mRNA_H-paniculata_contig11272.814.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
Overview
Homology
BLAST of mRNA_H-paniculata_contig11272.814.1 vs. uniprot
Match: W7TJ26_9STRA (Gag-pol polyprotein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TJ26_9STRA) HSP 1 Score: 168 bits (426), Expect = 1.930e-44 Identity = 100/258 (38.76%), Postives = 147/258 (56.98%), Query Frame = 1 Query: 1 ATEEEWEVLVDNGTWESEDPGRLPAGRKVSRTKWIFKRKLKEEGSVARYKARLVAQGFSQ-VE*RFI*NQCPRSSHVDVTYFFSLAAEHDFELAGMDVDAAYLNAPVEEKLFVKLPP---KFSPFSRDIPFVRRLRKSLYDLKQSGRNWNNFIEDFLVGIGLDHSTTDSCLYFSRDDGGETNLLMAVYIDDLVIAGR-REKVDEFKHNIRQCFRMKDLGSLSRVLGIEVRRDRPNGTITISQGSYVREVLKRYGFDQC 759 A + E++ + NGTWE LP G + + W+ K ++G + R KAR +A+G+SQ ++ P +S + +LA D EL MDVD AYL + +EEK+++K PP K+ P ++ V RLRKSLY LKQSGRNW+ I+ + G GL S D CLY GE L++ +Y+DDL+I R D+FK +I + F MKDL L +LG+ ++R+R N T+ ISQ Y+ +L ++G C Sbjct: 212 AKDAEYQAHMKNGTWELTP---LPKGERCISSGWVETDKRDQKGVIVRRKARFIAKGYSQEFGYDYLHTYAPVASMTTIRLVLALACILDLELDNMDVDTAYLQSDLEEKVYIKQPPGYEKYGPNGGEL--VCRLRKSLYGLKQSGRNWHKKIDGWFRGYGLHPSYADPCLYVKFASSGEI-LVIVLYVDDLIIGSNSRTMTDKFKQDISREFSMKDLKELDWILGMGIKRNRENRTMEISQTGYIGMMLNKFGMADC 463
BLAST of mRNA_H-paniculata_contig11272.814.1 vs. uniprot
Match: A0A284QR88_ARMOS (Uncharacterized protein n=2 Tax=Armillaria TaxID=47424 RepID=A0A284QR88_ARMOS) HSP 1 Score: 169 bits (428), Expect = 3.180e-44 Identity = 101/251 (40.24%), Postives = 145/251 (57.77%), Query Frame = 1 Query: 1 ATEEEWEVLVDNGTWESEDPGRLPAGRKVSRTKWIFKRKLKEEGSVARYKARLVAQGFSQVE*-RFI*NQCPRSSHVDVTYFFSLAAEHDFELAGMDVDAAYLNAPVEEKLFVKLPPKFSPFSRDIPFVRRLRKSLYDLKQSGRNWNNFIEDFLVGIGLDHSTTDSCLYFSRDDGGETNLLMAVYIDDLVIAGRR-EKVDEFKHNIRQCFRMKDLGSLSRVLGIEVRRDRPNGTITISQGSYVREVLKRYG 747 A +EE V+ + GT+ ED LPAGR KW+F +K E+G+++RYKARLVAQG+SQ+ + P V +AA D E++ MDV AYLN +EE+++++ P + S V RLRK+LY LKQSGR WN + L IG D C+Y +G T ++ V++DDL+I E + E K + F +KDLG +++GIE++RDR NGTI++SQ Y+ VL R+G Sbjct: 897 AMDEEMSVIKEMGTYTKED---LPAGRDTIGCKWVFLKKYDEDGNISRYKARLVAQGYSQIPGVDYTETFAPVVRLESVRAALGIAAIKDLEISQMDVKGAYLNGELEEEIYMRQPEGYDDGSGR---VCRLRKTLYGLKQSGREWNREFDRKLTSIGFSKLEADHCVYKRIREGRMT--IITVWVDDLLIFSETIEDMMETKGELHNLFDVKDLGEPKKIIGIEIKRDRENGTISLSQKQYIEGVLTRFG 1139
BLAST of mRNA_H-paniculata_contig11272.814.1 vs. uniprot
