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Homology
BLAST of mRNA_H-paniculata_contig3012.8173.1 vs. uniprot
Match: A0A6H5JQP5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQP5_9PHAE) HSP 1 Score: 65.5 bits (158), Expect = 5.070e-8 Identity = 40/63 (63.49%), Postives = 47/63 (74.60%), Query Frame = 1
Query: 628 MDQGP-MNSMPPAPIFGVADGGSGT--MSN-KFINIDEIFADCFIEGENNDLLEMESGPTGAE 804
MDQ +NSMPPAPIFGV GG G M N KFINIDEIFADCF++G++ DLL + G TGA+
Sbjct: 1 MDQTTSVNSMPPAPIFGVTPGGDGNGGMGNSKFINIDEIFADCFMDGDS-DLLGL--GGTGAQ 60
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | other localisation |
| Exons | 2 |
| Model size | 1232 |
| Cds size | 603 |
| Stop | 0 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig3012.8173.1 >prot_H-paniculata_contig3012.8173.1 ID=prot_H-paniculata_contig3012.8173.1|Name=mRNA_H-paniculata_contig3012.8173.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=201bp
MDQGPMNSMPPAPIFGVADGGSGTMSNKFINIDEIFADCFIEGENNDLLE MESGPTGAEPAGGGDGTSGGAIGSFGGVGGGGNGPSGQDIMGGVKSMGAF GSGIGIGGVMGEAGVAGQSGGGGSGGILQQQQQQQQRRGDLHRGNNQLVG FSPFSAADRGTTTAPTTAGVGSSGGVLSGRRTSGAARAGTGGSGAAGGVS G back to topmRNA from alignment at H-paniculata_contig3012:8525..16260+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig3012.8173.1 ID=mRNA_H-paniculata_contig3012.8173.1|Name=mRNA_H-paniculata_contig3012.8173.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=7736bp|location=Sequence derived from alignment at H-paniculata_contig3012:8525..16260+ (Halopteris paniculata Hal_grac_a_UBK monoicous) ATTTTGGCGTCGCAGCCTCATCAAATTTTCAACGCAGGGGAGGGTTTGGT
GAACCAAAAGGTGAGGTTGAAGGTTTGATTTTTTTCGAGCAAAACAGAGA
GAACTGGCGTACTACTGTCTGTATGTACAATATGATGGGCATATGAATAT
TTATGAAAAATACTCGGTCCTAGAGAGCTCAATTCTCCTCTTGTGTCGGA
GCTCAGCAAACTTCCTCAACAACAACTCCGCCCTGTACAGGTCGCCATTC
GCCCCCTGCCCATAGTCTCCACTGTCTTTGGTTCTTGTCTAGTTGCATGT
GTCCGGTTGGGGATCGATCAGGGCACGGCGCGCGGGGGGGTAAATTTGAA
CGGCGGGGCAAGGTCGTGGTGGTTCCCTGCTTCCCCTTTATCCAATAAAC
TATATGTACTTGCAGTTTTGTCCCTATTTTAGCTCACACCAGTTGGTATC
GAAGCGGGTTGGTTTCCGCTCTCCCAAGTTGAAATTGATGTTTTGACGTC
AACACGTCGCTGCTCTGTACCGCGACGAGTTCCACCACTGCGTACCTCCG
GCTGGTTTCTTCACGCAGCACGCTTTCGACCTTGATTGTGGATGTTGGTG
TCGGCGAGGAAGATGTGTCTACCAGAGTAGAAAAGTTGTCGATCATTTCT
TTGGGTGCAAAGATCATGTACACCTACTTTTTACTCCTGTTTTACACTTC
