mRNA_H-paniculata_contig11272.814.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig11272.814.1
Unique NamemRNA_H-paniculata_contig11272.814.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig11272.814.1 vs. uniprot
Match: W7TJ26_9STRA (Gag-pol polyprotein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TJ26_9STRA)

HSP 1 Score: 168 bits (426), Expect = 1.930e-44
Identity = 100/258 (38.76%), Postives = 147/258 (56.98%), Query Frame = 1
Query:    1 ATEEEWEVLVDNGTWESEDPGRLPAGRKVSRTKWIFKRKLKEEGSVARYKARLVAQGFSQ-VE*RFI*NQCPRSSHVDVTYFFSLAAEHDFELAGMDVDAAYLNAPVEEKLFVKLPP---KFSPFSRDIPFVRRLRKSLYDLKQSGRNWNNFIEDFLVGIGLDHSTTDSCLYFSRDDGGETNLLMAVYIDDLVIAGR-REKVDEFKHNIRQCFRMKDLGSLSRVLGIEVRRDRPNGTITISQGSYVREVLKRYGFDQC 759
            A + E++  + NGTWE      LP G +   + W+   K  ++G + R KAR +A+G+SQ     ++    P +S   +    +LA   D EL  MDVD AYL + +EEK+++K PP   K+ P   ++  V RLRKSLY LKQSGRNW+  I+ +  G GL  S  D CLY      GE  L++ +Y+DDL+I    R   D+FK +I + F MKDL  L  +LG+ ++R+R N T+ ISQ  Y+  +L ++G   C
Sbjct:  212 AKDAEYQAHMKNGTWELTP---LPKGERCISSGWVETDKRDQKGVIVRRKARFIAKGYSQEFGYDYLHTYAPVASMTTIRLVLALACILDLELDNMDVDTAYLQSDLEEKVYIKQPPGYEKYGPNGGEL--VCRLRKSLYGLKQSGRNWHKKIDGWFRGYGLHPSYADPCLYVKFASSGEI-LVIVLYVDDLIIGSNSRTMTDKFKQDISREFSMKDLKELDWILGMGIKRNRENRTMEISQTGYIGMMLNKFGMADC 463          
BLAST of mRNA_H-paniculata_contig11272.814.1 vs. uniprot
Match: A0A284QR88_ARMOS (Uncharacterized protein n=2 Tax=Armillaria TaxID=47424 RepID=A0A284QR88_ARMOS)

HSP 1 Score: 169 bits (428), Expect = 3.180e-44
Identity = 101/251 (40.24%), Postives = 145/251 (57.77%), Query Frame = 1
Query:    1 ATEEEWEVLVDNGTWESEDPGRLPAGRKVSRTKWIFKRKLKEEGSVARYKARLVAQGFSQVE*-RFI*NQCPRSSHVDVTYFFSLAAEHDFELAGMDVDAAYLNAPVEEKLFVKLPPKFSPFSRDIPFVRRLRKSLYDLKQSGRNWNNFIEDFLVGIGLDHSTTDSCLYFSRDDGGETNLLMAVYIDDLVIAGRR-EKVDEFKHNIRQCFRMKDLGSLSRVLGIEVRRDRPNGTITISQGSYVREVLKRYG 747
            A +EE  V+ + GT+  ED   LPAGR     KW+F +K  E+G+++RYKARLVAQG+SQ+    +     P      V     +AA  D E++ MDV  AYLN  +EE+++++ P  +   S     V RLRK+LY LKQSGR WN   +  L  IG      D C+Y    +G  T  ++ V++DDL+I     E + E K  +   F +KDLG   +++GIE++RDR NGTI++SQ  Y+  VL R+G
Sbjct:  897 AMDEEMSVIKEMGTYTKED---LPAGRDTIGCKWVFLKKYDEDGNISRYKARLVAQGYSQIPGVDYTETFAPVVRLESVRAALGIAAIKDLEISQMDVKGAYLNGELEEEIYMRQPEGYDDGSGR---VCRLRKTLYGLKQSGREWNREFDRKLTSIGFSKLEADHCVYKRIREGRMT--IITVWVDDLLIFSETIEDMMETKGELHNLFDVKDLGEPKKIIGIEIKRDRENGTISLSQKQYIEGVLTRFG 1139          
BLAST of mRNA_H-paniculata_contig11272.814.1 vs. uniprot
Match: A0A067T5Q4_GALM3 (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Galerina marginata (strain CBS 339.88) TaxID=685588 RepID=A0A067T5Q4_GALM3)