Match: A0A067T5Q4_GALM3 (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Galerina marginata (strain CBS 339.88) TaxID=685588 RepID=A0A067T5Q4_GALM3) HSP 1 Score: 168 bits (425), Expect = 7.890e-44 Identity = 97/255 (38.04%), Postives = 146/255 (57.25%), Query Frame = 1 Query: 1 ATEEEWEVLVDNGTWESEDPGRLPAGRKVSRTKWIFKRKLKEEGSVARYKARLVAQGFSQVE*R-FI*NQCPRSSHVDVTYFFSLAAEHDFELAGMDVDAAYLNAPVEEKLFVKLPPKFSPFSRDIPFVRRLRKSLYDLKQSGRNWNNFIEDFLVGIGLDHSTTDSCLYFSRDDGGETNLLMAVYIDDLVI-AGRREKVDEFKHNIRQCFRMKDLGSLSRVLGIEVRRDRPNGTITISQGSYVREVLKRYGFDQC 759 A EE+ +L TWE +D LP RK +W+F RK E G + RYKARLVAQGFSQ+ F P H + ++AA + E+ +DV AYLN + E++F++ P F + V RL+K+LY LKQSGR WN ++ L + S D C+Y R + G T+ + V++DDL+I + ++++E K +++ F + DLG ++G+EV+RDR TI++ Q SYV +LK+YG + C Sbjct: 746 AINEEYSLLEGMETWELDD---LPPERKAIGCRWVFLRKYNENGEIIRYKARLVAQGFSQIPGMDFDGTFAPVMRHDSLRALLAIAAIKNLEIQQLDVKGAYLNGDLREEIFMRQPDGFHDGTSK---VCRLKKTLYGLKQSGREWNRKLDKVLTELRFSKSNVDHCVYI-RTENGHTSYI-TVWVDDLMIFTDKSDEMNEIKAYLKKEFEISDLGEPKLIIGLEVKRDRKKHTISLGQTSYVDRILKKYGMENC 992
BLAST of mRNA_H-paniculata_contig11272.814.1 vs. uniprot
Match: A0A2G8RWY5_9APHY (Transcription factor n=1 Tax=Ganoderma sinense ZZ0214-1 TaxID=1077348 RepID=A0A2G8RWY5_9APHY) HSP 1 Score: 167 bits (424), Expect = 1.110e-43 Identity = 96/232 (41.38%), Postives = 138/232 (59.48%), Query Frame = 1 Query: 70 PAGRKVSRTKWIFKRKLKEEGSVARYKARLVAQGFSQVE*RFI*NQ---CPRSSHVDVTYFFSLAAEHDFELAGMDVDAAYLNAPVEEKLFVKLPPKFSPFSRDIPFVRRLRKSLYDLKQSGRNWNNFIEDFLVGIGLDHSTTDSCLYFSRDDGGETNLLMAVYIDDLVIAGRREKVDEFKHNIRQCFRMKDLGSLSRVLGIEVRRDRPNGTITISQGSYVREVLKRYGFDQ 756 P + +K +F+ K EG+V+ +KARLVAQGFSQV R + P S + SLAA HD+EL MDV +AYLN +EE ++++LPP F+P + V RL+K+LY LKQ+GR W + + +G D +++ R+ GE+ +++A +DDL I G + VD F +I+Q F M DLG L +LGIEVRRDR TI ISQ SY+ ++ R+ D+ Sbjct: 1066 PPDANIVGSKLVFRVKHDAEGAVSGFKARLVAQGFSQVPGRDYHDDETFAPVSRLPSIRTILSLAARHDWELRQMDVKSAYLNGILEETVYMRLPPGFAPPEQS-HLVCRLKKTLYGLKQAGRGWYKTLTAAMENMGFTRCVADHAVFYKRE--GESAIIVAASVDDLTITGTSDLVDAFAVDIKQRFEMSDLGDLHWILGIEVRRDRQARTIAISQRSYIDTIVSRFNLDE 1294
BLAST of mRNA_H-paniculata_contig11272.814.1 vs. uniprot
