8187.1 vs. uniprot
Match: A0A6H5J842_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J842_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 1.880e-20
Identity = 44/74 (59.46%), Postives = 58/74 (78.38%), Query Frame = 1
Query:    1 SPFQRLNGVEPDLSHLRVVGARAFVHIEAQTKKLGAKAFEAVMVGYAFNSKGWRLWNAQNRRVVESRNVVFIET 222
            +P++ L G +  L HLRVVGARAFVH E  TKKL ++A+E  +VGY+ +SK +R++NAQ RRV ESRNV+FIET
Sbjct: 1014 TPYKALFGTDAHLGHLRVVGARAFVHEETHTKKLDSRAWEGRLVGYSLDSKSYRIYNAQTRRVRESRNVIFIET 1087          
BLAST of mRNA_H-paniculata_contig30190.8187.1 vs. uniprot
Match: A0A6H5KMG0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMG0_9PHAE)

HSP 1 Score: 90.5 bits (223), Expect = 1.630e-19
Identity = 43/74 (58.11%), Postives = 57/74 (77.03%), Query Frame = 1
Query:    1 SPFQRLNGVEPDLSHLRVVGARAFVHIEAQTKKLGAKAFEAVMVGYAFNSKGWRLWNAQNRRVVESRNVVFIET 222
            +P++ L G +  L H RVVGARAFVH E  TKKL ++A+E  +VGY+ +SK +R++NAQ RRV ESRNV+FIET
Sbjct:   41 TPYKALFGTDAHLGHPRVVGARAFVHEETHTKKLDSRAWEGRLVGYSLDSKSYRIYNAQTRRVRESRNVIFIET 114          
BLAST of mRNA_H-paniculata_contig30190.8187.1 vs. uniprot
Match: A0A6H5KNH5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNH5_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 3.290e-17
Identity = 41/72 (56.94%), Postives = 53/72 (73.61%), Query Frame = 1
Query:    7 FQRLNGVEPDLSHLRVVGARAFVHIEAQTKKLGAKAFEAVMVGYAFNSKGWRLWNAQNRRVVESRNVVFIET 222
            ++ L G +  L HLRVVGARAFVH E  TKKL ++A E  +VGY+ +SK +R++NAQ  RV ESRN +FIET
Sbjct:  232 YKALFGTDAHLGHLRVVGARAFVHEETHTKKLDSRACEGRLVGYSLDSKSYRIYNAQTTRVRESRNDIFIET 303          
BLAST of mRNA_H-paniculata_contig30190.8187.1 vs. uniprot
Match: A0A6H5KL37_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL37_9PHAE)

HSP 1 Score: 83.2 bits (204), Expect = 6.100e-17
Identity = 39/74 (52.70%), Postives = 56/74 (75.68%), Query Frame = 1
Query:    1 SPFQRLNGVEPDLSHLRVVGARAFVHIEAQTKKLGAKAFEAVMVGYAFNSKGWRLWNAQNRRVVESRNVVFIET 222
            +P++ L G +  L HLRV+G+RAFVH E  T+KL  +A+E  +VGY+ +SK +R++N++ RRV  SRNVVFIET
Sbjct:  255 TPYKALYGKDAYLGHLRVIGSRAFVHEETHTRKLEHRAWEGRLVGYSMDSKSYRIYNSETRRVRVSRNVVFIET 328          
BLAST of mRNA_H-paniculata_contig30190.8187.1 vs. uniprot
Match: A0A6H5JYJ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYJ5_9PHAE)

HSP 1 Score: 78.6 bits (192), Expect = 1.290e-16
Identity = 37/74 (50.00%), Postives = 52/74 (70.27%), Query Frame = 1
Query:    1 SPFQRLNGVEPDLSHLRVVGARAFVHIEAQTKKLGAKAFEAVMVGYAFNSKGWRLWNAQNRRVVESRNVVFIET 222
            +P+ +L+   PDLS LRV+GARAF H E   KKL  +AFE  + G+  +S+ +R++N+ N  VVESRNV FIE+
Sbjct:   25 TPYSKLHNKSPDLSGLRVIGARAFAHHERYRKKLDDRAFEGKLCGFGLDSQTYRVFNSSNGAVVESRNVTFIES 98          
BLAST of mRNA_H-paniculata_contig30190.8187.1 vs. uniprot
Match: A0A6H5KQ40_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ40_9PHAE)