HSP 1 Score: 168 bits (425), Expect = 7.890e-44
Identity = 97/255 (38.04%), Postives = 146/255 (57.25%), Query Frame = 1
Query:    1 ATEEEWEVLVDNGTWESEDPGRLPAGRKVSRTKWIFKRKLKEEGSVARYKARLVAQGFSQVE*R-FI*NQCPRSSHVDVTYFFSLAAEHDFELAGMDVDAAYLNAPVEEKLFVKLPPKFSPFSRDIPFVRRLRKSLYDLKQSGRNWNNFIEDFLVGIGLDHSTTDSCLYFSRDDGGETNLLMAVYIDDLVI-AGRREKVDEFKHNIRQCFRMKDLGSLSRVLGIEVRRDRPNGTITISQGSYVREVLKRYGFDQC 759
            A  EE+ +L    TWE +D   LP  RK    +W+F RK  E G + RYKARLVAQGFSQ+    F     P   H  +    ++AA  + E+  +DV  AYLN  + E++F++ P  F   +     V RL+K+LY LKQSGR WN  ++  L  +    S  D C+Y  R + G T+ +  V++DDL+I   + ++++E K  +++ F + DLG    ++G+EV+RDR   TI++ Q SYV  +LK+YG + C
Sbjct:  746 AINEEYSLLEGMETWELDD---LPPERKAIGCRWVFLRKYNENGEIIRYKARLVAQGFSQIPGMDFDGTFAPVMRHDSLRALLAIAAIKNLEIQQLDVKGAYLNGDLREEIFMRQPDGFHDGTSK---VCRLKKTLYGLKQSGREWNRKLDKVLTELRFSKSNVDHCVYI-RTENGHTSYI-TVWVDDLMIFTDKSDEMNEIKAYLKKEFEISDLGEPKLIIGLEVKRDRKKHTISLGQTSYVDRILKKYGMENC 992          
BLAST of mRNA_H-paniculata_contig11272.814.1 vs. uniprot
Match: A0A2G8RWY5_9APHY (Transcription factor n=1 Tax=Ganoderma sinense ZZ0214-1 TaxID=1077348 RepID=A0A2G8RWY5_9APHY)

HSP 1 Score: 167 bits (424), Expect = 1.110e-43
Identity = 96/232 (41.38%), Postives = 138/232 (59.48%), Query Frame = 1
Query:   70 PAGRKVSRTKWIFKRKLKEEGSVARYKARLVAQGFSQVE*RFI*NQ---CPRSSHVDVTYFFSLAAEHDFELAGMDVDAAYLNAPVEEKLFVKLPPKFSPFSRDIPFVRRLRKSLYDLKQSGRNWNNFIEDFLVGIGLDHSTTDSCLYFSRDDGGETNLLMAVYIDDLVIAGRREKVDEFKHNIRQCFRMKDLGSLSRVLGIEVRRDRPNGTITISQGSYVREVLKRYGFDQ 756
            P    +  +K +F+ K   EG+V+ +KARLVAQGFSQV  R   +     P S    +    SLAA HD+EL  MDV +AYLN  +EE ++++LPP F+P  +    V RL+K+LY LKQ+GR W   +   +  +G      D  +++ R+  GE+ +++A  +DDL I G  + VD F  +I+Q F M DLG L  +LGIEVRRDR   TI ISQ SY+  ++ R+  D+
Sbjct: 1066 PPDANIVGSKLVFRVKHDAEGAVSGFKARLVAQGFSQVPGRDYHDDETFAPVSRLPSIRTILSLAARHDWELRQMDVKSAYLNGILEETVYMRLPPGFAPPEQS-HLVCRLKKTLYGLKQAGRGWYKTLTAAMENMGFTRCVADHAVFYKRE--GESAIIVAASVDDLTITGTSDLVDAFAVDIKQRFEMSDLGDLHWILGIEVRRDRQARTIAISQRSYIDTIVSRFNLDE 1294          
BLAST of mRNA_H-paniculata_contig11272.814.1 vs. uniprot
Match: W7TCB8_9STRA (Gag-pol polyprotein n=3 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TCB8_9STRA)

HSP 1 Score: 162 bits (409), Expect = 1.950e-43
Identity = 96/247 (38.87%), Postives = 138/247 (55.87%), Query Frame = 1
Query:   28 VDNGTWESEDPGRLPAGRKVSRTKWIFKRKLKEEGSVARYKARLVAQGFSQ-VE*RFI*NQCPRSSHVDVTYFFSLAAEHDFELAGMDVDAAYLNAPVEEKLFVKLPPKFSPF-SRDIPFVRRLRKSLYDLKQSGRNWNNFIEDFLVGIGLDHSTTDSCLYFSRDDGGETNLLMAVYIDDLVIAGR-REKVDEFKHNIRQCFRMKDLGSLSRVLGIEVRRDRPNGTITISQGSYVREVLKRYGFDQC 759
            + NGTWE      LP G +   + W+   K  + G + R KAR +A+G+SQ     ++    P +S   +    +LA   D EL  MDV+ AYL + +EEK++VK PP +  + S     V RLRKSLY LKQSGRNW+  I+ +  G G   S+ D CLY      GE  L++ +Y+DDL+I    RE V +FKH I + F MKDL  L  +LG+ ++RDR    + ISQ +Y+  +L ++    C
Sbjct:    1 MKNGTWELTP---LPKGERCISSGWVETDKRDQNGVIVRRKARFIAKGYSQEFGYDYLHTYAPVASITTIRLVLALACILDLELDNMDVEPAYLQSDLEEKVYVKQPPGYEQYGSNGEELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHPSSADPCLYVKFGSSGEI-LVIVLYVDDLIITSNSREMVGKFKHAISREFSMKDLKELDWILGMAIKRDRGKRVMEISQTAYIDMMLAKFRMADC 243          
BLAST of mRNA_H-paniculata_contig11272.814.1 vs. uniprot
Match: W7T0T3_9STRA (Gag-pol polyprotein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T0T3_9STRA)

HSP 1 Score: 166 bits (419), Expect = 4.420e-43
Identity = 97/256 (37.89%), Postives = 144/256 (56.25%), Query Frame = 1
Query:    1 ATEEEWEVLVDNGTWESEDPGRLPAGRKVSRTKWIFKRKLKEEGSVARYKARLVAQGFSQ-VE*RFI*NQCPRSSHVDVTYFFSLAAEHDFELAGMDVDAAYLNAPVEEKLFVKLPPKFSPF-SRDIPFVRRLRKSLYDLKQSGRNWNNFIEDFLVGIGLDHSTTDSCLYFSRDDGGETNLLMAVYIDDLVIAGR-REKVDEFKHNIRQCFRMKDLGSLSRVLGIEVRRDRPNGTITISQGSYVREVLKRYGFDQC 759
            A + E++  + NGTWE      LP G +   + W+   K  + G + R KAR +A+G+SQ     ++    P +S   +    ++A   D EL  MDV+ AYL + +EEK++VK P  +  + S     V RLRKSLY LKQSGRNW+  I+ +  G G   S+ D CLY      GE  L++ +Y+DDL+I    RE V++FKH I + F MKDL  L  +LG+ ++RDR    + ISQ +Y+  +L ++G   C
Sbjct:  432 ARDAEYQAHMKNGTWELTP---LPKGERCISSGWVDSDKRDQNGVIVRRKARFIAKGYSQEFGYDYLYTYAPVASITTIRLILAIACILDLELDNMDVETAYLQSDLEEKVYVKQPIGYEQYGSNGEELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHPSSADPCLYVKFGSSGEI-LVIVLYVDDLIITSNSREMVNKFKHAISREFSMKDLKELDWILGMAIKRDREKRVMEISQTAYIDMMLAKFGMADC 683          
BLAST of mRNA_H-paniculata_contig11272.814.1 vs. uniprot
Match: W7TII5_9STRA (Gag-pol polyprotein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TII5_9STRA)