Match: W7TCB8_9STRA (Gag-pol polyprotein n=3 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TCB8_9STRA) HSP 1 Score: 162 bits (409), Expect = 1.950e-43 Identity = 96/247 (38.87%), Postives = 138/247 (55.87%), Query Frame = 1 Query: 28 VDNGTWESEDPGRLPAGRKVSRTKWIFKRKLKEEGSVARYKARLVAQGFSQ-VE*RFI*NQCPRSSHVDVTYFFSLAAEHDFELAGMDVDAAYLNAPVEEKLFVKLPPKFSPF-SRDIPFVRRLRKSLYDLKQSGRNWNNFIEDFLVGIGLDHSTTDSCLYFSRDDGGETNLLMAVYIDDLVIAGR-REKVDEFKHNIRQCFRMKDLGSLSRVLGIEVRRDRPNGTITISQGSYVREVLKRYGFDQC 759 + NGTWE LP G + + W+ K + G + R KAR +A+G+SQ ++ P +S + +LA D EL MDV+ AYL + +EEK++VK PP + + S V RLRKSLY LKQSGRNW+ I+ + G G S+ D CLY GE L++ +Y+DDL+I RE V +FKH I + F MKDL L +LG+ ++RDR + ISQ +Y+ +L ++ C Sbjct: 1 MKNGTWELTP---LPKGERCISSGWVETDKRDQNGVIVRRKARFIAKGYSQEFGYDYLHTYAPVASITTIRLVLALACILDLELDNMDVEPAYLQSDLEEKVYVKQPPGYEQYGSNGEELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHPSSADPCLYVKFGSSGEI-LVIVLYVDDLIITSNSREMVGKFKHAISREFSMKDLKELDWILGMAIKRDRGKRVMEISQTAYIDMMLAKFRMADC 243
BLAST of mRNA_H-paniculata_contig11272.814.1 vs. uniprot
Match: W7T0T3_9STRA (Gag-pol polyprotein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T0T3_9STRA) HSP 1 Score: 166 bits (419), Expect = 4.420e-43 Identity = 97/256 (37.89%), Postives = 144/256 (56.25%), Query Frame = 1 Query: 1 ATEEEWEVLVDNGTWESEDPGRLPAGRKVSRTKWIFKRKLKEEGSVARYKARLVAQGFSQ-VE*RFI*NQCPRSSHVDVTYFFSLAAEHDFELAGMDVDAAYLNAPVEEKLFVKLPPKFSPF-SRDIPFVRRLRKSLYDLKQSGRNWNNFIEDFLVGIGLDHSTTDSCLYFSRDDGGETNLLMAVYIDDLVIAGR-REKVDEFKHNIRQCFRMKDLGSLSRVLGIEVRRDRPNGTITISQGSYVREVLKRYGFDQC 759 A + E++ + NGTWE LP G + + W+ K + G + R KAR +A+G+SQ ++ P +S + ++A D EL MDV+ AYL + +EEK++VK P + + S V RLRKSLY LKQSGRNW+ I+ + G G S+ D CLY GE L++ +Y+DDL+I RE V++FKH I + F MKDL L +LG+ ++RDR + ISQ +Y+ +L ++G C Sbjct: 432 ARDAEYQAHMKNGTWELTP---LPKGERCISSGWVDSDKRDQNGVIVRRKARFIAKGYSQEFGYDYLYTYAPVASITTIRLILAIACILDLELDNMDVETAYLQSDLEEKVYVKQPIGYEQYGSNGEELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHPSSADPCLYVKFGSSGEI-LVIVLYVDDLIITSNSREMVNKFKHAISREFSMKDLKELDWILGMAIKRDREKRVMEISQTAYIDMMLAKFGMADC 683
BLAST of mRNA_H-paniculata_contig11272.814.1 vs. uniprot
Match: W7TII5_9STRA (Gag-pol polyprotein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TII5_9STRA) HSP 1 Score: 157 bits (397), Expect = 4.730e-43 Identity = 94/247 (38.06%), Postives = 139/247 (56.28%), Query Frame = 1 Query: 34 NGTWESEDPGRLPAGRKVSRTKWIFKRKLKEEGSVARYKARLVAQGFSQ-VE*RFI*NQCPRSSHVDVTYFFSLAAEHDFELAGMDVDAAYLNAPVEEKLFVKLPPKFS---PFSRDIPFVRRLRKSLYDLKQSGRNWNNFIEDFLVGIGLDHSTTDSCLYFSRDDGGETNLLMAVYIDDLVIAGR-REKVDEFKHNIRQCFRMKDLGSLSRVLGIEVRRDRPNGTITISQGSYVREVLKRYGFDQC 759 NGTW+ LP G + + W+ K + G + R KAR +A+G+SQ ++ P +S + ++A D EL