mRNA_H-paniculata_contig30060.8160.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig30060.8160.1
Unique NamemRNA_H-paniculata_contig30060.8160.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig30060.8160.1 vs. uniprot
Match: D7FQ61_ECTSI (Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And Its Functional Consequences pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And Its Functional Consequences n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ61_ECTSI)

HSP 1 Score: 114 bits (285), Expect = 1.440e-27
Identity = 60/94 (63.83%), Postives = 67/94 (71.28%), Query Frame = 1
Query:   19 ESCLHVACFEGNVAAARYLLSLDADPNSANIASGLNTPLHEAIRGGSLAIICLLLKSSANVLAANAHGDLPLHVACRAGRLDIARRLLAYDADW 300
            E+CLHVA FEGNV A RYLLS+DADPNSA+ ASG NTPLHEA RGGSLA+  LLLKSSANVLA N+HGD                  LA+D+DW
Sbjct:  240 ETCLHVASFEGNVPAVRYLLSVDADPNSAHSASGYNTPLHEAARGGSLAVTRLLLKSSANVLAVNSHGDHXXXXXXXXXXXXXXXXXLAHDSDW 333          
BLAST of mRNA_H-paniculata_contig30060.8160.1 vs. uniprot
Match: A0A6H5KVI9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVI9_9PHAE)

HSP 1 Score: 109 bits (272), Expect = 4.150e-26
Identity = 57/94 (60.64%), Postives = 64/94 (68.09%), Query Frame = 1
Query:   19 ESCLHVACFEGNVAAARYLLSLDADPNSANIASGLNTPLHEAIRGGSLAIICLLLKSSANVLAANAHGDLPLHVACRAGRLDIARRLLAYDADW 300
            E+CLHVA FEGNV A RYLLS+DADPNSA+ ASG NTPLHEA RGGSLA+  LLLKSSANVL  N+HGD                    +D+DW
Sbjct:  110 ETCLHVASFEGNVPAVRYLLSIDADPNSAHSASGYNTPLHEAARGGSLAVTRLLLKSSANVLTVNSHGDHXXXXXXXXXXXXXXXXXXXHDSDW 203          
BLAST of mRNA_H-paniculata_contig30060.8160.1 vs. uniprot
Match: UPI001EB0A0C5 (ankyrin repeat and protein kinase domain-containing protein 1-like isoform X1 n=2 Tax=Haliotis rufescens TaxID=6454 RepID=UPI001EB0A0C5)

HSP 1 Score: 63.9 bits (154), Expect = 6.720e-10
Identity = 35/101 (34.65%), Postives = 54/101 (53.47%), Query Frame = 1
Query:   10 CGRESCLHVACFE-----GNVAAARYLLSLDADPNSANIASGLNTPLHEAIRGGSLAIICLLLKSSANVLAANAHGDLPLHVACRAGRLDIARRLLAYDAD 297
            C  + C+  A F      G V   +  +     P   N+    ++PLH A+ G S  ++ LLL  +  ++A N +G  PLH+ACR+GRLD+AR+LL   A+
Sbjct:    7 CEEDCCIDKATFYAYVAGGQVEQVKACIEAGLPPVITNLTEDTDSPLHIAVLGDSTEMVDLLLSHTNFIMATNMYGKTPLHLACRSGRLDVARKLLQRGAE 107          
BLAST of mRNA_H-paniculata_contig30060.8160.1 vs. uniprot
Match: A0A024TEG5_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TEG5_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 2.380e-7
Identity = 31/93 (33.33%), Postives = 50/93 (53.76%), Query Frame = 1
Query:   28 LHVACFEGNVAAARYLLSLDADPNSANIASGLNTPLHEAIRGGSLAIICLLLKSSANVLAANAHGDLPLHVACRAGRLDIAR--RLLAYDADW 300
            L  A F G VA  +Y +     P++A       TPLH A  GGS A++  LL    +++A +A+G+ P+H+A R GR ++ +  ++   D  W
Sbjct:  132 LWTAAFHGRVAEVQYYVRHGLHPDTAEFGYPNQTPLHYAAAGGSAAMVTYLLAMHCSLVAVDANGNTPVHLAARWGRREVIKVMKMETNDGSW 224          
BLAST of mRNA_H-paniculata_contig30060.8160.1 vs. uniprot
Match: UPI001C9A3891 (ankyrin repeat domain-containing protein 16-like n=1 Tax=Colletes gigas TaxID=935657 RepID=UPI001C9A3891)