HSP 1 Score: 157 bits (397), Expect = 4.730e-43
Identity = 94/247 (38.06%), Postives = 139/247 (56.28%), Query Frame = 1
Query:   34 NGTWESEDPGRLPAGRKVSRTKWIFKRKLKEEGSVARYKARLVAQGFSQ-VE*RFI*NQCPRSSHVDVTYFFSLAAEHDFELAGMDVDAAYLNAPVEEKLFVKLPPKFS---PFSRDIPFVRRLRKSLYDLKQSGRNWNNFIEDFLVGIGLDHSTTDSCLYFSRDDGGETNLLMAVYIDDLVIAGR-REKVDEFKHNIRQCFRMKDLGSLSRVLGIEVRRDRPNGTITISQGSYVREVLKRYGFDQC 759
            NGTW+      LP G +   + W+   K  + G + R KAR +A+G+SQ     ++    P +S   +    ++A   D EL  MDVD AYL + +EEK++VK PP +    P   ++  V RLRKSLY LKQSGRNW+  I+ +  G G   S+ D CLY      GE  L++ +Y+DDL+IAG  R+ VD+FK  I +   MKDL  L  +LG+ ++R+R    + ISQ +Y+  +L ++    C
Sbjct:    3 NGTWKLTP---LPKGERCISSGWVETDKRDQNGIIVRRKARFIAKGYSQEYGYDYLNTYAPVASITTIRLILAIACILDLELDNMDVDTAYLQSDLEEKIYVKQPPGYEQCGPNGEEL--VCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHSSSADPCLYVKFGSSGEM-LVIVLYVDDLIIAGNSRDMVDDFKQAISKEISMKDLKELDWILGMAIKRNREKRFMEISQTAYIDMMLAKFKMADC 243          
BLAST of mRNA_H-paniculata_contig11272.814.1 vs. uniprot
Match: A0A7D9HG25_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9HG25_PARCT)

HSP 1 Score: 160 bits (405), Expect = 9.750e-43
Identity = 92/257 (35.80%), Postives = 152/257 (59.14%), Query Frame = 1
Query:   13 EWEVLVDNGTWESEDPGRLPAGRKVSRTKWIFKRKLKEEGS-VARYKARLVAQGFSQV-----E*RFI*NQCPRSSHVDVTYFFSLAAEHDFELAGMDVDAAYLNAPVEEKLFVKLPPKFSPFSRD-IPFVRRLRKSLYDLKQSGRNWNNFIEDFLVGIGLDHSTTDSCLYFSRDDGGETNLLMAVYIDDLVIAGRR-EKVDEFKHNIRQCFRMKDLGSLSRVLGIEVRRDRPNGTITISQGSYVREVLKRYGFDQC 759
            E E L +N T+E      LP G+ +   +W++   +KE+ + +   KAR VA+G+SQV     E  F     P ++   +T    LAA++D  +  MDV  A+L+AP++ ++F++ P  F   S + +  V RL+KSLY LKQSGRNWN  ++++L+  G   +  D C+Y  +   GE  +++ +++DDL+IA    +K+ +FK N++  FRMKDLG +S  LGI  ++   NG I ++Q  Y++++L R+G   C
Sbjct:  167 EMEALKENDTFELTT---LPEGKNLVGGRWVYT--IKEDANGLETLKARYVAKGYSQVHGIDYEETF----SPTANITSITILMQLAAQYDLTVHQMDVKTAFLHAPIDHEIFMEQPMGFEELSENGVKLVYRLKKSLYGLKQSGRNWNRVLDEYLISDGFVRNPVDHCVY--QKQTGEDIIIVVIWVDDLIIASSNTDKIRQFKENMKSKFRMKDLGEISYFLGISFKQG--NGVIKMNQKRYIQKILDRFGMSDC 410          
BLAST of mRNA_H-paniculata_contig11272.814.1 vs. uniprot
Match: A0A165UZ38_9AGAM (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Neolentinus lepideus HHB14362 ss-1 TaxID=1314782 RepID=A0A165UZ38_9AGAM)