MDVD AYL + +EEK++VK PP + P ++ V RLRKSLY LKQSGRNW+ I+ + G G S+ D CLY GE L++ +Y+DDL+IAG R+ VD+FK I + MKDL L +LG+ ++R+R + ISQ +Y+ +L ++ C Sbjct: 3 NGTWKLTP---LPKGERCISSGWVETDKRDQNGIIVRRKARFIAKGYSQEYGYDYLNTYAPVASITTIRLILAIACILDLELDNMDVDTAYLQSDLEEKIYVKQPPGYEQCGPNGEEL--VCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHSSSADPCLYVKFGSSGEM-LVIVLYVDDLIIAGNSRDMVDDFKQAISKEISMKDLKELDWILGMAIKRNREKRFMEISQTAYIDMMLAKFKMADC 243
BLAST of mRNA_H-paniculata_contig11272.814.1 vs. uniprot
Match: A0A7D9HG25_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9HG25_PARCT) HSP 1 Score: 160 bits (405), Expect = 9.750e-43 Identity = 92/257 (35.80%), Postives = 152/257 (59.14%), Query Frame = 1 Query: 13 EWEVLVDNGTWESEDPGRLPAGRKVSRTKWIFKRKLKEEGS-VARYKARLVAQGFSQV-----E*RFI*NQCPRSSHVDVTYFFSLAAEHDFELAGMDVDAAYLNAPVEEKLFVKLPPKFSPFSRD-IPFVRRLRKSLYDLKQSGRNWNNFIEDFLVGIGLDHSTTDSCLYFSRDDGGETNLLMAVYIDDLVIAGRR-EKVDEFKHNIRQCFRMKDLGSLSRVLGIEVRRDRPNGTITISQGSYVREVLKRYGFDQC 759 E E L +N T+E LP G+ + +W++ +KE+ + + KAR VA+G+SQV E F P ++ +T LAA++D + MDV A+L+AP++ ++F++ P F S + + V RL+KSLY LKQSGRNWN ++++L+ G + D C+Y + GE +++ +++DDL+IA +K+ +FK N++ FRMKDLG +S LGI ++ NG I ++Q Y++++L R+G C Sbjct: 167 EMEALKENDTFELTT---LPEGKNLVGGRWVYT--IKEDANGLETLKARYVAKGYSQVHGIDYEETF----SPTANITSITILMQLAAQYDLTVHQMDVKTAFLHAPIDHEIFMEQPMGFEELSENGVKLVYRLKKSLYGLKQSGRNWNRVLDEYLISDGFVRNPVDHCVY--QKQTGEDIIIVVIWVDDLIIASSNTDKIRQFKENMKSKFRMKDLGEISYFLGISFKQG--NGVIKMNQKRYIQKILDRFGMSDC 410
BLAST of mRNA_H-paniculata_contig11272.814.1 vs. uniprot
Match: A0A165UZ38_9AGAM (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Neolentinus lepideus HHB14362 ss-1 TaxID=1314782 RepID=A0A165UZ38_9AGAM) HSP 1 Score: 157 bits (396), Expect = 1.110e-42 Identity = 92/258 (35.66%), Postives = 152/258 (58.91%), Query Frame = 1 Query: 1 ATEEEWEVLVDNGTWESEDPGRLPAGRKVSRTKWIFKRKLKEEGSVARYKARLVAQGFSQVE*RFI*NQ--CPRSSHVDVTYFFSLAAEHDFELAGMDVDAAYLNAPVEEKLFVKLPPKFSPFSRDIPFVRRLRKSLYDLKQSGRNWNNFIEDFLVG-IGLDHSTTDSCLY-FSRDDGGETNLLMAVYIDDLVIAGRREK-VDEFKHNIRQCFRMKDLGSLSRVLGIEVRRDRPNGTITISQGSYVREVLKRYGFDQC 759 A ++E + LV+NGT+E + P GRK ++W+FK K +GS+ RYK RLVA+GFSQ F N+ P + +LAA D EL +D+ AYLN +EE ++++ P F + +V RL+K LY LKQ+GR+W+ + + L +G T + ++ + +DD +++ V++DD+ IA + + + K ++RQ F+++DLG S +LG+E++RDR + T+TISQ Y+ ++L R+ C Sbjct: 60 AAQDEIQSLVENGTFELVE---CPPGRKAIGSRWVFKVKRNADGSIERYKGRLVAKGFSQRP-GFDYNETFAPTPKWASLRAILALAALEDLELESVDISTAYLNGTLEEDVYMRQPKGFE--QKGPEWVWRLQKLLYGLKQAGRHWHEKLNEVLTEKLGFSRLTCEHSVWVYGKDD---VCIIIPVFVDDMTIASKSSAAIQKVKDDLRQHFKLRDLGPTSWLLGVEIKRDRSSRTLTISQRQYILDILSRFSMADC 308