HSP 1 Score: 55.1 bits (131), Expect = 1.110e-6
Identity = 33/88 (37.50%), Postives = 50/88 (56.82%), Query Frame = 1
Query:   19 ESCLHVACFEGNVAAARYLLSLDADPNSANIASGLNTPLHEAIRGGSLAIICLLLKSSANVLAANAHGDLPLHVACRAGRLDIARRLL 282
             S +H+A F G+      L ++D +  +A  +SG +TPLHEAI+GG LA+   +++  A+V A +  G   LHVA   G  D  R +L
Sbjct:  188 RSVMHIAAFHGHEGIIEELATIDPNLANARDSSG-HTPLHEAIKGGHLAVAERIIELRADVRATDNVGQTILHVAALTGNTDAVRYIL 274          
BLAST of mRNA_H-paniculata_contig30060.8160.1 vs. uniprot
Match: A0A7S1DFQ7_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1DFQ7_HEMAN)

HSP 1 Score: 52.0 bits (123), Expect = 2.750e-6
Identity = 25/55 (45.45%), Postives = 36/55 (65.45%), Query Frame = 1
Query:  118 GLNTPLHEAIRGGSLAIICLLLKSSANVLAANAHGDLPLHVACRAGRLDIARRLL 282
            G NT LH A   G +  +  LL++ A+  AANA GD+PLH+ACR G L++ + L+
Sbjct:    6 GGNTALHAAALEGDIGAVSSLLEAGADPAAANAEGDMPLHIACRNGDLEMVKMLV 60          
BLAST of mRNA_H-paniculata_contig30060.8160.1 vs. uniprot
Match: A0A7I8VRY7_9ANNE (Hypothetical protein n=1 Tax=Dimorphilus gyrociliatus TaxID=2664684 RepID=A0A7I8VRY7_9ANNE)

HSP 1 Score: 53.1 bits (126), Expect = 5.430e-6
Identity = 31/90 (34.44%), Postives = 50/90 (55.56%), Query Frame = 1
Query:   19 ESCLHVACFEGNVAAARYLLSLDADPNSANIASGLNTPLHEAIRGGSLAIICLLLKSSANVLAANAHGDLPLHVACRAGRLDIARRLLAY 288
             S LH AC  G+    +YLL   A       + GLN PL +A++GGS+ II LL+ + AN+   +  G   +H+A +A + D+ + L+ +
Sbjct:  171 RSILHTACIHGHCEMVKYLLRKTAISVHLKDSCGLN-PLMDAVKGGSVDIIDLLVTNGANINDTDNLGKSCIHIAAQANQADVIKHLIKH 259          
BLAST of mRNA_H-paniculata_contig30060.8160.1 vs. uniprot
Match: A0A7M7TE43_NASVI (Uncharacterized protein n=3 Tax=Nasonia vitripennis TaxID=7425 RepID=A0A7M7TE43_NASVI)

HSP 1 Score: 50.4 bits (119), Expect = 5.450e-5
Identity = 27/74 (36.49%), Postives = 44/74 (59.46%), Query Frame = 1
Query:   28 LHVACFEGNVAAARYLLSLDADPNSANIASGLNTPLHEAIRGGSLAIICLLLKSSANVLAANAHGDLPLHVACR 249
            L+ A  +G   AA  L+      N+ + A   +TPLH AI+ GS+ I+ LLL+  A++ A N+ G+ PLH++ +
Sbjct:   43 LNYALAKGQKEAAMMLIERGCRVNNRDFALPADTPLHHAIKFGSIEIVELLLRKGASIEARNSEGETPLHLSAK 116          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig30060.8160.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D7FQ61_ECTSI1.440e-2763.83Chain A, Crystal Structure Of The Bard1 Ankyrin Re... [more]
A0A6H5KVI9_9PHAE4.150e-2660.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI001EB0A0C56.720e-1034.65ankyrin repeat and protein kinase domain-containin... [more]
A0A024TEG5_9STRA2.380e-733.33Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
UPI001C9A38911.110e-637.50ankyrin repeat domain-containing protein 16-like n... [more]
A0A7S1DFQ7_HEMAN2.750e-645.45Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A7I8VRY7_9ANNE5.430e-634.44Hypothetical protein n=1 Tax=Dimorphilus gyrocilia... [more]
A0A7M7TE43_NASVI5.450e-536.49Uncharacterized protein n=3 Tax=Nasonia vitripenni... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig30060contigH-paniculata_contig30060:744..1043 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score117.1
Seed ortholog evalue4.8e-24
Seed eggNOG ortholog2880.D7FQ61
Hectar predicted targeting categoryother localisation
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG0504@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size300
Cds size300
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929923.459583-CDS-H-paniculata_contig30060:743..10431622929923.459583-CDS-H-paniculata_contig30060:743..1043Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig30060 744..1043 +
1691481071.3412223-CDS-H-paniculata_contig30060:743..10431691481071.3412223-CDS-H-paniculata_contig30060:743..1043Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig30060 744..1043 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig30060.8160.1prot_H-paniculata_contig30060.8160.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig30060 744..1043 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig30060.8160.1

>prot_H-paniculata_contig30060.8160.1 ID=prot_H-paniculata_contig30060.8160.1|Name=mRNA_H-paniculata_contig30060.8160.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=100bp
LPLCGRESCLHVACFEGNVAAARYLLSLDADPNSANIASGLNTPLHEAIR
GGSLAIICLLLKSSANVLAANAHGDLPLHVACRAGRLDIARRLLAYDADW
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mRNA from alignment at H-paniculata_contig30060:744..1043+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig30060.8160.1 ID=mRNA_H-paniculata_contig30060.8160.1|Name=mRNA_H-paniculata_contig30060.8160.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=300bp|location=Sequence derived from alignment at H-paniculata_contig30060:744..1043+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTACCTCTTTGTGGCAGAGAAAGCTGCCTACACGTGGCGTGCTTCGAGGG CAACGTGGCCGCCGCAAGGTACCTCCTTTCCCTCGACGCGGATCCCAACA GTGCCAACATTGCGAGCGGCTTGAACACCCCTCTGCACGAGGCCATCAGG GGGGGCTCCCTGGCCATAATCTGCCTCCTCCTCAAGTCTTCAGCCAACGT CCTCGCGGCGAACGCTCACGGCGACCTGCCACTGCACGTTGCTTGTCGCG CGGGGCGGCTGGATATCGCTCGCCGGCTGCTAGCTTACGATGCCGACTGG
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Coding sequence (CDS) from alignment at H-paniculata_contig30060:744..1043+

>mRNA_H-paniculata_contig30060.8160.1 ID=mRNA_H-paniculata_contig30060.8160.1|Name=mRNA_H-paniculata_contig30060.8160.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=600bp|location=Sequence derived from alignment at H-paniculata_contig30060:744..1043+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTACCTCTTTGTGGCAGAGAAAGCTGCCTACACGTGGCGTGCTTCGAGGG
CAACGTGGCCGCCGCAAGGTACCTCCTTTCCCTCGACGCGGATCCCAACA
GTGCCAACATTGCGAGCGGCTTGAACACCCCTCTGCACGAGGCCATCAGG
GGGGGCTCCCTGGCCATAATCTGCCTCCTCCTCAAGTCTTCAGCCAACGT
CCTCGCGGCGAACGCTCACGGCGACCTGCCACTGCACGTTGCTTGTCGCG
CGGGGCGGCTGGATATCGCTCGCCGGCTGCTAGCTTACGATGCCGACTGG
TTACCTCTTTGTGGCAGAGAAAGCTGCCTACACGTGGCGTGCTTCGAGGG
CAACGTGGCCGCCGCAAGGTACCTCCTTTCCCTCGACGCGGATCCCAACA
GTGCCAACATTGCGAGCGGCTTGAACACCCCTCTGCACGAGGCCATCAGG
GGGGGCTCCCTGGCCATAATCTGCCTCCTCCTCAAGTCTTCAGCCAACGT
CCTCGCGGCGAACGCTCACGGCGACCTGCCACTGCACGTTGCTTGTCGCG
CGGGGCGGCTGGATATCGCTCGCCGGCTGCTAGCTTACGATGCCGACTGG
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