HSP 1 Score: 157 bits (396), Expect = 1.110e-42
Identity = 92/258 (35.66%), Postives = 152/258 (58.91%), Query Frame = 1
Query:    1 ATEEEWEVLVDNGTWESEDPGRLPAGRKVSRTKWIFKRKLKEEGSVARYKARLVAQGFSQVE*RFI*NQ--CPRSSHVDVTYFFSLAAEHDFELAGMDVDAAYLNAPVEEKLFVKLPPKFSPFSRDIPFVRRLRKSLYDLKQSGRNWNNFIEDFLVG-IGLDHSTTDSCLY-FSRDDGGETNLLMAVYIDDLVIAGRREK-VDEFKHNIRQCFRMKDLGSLSRVLGIEVRRDRPNGTITISQGSYVREVLKRYGFDQC 759
            A ++E + LV+NGT+E  +    P GRK   ++W+FK K   +GS+ RYK RLVA+GFSQ    F  N+   P      +    +LAA  D EL  +D+  AYLN  +EE ++++ P  F    +   +V RL+K LY LKQ+GR+W+  + + L   +G    T +  ++ + +DD     +++ V++DD+ IA +    + + K ++RQ F+++DLG  S +LG+E++RDR + T+TISQ  Y+ ++L R+    C
Sbjct:   60 AAQDEIQSLVENGTFELVE---CPPGRKAIGSRWVFKVKRNADGSIERYKGRLVAKGFSQRP-GFDYNETFAPTPKWASLRAILALAALEDLELESVDISTAYLNGTLEEDVYMRQPKGFE--QKGPEWVWRLQKLLYGLKQAGRHWHEKLNEVLTEKLGFSRLTCEHSVWVYGKDD---VCIIIPVFVDDMTIASKSSAAIQKVKDDLRQHFKLRDLGPTSWLLGVEIKRDRSSRTLTISQRQYILDILSRFSMADC 308          
BLAST of mRNA_H-paniculata_contig11272.814.1 vs. uniprot
Match: A0A6D2JI50_9BRAS (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2JI50_9BRAS)

HSP 1 Score: 155 bits (392), Expect = 1.580e-42
Identity = 99/253 (39.13%), Postives = 143/253 (56.52%), Query Frame = 1
Query:    1 ATEEEWEVLVDNGTWESEDPGRLPAGRKVSRTKWIFKRKLKEEG-SVARYKARLVAQGFSQVE*RFI*NQC--PRSSHVDVTYFFSLAAEHDFELAGMDVDAAYLNAPVEEKLFVKLPPKFSPFSRDIPFVRRLRKSLYDLKQSGRNWNNFIEDFLVGIGLDHSTTDSCLYFSRDDGGETNLLMAVYIDDLVIA-GRREKVDEFKHNIRQCFRMKDLGSLSRVLGIEVRRDRPNGTITISQGSYVREVLKRYG 747
            A++EEW  L+ N TW+  D    P G +V  +KW++  K    G  + R+K RLVAQGFSQ E     N+   P   HV +    S     D+EL  MDV  A+L+  +EE++ +K P  F     D   V  LRKSLY LKQS R WN   + F+   G    + DSC+Y  R+   E  + + +Y+DD++IA G + +V   K  + Q F MKDLG  SR+LG+++ RDR  G +++SQ +Y+ +VLK +G
Sbjct:   22 ASKEEWSSLMKNHTWDLIDK---PDGARVVGSKWLYTIKSGIPGVELKRFKCRLVAQGFSQTE-GVDYNEIFSPVVKHVSIRIMLSAVVNRDYELEQMDVKTAFLHGDLEERILMKQPEGFIK-KGDENKVCLLRKSLYGLKQSPRQWNLKFDSFMKESGFIRRSYDSCVYM-RNLNKENAVYLLLYVDDMLIASGCKAEVRLVKDTLSQKFEMKDLGPASRILGMDIIRDRKKGILSLSQETYIEKVLKAFG 268          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11272.814.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
W7TJ26_9STRA1.930e-4438.76Gag-pol polyprotein n=2 Tax=Nannochloropsis gadita... [more]
A0A284QR88_ARMOS3.180e-4440.24Uncharacterized protein n=2 Tax=Armillaria TaxID=4... [more]
A0A067T5Q4_GALM37.890e-4438.04Integrase catalytic domain-containing protein (Fra... [more]
A0A2G8RWY5_9APHY1.110e-4341.38Transcription factor n=1 Tax=Ganoderma sinense ZZ0... [more]
W7TCB8_9STRA1.950e-4338.87Gag-pol polyprotein n=3 Tax=Nannochloropsis gadita... [more]
W7T0T3_9STRA4.420e-4337.89Gag-pol polyprotein n=2 Tax=Nannochloropsis gadita... [more]
W7TII5_9STRA4.730e-4338.06Gag-pol polyprotein n=1 Tax=Nannochloropsis gadita... [more]
A0A7D9HG25_PARCT9.750e-4335.80Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A165UZ38_9AGAM1.110e-4235.66Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6D2JI50_9BRAS1.580e-4239.13Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig11272contigH-paniculata_contig11272:3..761 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score115.5
Seed ortholog evalue2.2e-23
Seed eggNOG ortholog164328.Phyra87462
Hectar predicted targeting categoryother localisation
EggNOG free text desc.gag-polypeptide of LTR copia-type
EggNOG OGs3QHJF@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons1
Model size759
Cds size477
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928830.81375-UTR-H-paniculata_contig11272:2..2841622928830.81375-UTR-H-paniculata_contig11272:2..284Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11272 3..284 +
1691480637.770107-UTR-H-paniculata_contig11272:2..2841691480637.770107-UTR-H-paniculata_contig11272:2..284Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11272 3..284 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928830.832519-CDS-H-paniculata_contig11272:284..7611622928830.832519-CDS-H-paniculata_contig11272:284..761Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11272 285..761 +
1691480637.7793474-CDS-H-paniculata_contig11272:284..7611691480637.7793474-CDS-H-paniculata_contig11272:284..761Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11272 285..761 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig11272.814.1prot_H-paniculata_contig11272.814.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig11272 285..761 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig11272.814.1