BLAST of mRNA_H-paniculata_contig11272.814.1 vs. uniprot
Match: A0A6D2JI50_9BRAS (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2JI50_9BRAS) HSP 1 Score: 155 bits (392), Expect = 1.580e-42 Identity = 99/253 (39.13%), Postives = 143/253 (56.52%), Query Frame = 1 Query: 1 ATEEEWEVLVDNGTWESEDPGRLPAGRKVSRTKWIFKRKLKEEG-SVARYKARLVAQGFSQVE*RFI*NQC--PRSSHVDVTYFFSLAAEHDFELAGMDVDAAYLNAPVEEKLFVKLPPKFSPFSRDIPFVRRLRKSLYDLKQSGRNWNNFIEDFLVGIGLDHSTTDSCLYFSRDDGGETNLLMAVYIDDLVIA-GRREKVDEFKHNIRQCFRMKDLGSLSRVLGIEVRRDRPNGTITISQGSYVREVLKRYG 747 A++EEW L+ N TW+ D P G +V +KW++ K G + R+K RLVAQGFSQ E N+ P HV + S D+EL MDV A+L+ +EE++ +K P F D V LRKSLY LKQS R WN + F+ G + DSC+Y R+ E + + +Y+DD++IA G + +V K + Q F MKDLG SR+LG+++ RDR G +++SQ +Y+ +VLK +G Sbjct: 22 ASKEEWSSLMKNHTWDLIDK---PDGARVVGSKWLYTIKSGIPGVELKRFKCRLVAQGFSQTE-GVDYNEIFSPVVKHVSIRIMLSAVVNRDYELEQMDVKTAFLHGDLEERILMKQPEGFIK-KGDENKVCLLRKSLYGLKQSPRQWNLKFDSFMKESGFIRRSYDSCVYM-RNLNKENAVYLLLYVDDMLIASGCKAEVRLVKDTLSQKFEMKDLGPASRILGMDIIRDRKKGILSLSQETYIEKVLKAFG 268 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11272.814.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig11272.814.1 >prot_H-paniculata_contig11272.814.1 ID=prot_H-paniculata_contig11272.814.1|Name=mRNA_H-paniculata_contig11272.814.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=159bp MDVDAAYLNAPVEEKLFVKLPPKFSPFSRDIPFVRRLRKSLYDLKQSGRNback to top mRNA from alignment at H-paniculata_contig11272:3..761+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig11272.814.1 ID=mRNA_H-paniculata_contig11272.814.1|Name=mRNA_H-paniculata_contig11272.814.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=759bp|location=Sequence derived from alignment at H-paniculata_contig11272:3..761+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig11272:3..761+ >mRNA_H-paniculata_contig11272.814.1 ID=mRNA_H-paniculata_contig11272.814.1|Name=mRNA_H-paniculata_contig11272.814.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=954bp|location=Sequence derived from alignment at H-paniculata_contig11272:3..761+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |