mRNA_H-paniculata_contig11276.816.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig11276.816.1
Unique NamemRNA_H-paniculata_contig11276.816.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig11276.816.1 vs. uniprot
Match: D7FQQ7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQQ7_ECTSI)

HSP 1 Score: 142 bits (358), Expect = 3.050e-39
Identity = 76/89 (85.39%), Postives = 81/89 (91.01%), Query Frame = 1 
Query:    1 RHHMSQESWIPMDLRMKMMRRSMAVIKENVDESMAQGQLVKKEKKRSNRSELEIVKTQEKFGTKHQRPCALCEQSFSEVNLVLAVPFKV 267
            R  MS ESWIP DLRMKM+RR MAVIKENV ES+A G +V+KEKKRS+RSELEIVKTQEKFGTKHQRPCALCEQSFSEVNLVLAVPFKV
Sbjct:  201 RQQMSHESWIPDDLRMKMVRRGMAVIKENVFESVAHGSVVRKEKKRSSRSELEIVKTQEKFGTKHQRPCALCEQSFSEVNLVLAVPFKV 289
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BLAST of mRNA_H-paniculata_contig11276.816.1 vs. uniprot
Match: A0A836CGB7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGB7_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 5.660e-20
Identity = 48/85 (56.47%), Postives = 66/85 (77.65%), Query Frame = 1 
Query:   10 MSQESWIPMDLRMKMMRRSMAVIKENVDESMAQGQLVKKEKKRSNRSELEIVKTQEKFGTKHQRPCALCEQSFSEVNLVLAVPFK 264
            +SQESWIP+DLRMKM+RRS++ + ++V E+ A  ++  K+  ++ R+ LEI K QE+FG +  RPCALCEQ FS VNLVLAVP+K
Sbjct:  242 LSQESWIPIDLRMKMLRRSISAVADSVSETAAWEKVRTKQAAKNARTSLEIAKEQERFGRECPRPCALCEQVFSSVNLVLAVPYK 326
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BLAST of mRNA_H-paniculata_contig11276.816.1 vs. uniprot
Match: A0A7S2LA26_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LA26_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 1.530e-5
Identity = 32/84 (38.10%), Postives = 48/84 (57.14%), Query Frame = 1 
Query:   13 SQESWIPMDLRMKMMRRSMAVIKENVDESMAQGQLVKKEKKRSNRSELEIVKTQEKFGTKHQRPCALCEQSFSEVNLVLAVPFK 264
            S+ESWIP DLR +M++R  +V K N +          +E +R     LE  +++EK+G + +R C LC++     NLVLAV  K
Sbjct:  254 SRESWIPEDLRRRMLKREFSVAKMNYETREKCQSSNLRELQRCKSDALEKSRSKEKYGIEIKRNCGLCDRPHLSENLVLAVTLK 337
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11276.816.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FQQ7_ECTSI3.050e-3985.39Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CGB7_9STRA5.660e-2056.47Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2LA26_9STRA1.530e-538.10Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig11276contigH-paniculata_contig11276:393..1029 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-01_000150.1
Exons2
Model size276
Cds size267
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig11276.816.1prot_H-paniculata_contig11276.816.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig11276 393..1020 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928830.9137187-CDS-H-paniculata_contig11276:392..6171622928830.9137187-CDS-H-paniculata_contig11276:392..617Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11276 393..617 -
1691480637.7995017-CDS-H-paniculata_contig11276:392..6171691480637.7995017-CDS-H-paniculata_contig11276:392..617Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11276 393..617 -
1622928830.9254835-CDS-H-paniculata_contig11276:978..10201622928830.9254835-CDS-H-paniculata_contig11276:978..1020Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11276 979..1020 -
1691480637.8103309-CDS-H-paniculata_contig11276:978..10201691480637.8103309-CDS-H-paniculata_contig11276:978..1020Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11276 979..1020 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928830.9435756-UTR-H-paniculata_contig11276:1020..10291622928830.9435756-UTR-H-paniculata_contig11276:1020..1029Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11276 1021..1029 -
1691480637.8180835-UTR-H-paniculata_contig11276:1020..10291691480637.8180835-UTR-H-paniculata_contig11276:1020..1029Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11276 1021..1029 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig11276.816.1