CGCTGAGCGCATTTTTTAAGATGTTTTTGCTGGCTGGCTCCTCCCTCCTT
TTCTTCAATCGAGGCAGCACCAATCCTTTCATGTATGTAAATACAATACA
CACATACCACAGGAAGGAATGGTTTCAATTGTGTTGGGTACGGGTCAACA
GTGACCAATCATGCGCCGGTTGATACGAAAGGCCGTGTTTCACAATGTTA
TGCGTTTATCTCCATTAGTTGCTGCCTCGATAGTTCAATGATGTGTTGCT
GTTTTTGAAGTGGTGTGTGTGTTTTTTTATGTTTTGTAGTGGTTCATGGG
GCGCAAATTTGCTACTTGCTGTTAGATGCAAGTTAATCTGCACGGTGTAC
ATATTTTTCCTATATCCTCTCTTTTCCCCATTTCTTTCCTTCGAAGTCAA
GCGCGCTTGGACTAGAAAAGGTATACGGCATCATGTTGGGACAGCTCTCG
GTAGAGATTCCAAAGACATACTGGGGCCATAAGTTCATAGACGAGGCTGA
AAACGATTCGAATTCGAATGATTTTGCACTCGAACTCCAACTACTAAAGT
TGGTTGCTTCCTGTGTGCGTACGGTGTACGCCTTGTGTGTGCGCACTCCA
TTGTCCACGCCCCATGGAAAAAACGCCGAAAGAAACGAACGAGAAGGGTT
GCATATAGCATCAAAATCAACGCAGTAAGAGTATTCAGGGTGTTGCCGCC
GAGTACCTTCTGCACCGGGTCTTGTCCAAGTCACCGGAGGTACACAGACT
GTTTTTGTTCTACTCGAGTTGGAAGGTTCATATTTCTCGTCCGCTTGGGC
CGATTTTTTGCGAGAAAATAGTACACGGTCAATGTCGCCACTGGTACACC
CTATTGTGTCCACTATGAGGTGGGCAGTGTGAACGGTATCGATTTCCCTG
ACCATCGTTATTTTTTTGCAGATGTTCTCCTATCTCTAAAAAACATACAT
ACATACATACATCACTTTCACCGACTTCGACTTAATTCGCCGTGCGGCGA
AATTTCCCAGCAAATATGTTACGTTTGTATGGGCGTGGACGTGCACACAG
CCCCCTTCTCCACATACACGCAAGGTTTTGCCGCTGACTCGTTGCCCGCT
TTCTTGTCGCCATGAACTCTTCATCCCCATGTTCAGATCTGGTCAGTCCC
CACAAGACCAGCATCTCAACAGTAGGAAAACGGCACAGTAAGATGAAGAT
ATCAATAATTCTCACGCCAAACAAAGTTATGGTGCGCTGGTAAAACGCGC
TGCCGCTGAAGGTGGCAATAGGTGGCCGCTCGCAGGCTCCCTGTAGGCGA
GACCGAACAGTCTGTCATGGGGCAAAGGACCCACGGGTCAACCGTGGAGT
GCACTTTGATGGCGCAAAATGACTGTTGCTTCGTCGGGTGGGGTCCCGAA
ACTCTAAAGGATGGTGCAGTGGTCGGTACGCCTGCGATATCAAAGCCTTT
CAAATAGCGATCAATTTGGCATGACTGCCACAACGCAAAATCACCGCCGA
CCAGAACTGGACTGTGACGTGACCAAATTTTTTTTTCAAGATTAAAATTA
TAAGAAGGAAGGTATTCCTTTTTCCGTTCCACTGCTTTTTTTTTTTTTTT
TCAATCTCTTCCCCTTTCTTGTAACGTTTCTTGCCCGCCCTCGTCTGGCC
CGAGTAAAATGAAGGAAGGCTCTTCTTGGCTGTTATTGTGCACGGCTGTC
ATGCCCAAAACATTTACCTTTTAAACAATGGTAAGACTAAAACATTTACC
TTTTAAACAATGGTAAGACAGTCTTACGTTGGACAGAAAAAAATCTAGAA
TAACTCCTGGCACTGGAACAATGGTCCCAATGGTTGTAAAAACATCTGCT
CAAAGCAGAACAACGTTTCAAAACGCTGCCGAGTATACTCCCTGTCCCCA
AGGCTGGGTTGTTAAGTTGTAATTTTTCGGGATGACCTCCGAGTTTAAAA
CGGACTGATGTGTTGGATTTCTTTAAATATTTACATTGAATATATATATA
TATATATATATATATATATTTAGACAATTCTGTTCGTAAGAAAGCTCTAG
AATGGTTCCGAAAAATTCGAGCAGACATTATGACAAGTTAAGGTAATATA
CTCCCTTTATCTCATAAGCCTTCCCTTTTAAGGTGTAACTTTTCGGGATG