HSP 1 Score: 77.0 bits (188), Expect = 1.600e-15
Identity = 37/74 (50.00%), Postives = 51/74 (68.92%), Query Frame = 1
Query:    1 SPFQRLNGVEPDLSHLRVVGARAFVHIEAQTKKLGAKAFEAVMVGYAFNSKGWRLWNAQNRRVVESRNVVFIET 222
            +P+ +L+   PDLS LRV+GARAFVH E   KKL  +AFE  + G+  +S+ +R+ N  N  VVESRN+ FIE+
Sbjct:  100 TPYSKLHNKSPDLSGLRVIGARAFVHHERYRKKLDDRAFEGKLCGFGLDSQTYRVLNPSNGAVVESRNLTFIES 173          
BLAST of mRNA_H-paniculata_contig30190.8187.1 vs. uniprot
Match: A0A6H5JV56_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV56_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 1.880e-15
Identity = 34/73 (46.58%), Postives = 52/73 (71.23%), Query Frame = 1
Query:    1 SPFQRLNGVEPDLSHLRVVGARAFVHIEAQTKKLGAKAFEAVMVGYAFNSKGWRLWNAQNRRVVESRNVVFIE 219
            +P+ R+ G + +LS LR++G RAFVH+E  T KL  KA+E ++VGY  +S  ++++N + RR+  SRNV FIE
Sbjct:  384 TPYYRMFGKQAELSFLRIIGCRAFVHVEGHTNKLQPKAWEGILVGYNSDSPSFQVYNRETRRITSSRNVTFIE 456          
BLAST of mRNA_H-paniculata_contig30190.8187.1 vs. uniprot
Match: A0A6H5JRJ1_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRJ1_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 1.890e-15
Identity = 38/74 (51.35%), Postives = 51/74 (68.92%), Query Frame = 1
Query:    1 SPFQRLNGVEPDLSHLRVVGARAFVHIEAQTKKLGAKAFEAVMVGYAFNSKGWRLWNAQNRRVVESRNVVFIET 222
            +P+ +L+   PDLS LRV+GARAFVH E   KKL  +AFE  + G+  +S+ +R+ N  N  VVESRNV FIE+
Sbjct:  257 TPYSKLHNKSPDLSRLRVIGARAFVHQERYRKKLDDRAFEGKLCGFGLDSQTYRVLNPSNGAVVESRNVTFIES 330          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig30190.8187.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KJN3_9PHAE1.860e-2059.46Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5JYB5_9PHAE1.870e-2059.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J842_9PHAE1.880e-2059.46Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5KMG0_9PHAE1.630e-1958.11Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KNH5_9PHAE3.290e-1756.94Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KL37_9PHAE6.100e-1752.70Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JYJ5_9PHAE1.290e-1650.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KQ40_9PHAE1.600e-1550.00Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5JV56_9PHAE1.880e-1546.58Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JRJ1_9PHAE1.890e-1551.35Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig30190contigH-paniculata_contig30190:5..226 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score73.6
Seed ortholog evalue4.5e-11
Seed eggNOG ortholog7425.NV17383-PA
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs38DPC@33154,3BGB6@33208,3D5G4@33213,3SKEY@50557,41ZUZ@6656,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelInsecta
Best eggNOG OGNA|NA|NA
Exons1
Model size222
Cds size222
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929926.4640586-CDS-H-paniculata_contig30190:4..2261622929926.4640586-CDS-H-paniculata_contig30190:4..226Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig30190 5..226 +
1691481072.6254785-CDS-H-paniculata_contig30190:4..2261691481072.6254785-CDS-H-paniculata_contig30190:4..226Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig30190 5..226 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig30190.8187.1prot_H-paniculata_contig30190.8187.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig30190 5..226 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig30190.8187.1

>prot_H-paniculata_contig30190.8187.1 ID=prot_H-paniculata_contig30190.8187.1|Name=mRNA_H-paniculata_contig30190.8187.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=74bp
SPFQRLNGVEPDLSHLRVVGARAFVHIEAQTKKLGAKAFEAVMVGYAFNS
KGWRLWNAQNRRVVESRNVVFIET
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mRNA from alignment at H-paniculata_contig30190:5..226+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig30190.8187.1 ID=mRNA_H-paniculata_contig30190.8187.1|Name=mRNA_H-paniculata_contig30190.8187.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=222bp|location=Sequence derived from alignment at H-paniculata_contig30190:5..226+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCCCCCTTTCAACGCCTCAACGGTGTCGAGCCCGACCTGTCGCATCTTCG TGTGGTCGGGGCGCGTGCTTTCGTACACATCGAAGCGCAGACCAAGAAGC TTGGGGCTAAGGCGTTTGAGGCGGTCATGGTGGGGTATGCATTCAACAGC AAAGGTTGGAGACTGTGGAATGCCCAAAACAGGAGAGTCGTTGAAAGCAG GAATGTCGTCTTCATCGAAACC
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Coding sequence (CDS) from alignment at H-paniculata_contig30190:5..226+

>mRNA_H-paniculata_contig30190.8187.1 ID=mRNA_H-paniculata_contig30190.8187.1|Name=mRNA_H-paniculata_contig30190.8187.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=444bp|location=Sequence derived from alignment at H-paniculata_contig30190:5..226+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCCCCCTTTCAACGCCTCAACGGTGTCGAGCCCGACCTGTCGCATCTTCG
TGTGGTCGGGGCGCGTGCTTTCGTACACATCGAAGCGCAGACCAAGAAGC
TTGGGGCTAAGGCGTTTGAGGCGGTCATGGTGGGGTATGCATTCAACAGC
AAAGGTTGGAGACTGTGGAATGCCCAAAACAGGAGAGTCGTTGAAAGCAG
GAATGTCGTCTTCATCGAAACCTCCCCCTTTCAACGCCTCAACGGTGTCG
AGCCCGACCTGTCGCATCTTCGTGTGGTCGGGGCGCGTGCTTTCGTACAC
ATCGAAGCGCAGACCAAGAAGCTTGGGGCTAAGGCGTTTGAGGCGGTCAT
GGTGGGGTATGCATTCAACAGCAAAGGTTGGAGACTGTGGAATGCCCAAA
ACAGGAGAGTCGTTGAAAGCAGGAATGTCGTCTTCATCGAAACC
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