>prot_H-paniculata_contig11276.816.1 ID=prot_H-paniculata_contig11276.816.1|Name=mRNA_H-paniculata_contig11276.816.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=89bp
MSQESWIPMDLRMKMMRRSMAVIKENVDESMAQGQLVKKEKKRSNRSELE
IVKTQEKFGTKHQRPCALCEQSFSEVNLVLAVPFKVSR*
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mRNA from alignment at H-paniculata_contig11276:393..1029-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig11276.816.1 ID=mRNA_H-paniculata_contig11276.816.1|Name=mRNA_H-paniculata_contig11276.816.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=637bp|location=Sequence derived from alignment at H-paniculata_contig11276:393..1029- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGCATCACATGAGTCAGGAAAGCTGGATACCGATGGATCTTCGGATGAA
GGTAGGACTTAGTGCTTGGATTAGACTATCGACACTGGTTTCGCTGTCCT
GACGCGATACCGTGGCTCTGTTTAGGTATACCTCAAAGTATTTCGAATCT
TTCTCTCTCCGCAGACATCTATATCATTCTCCAATCTGTATCCTTATCGG
ACAGAATGTGCTCGTGGATACTCCCAAGAGTTGGCAAACGCACATTCCAG
TCACACACATCCCAGTCAGGGACACGAGTGTGTTCGGTTGCAATTCATCA
TAGCGTAGAAGGATCTCAAAGACACCTTGACCACAGCGTAGGCCGTGTAA
ATATAGTGTCAAAGTGTCGCACTAAAATACGAGCCGTTTTTATCTCTATC
CTCACCTGACAGATGATGAGACGAAGCATGGCAGTGATCAAGGAGAACGT
AGATGAAAGCATGGCACAGGGCCAGTTGGTGAAAAAAGAAAAGAAACGCA
GTAATCGCAGCGAACTGGAGATCGTCAAGACCCAGGAAAAATTCGGGACT
AAGCACCAGCGCCCCTGCGCCCTCTGCGAGCAAAGCTTCAGCGAGGTTAA
CCTGGTGCTCGCAGTTCCCTTTAAAGTAAGCCGCTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig11276:393..1029-

>mRNA_H-paniculata_contig11276.816.1 ID=mRNA_H-paniculata_contig11276.816.1|Name=mRNA_H-paniculata_contig11276.816.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=534bp|location=Sequence derived from alignment at H-paniculata_contig11276:393..1029- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGTCAGGAAAGCTGGATACCGATGGATCTTCGGATGAAGATGAGTCA
GGAAAGCTGGATACCGATGGATCTTCGGATGAAGATGATGAGACGAAGCA
TGGCAGTGATCAAGGAGAACGTAGATGAAAGCATGGCACAGGGCCAGTTG
GTGAAAAAAGAAAAGAAACGCAGTAATCGCAGCGAACTGGAGATCGTCAA
GACCCAGGAAAAATTCGGGACTAAGCACCAGCGCCCCTGCGCCCTCTGCG
AGCAAAGCTTCAGCGAGGTTAACCTGGTGCTCGCAGTTCCCTTTAAAGTA
AGCCGCTAGATGATGAGACGAAGCATGGCAGTGATCAAGGAGAACGTAGA
TGAAAGCATGGCACAGGGCCAGTTGGTGAAAAAAGAAAAGAAACGCAGTA
ATCGCAGCGAACTGGAGATCGTCAAGACCCAGGAAAAATTCGGGACTAAG
CACCAGCGCCCCTGCGCCCTCTGCGAGCAAAGCTTCAGCGAGGTTAACCT
GGTGCTCGCAGTTCCCTTTAAAGTAAGCCGCTAG
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