ACCTCCGAGTTTAAAACGGACTTATGTGTTGGATTTCTTTAAATGTTTTA
CATTGAATATATAGATACATATATTAGACAATTCTGTTTGTAGGGAAGCT
CTAGAATAGTTCCGAAAAATTGGAGCAGACATTATTACAAGTTAAGGTAA
TATACTCCCTTTATCTCATAAGCCTTCCCTTTTAAGGTGTAGCTTTTTGG
GGATGACCTCCGATTACAAAACGAAGTTTTAGCATTTCTGCTCATGAGTA
AGTTCTAAAATGGTCCTGAAAGCATCGGACACCCTGAAAAAATCTAGAAC
ATGCAGACTTTGTTCTGATGTGTTCTTCCTACCTGTGTACGGAGTATGAT
GTCAAGAGTGCAGCAAGATGAACATCTGTCACTGTAATTTATAACTAGTT
CGTCTATCTCCCTTTTTTGTTCCTTGAGTCGTCCGCCGGGCCCGGGAGTC
CGAGAGAGCCTGTGAGGATGGGTATGTAACCGAGGGGGGGGGGGCTGAGG
TTATGCAAAGTACGTTAAGATTCAGTTTGTACATTTTAAGAGGAAAGATG
GATCAATAAAGGGACTCAGCTGGCGCTTCTTCATGTGTTTGTGGACATCA
TGTTATATGGGACACATTTATTCTGTCTTATTATATCAGTTGGATATCAC
GTTTGCAGATTGCAGTGATTGTGGCAAAAGCAAATACACAGAGCTCTAGA
TCTACGTACGAGGGGGGTTTATGGGCTGTGGTATACTGGCTGGTGCTATC
TTTAAAACATGAACACTTGTACAAAAAAATGTATTGCGTATGCAATTATT
TAACTAGCTTCTTAAGTCAAGCCAGTACATGGTCCTAAAATACCAGAATT
TTCTTGTTCGCGATGAATGGATGGATAACGTCTCAAGAAAAATTTCATGC
GTGGGTCCACCTGCAAAAAAACACAGTATAGTGCACGGGCTGCTGTTCTT
TGAACCGGGCTAATATGTTTCAAGCGTCACCATGCTATCTGTAACGCCTA
TCGCTATTTTTATCCCCTCTCTAAGGAGTGTAAAGGTTATTGTTAAGCTC
TTAAACTCACCGCTATATATTCGACAAAAAAAAAACACGAACACGTTGAT
TTGCGAACGCGAAATTATCGGGCTTCGGGCGCGTGCAGCCTGTTTGTCCC
TGTTGGCATCGGGTAACTGACGGCGACAGCAACTGTATAAGCTCGGTTAT
CTTTGCAGAAGACGTACTGGTGTATACCGTACTGTTTGTGTGTTGACGCT
CCCCCTGTGGAAGCAGTAGCACTCGTGAGATGTGCCATATTACCTCCCGC
GAAGATCCATTCGGTTGTAATCGAAACCGAGCGTTTAAATGTTTGGCACA
ACAGTATATGTTTGTTGAAAAACACCCTCGACAGGAGGAAGGTCGCATGA
AGTCAGTCGAATACACAGTTGCGCTTTTATGCACATTGTGCGAAGAGAGC
GCCATCAACTGTTTTGACCATGTCAAGACCAGTTTTTTATTGCACAGGCG
CGACAACATTTGAGATGCCCTATCTGACTGAATTATAGTCCTGTAGGTCA
TTGGGATCAAATCCCCGGCCGATCACTCACCCCCCAAAAGTCAGGTGAAA
CACGAAAGAGTTGCCAGTTTGGTCGGGGGTCAACAAGGTGTGGGGAACCA
TGAGCTATTGATGCGTCTCCTGCGGAGGTCGTTGGCTTCATAATCTAACA
CCGCTTCCCGCGAAGCGGTCGGGTTCCGGGTATACCCCTTGTGAGCCTTG
TTGCAAAAGACGAATATTAGTGAACACGGGGCGGGGGTGAACACTAGAAT
GCCCGTTCGACGGTGTAAATTTAAAATGTAATTCTTTGCATGGAAGTCGC
TGGAGGACAGGTGTTGCACTTTTTGACATCGTGTGTGTGGCATACATTAC
TTGACATGTGTATATACCGCAGTATTGTTTCGTACAAAATCACATATGCA
TTTGATTGTAAAAAACCACGGGGACACAATCGGTGTGTGCTATACACACA
TATTTACACAGAGGGTCATCATTGTGTATTTTTGTGAACAGGAGGGTAGA
AGGCACCTTCGGTCAGCGCAGTGCCTGGTGTTGCTGGTTAATTGTTTCGC
ATAAGAAACAAATTGTGCGTGTGGCAAGCGACTCTTGTCTTACATATATA
TATATATATATATATAACAAGGTTTTTTTTTCCTCGGTCGCATGATAAAA
GGCGTTTCCCAACTGATGCCACTTCTGTTGGCACGCCGTGATTACAGTAT
CTTTTTGTAAGCCCCTCTCCTTCATCTGAGCGTGTAAAAGATCCCTGAGG
AAAAAAAGACGAATAAATTGTCACCGTGGCGATGGTGTAAAGCAACTGCA
AAAACAAGAGCTTTGAAACTCACGATGATTGAACAATCGGCGACGAGCCG
AACAAGTGACAGAAGGGCTGCAATATCCATCCATTCATCATACCGTTATT
TTTAGCGTTTGACGCCGTCTCTCGTGCAGCTGCTGGTAGTTGTAGTATCA
GAAACTCTAAATGGATCCCGGTAAGTACATGAGCTCGGGACATATTTCAG
GTACCACCACCACTATAGCACACTGCGATATATATTTTTATTTTTATATA
TATATATATATATATATATATATATATTGTATTTAGATGCCGAGAATTTG
GTAAAAGATTTGGGCGCCGCGATGTAACAGTTGTTACAGAGAGAAAGTAC
AAACTGTACACAGCGCAATTGCAGTCAGCCAGTCTAGTCACTGACCGGAT
GGTTGTGGACGTGTGTTGGTAGAGTACCCGCAAATCAATTCAATTGGAAT
AATACCTACATGACCGTCCCTCTCCTTGGTAGCCGTGGGGAAACATGATG
TCCTCATCAATGTCGGTGGCTCCTCAGGGCTTCAGCCGCGAACAAAGGAA
TCGCCAGCAGGTCCCCCGCGCCAGCTACCTTCCCAGACGTTTTTGTGGGT
ACAACCAGAAGGAATCGTGATGGAAACGCCAGAAATAGGCCCCCACCCGT
GCATACATTGCGGATAGGAGGGCAGCAGCAGCTACACTTAGTACACTGGG
TATGGTCATGCTTCGGCAGCATTAGTGAACGTAAAGTTGGGCGCAGCGAA
GAGCAGCCCATTTTGTCAGTGCAGTTAAGCTAGCTCTAACCCCAGTTTTG
TTTTGTGGACGAGCAAATATGATTGTACGAGTTCTCGTGGGGCGACCCAC
AACGCGCATCAACAATATTCCGAGAAAAAAACGAGCGGTGACCATTTTCT
TTCATGTTGAGGTGACCTGTATGGCCTGGCCTATGCGTTTAGTTGCTGCC
ATGCACCGTGTCGCTGTTTCCCTCCTTACTTTACTCCCTTGAAAAGGAAC
AAACAAGAAGAAGAAAGGGCGACTCAAATCAATTAATGTGTGTGCACTTT
CGCATGATACCAAGTTACAACCACCAAATACTCCTTTTCGTCCTGTCTCA
CTGCAAGTAGCTTACAAGTGTGCGTGCGTGCGTGTGTGCGTTGACAAGGC
CTTCCTCTCGTTCCTGCCTCGCAGTATCCAATCTTTGTTCGAAATACCTA
CCATATAGAGAGGGCTCTAGAGTATCCGTGCAGATTTTTCCATCCCGGCG
GAATCCCTCGTAGGCGTGCATGTTGGGTTTCTTGTGTCGCATCTGGCATG
TGTTCGGCCCCACCTCACCTCCATTGCTCGCGCTCTCGCCCCCATCCCTC
AACAATTTCGCCAAAGCGTGGGGAAAGGAAGGAAAGAGAAGGTGTCCCTG
CCTTCACCGACGCGCAGGACGGCCAGGTGACCATAGCTCGGAGCAGGGGG
GAACCGCAAAGCTAATTTTGGCGAAGAGAAAGGGAAAGAGAGGAAGAGAG
AGGTCGAGAGATCGAGAGGCGAGAAGGAGCAGGAAAACAGTAGACTGAGA
AAGGGGAAGGGGGTGAGGGCAAAATTAACCAGAAGCAAATAGAACAGAGC
AGCTTCTTTGTTCCCGAGGGCCGTTTTCAATCAATTAAGTGGTGGTCAAA
AAGCAGCGGCAGTCTGCTTTTGTAACCGAAAAAAAACCACATCCCAACGA
AAACAAGGACAATAAACCGTTTTTTAAGTGTTGTGACTGTTTACGCCTTA
TTACGTAATCGCTCACGACATAGCACAACACAAGACAGCTTCTAAAACAC
ACTTTGACGGGTACTACGGGCTAGAACCAGAAAAGAGGAGGACGAAGAAG
AAAGAACAGACGCACCGGTGGACAGGCAGATAGACTTTATCCCCTGGCTC
TTTTCATTTTGTCAAGAATACAGAAACAAATTCATGGACCAGGGCCCGAT
GAACTCCATGCCCCCAGCGCCGATTTTCGGCGTCGCGGATGGAGGCTCGG
GCACGATGAGCAATAAATTCATCAACATCGACGAGATCTTCGCCGACTGT
TTTATAGAAGGCGAGAACAACGATCTTCTAGAGATGGAGTCTGGGCCGAC
GGGAGCAGAACCTGCAGGCGGTGGGGATGGTACATCCGGAGGAGCGATTG
GGAGCTTCGGAGGGGTAGGAGGTGGCGGCAACGGCCCTTCAGGCCAAGAC
ATCATGGGAGGCGTGAAGAGCATGGGAGCCTTCGGCTCCGGGATTGGAAT
AGGCGGGGTGATGGGAGAAGCGGGGGTGGCGGGACAATCAGGGGGCGGTG
GCAGCGGCGGAATACTGCAGCAGCAGCAGCAACAACAACAACGTCGCGGA
GACTTACATCGTGGCAACAACCAACTTGTAGGCTTTTCGCCGTTTAGTGC
GGCTGACAGAGGGACAACAACGGCCCCCACGACGGCAGGAGTTGGCAGCA
GCGGTGGGGTGTTATCAGGGCGGCGAACGAGCGGTGCCGCAAGGGCCGGG
ACCGGAGGCTCAGGAGCAGCGGGGGGGGTTAGCGGT back to topCoding sequence (CDS) from alignment at H-paniculata_contig3012:8525..16260+ >mRNA_H-paniculata_contig3012.8173.1 ID=mRNA_H-paniculata_contig3012.8173.1|Name=mRNA_H-paniculata_contig3012.8173.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1206bp|location=Sequence derived from alignment at H-paniculata_contig3012:8525..16260+ (Halopteris paniculata Hal_grac_a_UBK monoicous) ATGGACCAGGGCCCGATGAACTCCATGCCCCCAGCGCCGATTTTCGGCGT CGCGGATGGAGGCTCGGGCACGATGAGCAATAAATTCATCAACATCGACG AGATCTTCGCCGACTGTTTTATAGAAGGCGAGAACAACGATCTTCTAGAG ATGGAGTCTGGGCCGACGGGAGCAGAACCTGCAGGCGGTGGGGATGGTAC ATCCGGAGGAGCGATTGGGAGCTTCGGAGGGGTAGGAGGTGGCGGCAACG GCCCTTCAGGCCAAGACATCATGGGAGGCGTGAAGAGCATGGGAGCCTTC GGCTCCGGGATTGGAATAGGCGGGGTGATGGGAGAAGCGGGGGTGGCGGG ACAATCAGGGGGCGGTGGCAGCGGCGGAATACTGCAGCAGCAGCAGCAAC AACAACAACGTCGCGGAGACTTACATCGTGGCAACAACCAACTTGTAGGC TTTTCGCCGTTTAGTGCGGCTGACAGAGGGACAACAACGGCCCCCACGAC GGCAGGAGTTGGCAGCAGCGGTGGGGTGTTATCAGGGCGGCGAACGAGCG GTGCCGCAAGGGCCGGGACCGGAGGCTCAGGAGCAGCGGGGGGGGTTAGC GGTATGGACCAGGGCCCGATGAACTCCATGCCCCCAGCGCCGATTTTCGG CGTCGCGGATGGAGGCTCGGGCACGATGAGCAATAAATTCATCAACATCG ACGAGATCTTCGCCGACTGTTTTATAGAAGGCGAGAACAACGATCTTCTA GAGATGGAGTCTGGGCCGACGGGAGCAGAACCTGCAGGCGGTGGGGATGG TACATCCGGAGGAGCGATTGGGAGCTTCGGAGGGGTAGGAGGTGGCGGCA ACGGCCCTTCAGGCCAAGACATCATGGGAGGCGTGAAGAGCATGGGAGCC TTCGGCTCCGGGATTGGAATAGGCGGGGTGATGGGAGAAGCGGGGGTGGC GGGACAATCAGGGGGCGGTGGCAGCGGCGGAATACTGCAGCAGCAGCAGC AACAACAACAACGTCGCGGAGACTTACATCGTGGCAACAACCAACTTGTA GGCTTTTCGCCGTTTAGTGCGGCTGACAGAGGGACAACAACGGCCCCCAC GACGGCAGGAGTTGGCAGCAGCGGTGGGGTGTTATCAGGGCGGCGAACGA GCGGTGCCGCAAGGGCCGGGACCGGAGGCTCAGGAGCAGCGGGGGGGGTT AGCGGT back to top
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