>prot_H-paniculata_contig11272.814.1 ID=prot_H-paniculata_contig11272.814.1|Name=mRNA_H-paniculata_contig11272.814.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=159bp
MDVDAAYLNAPVEEKLFVKLPPKFSPFSRDIPFVRRLRKSLYDLKQSGRN
WNNFIEDFLVGIGLDHSTTDSCLYFSRDDGGETNLLMAVYIDDLVIAGRR
EKVDEFKHNIRQCFRMKDLGSLSRVLGIEVRRDRPNGTITISQGSYVREV
LKRYGFDQC
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mRNA from alignment at H-paniculata_contig11272:3..761+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig11272.814.1 ID=mRNA_H-paniculata_contig11272.814.1|Name=mRNA_H-paniculata_contig11272.814.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=759bp|location=Sequence derived from alignment at H-paniculata_contig11272:3..761+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCAACGGAGGAAGAATGGGAGGTGTTGGTGGACAATGGAACATGGGAAAG CGAAGACCCGGGGAGGTTACCGGCAGGGCGGAAGGTGAGTCGTACGAAAT GGATTTTCAAGCGGAAACTGAAGGAGGAAGGCAGCGTGGCACGCTACAAA GCGCGACTGGTGGCTCAAGGTTTTTCACAGGTGGAGTGAAGATTTATTTG AAACCAGTGCCCCCGTAGCTCGCATGTCGACGTTACGTACTTTTTTAGCC TGGCCGCCGAACACGATTTCGAATTAGCAGGCATGGACGTAGATGCGGCT TATTTGAACGCCCCGGTAGAAGAAAAGCTGTTTGTTAAGCTACCCCCCAA GTTTTCTCCTTTCTCCCGAGACATACCGTTTGTGCGCCGCCTGCGTAAAA GCCTGTACGACCTCAAGCAGAGCGGCCGAAACTGGAATAACTTTATTGAG GATTTTCTTGTTGGGATAGGACTCGACCATTCCACTACCGACTCATGCTT GTACTTTTCTCGCGACGATGGGGGAGAAACAAACCTTCTGATGGCCGTCT ATATTGACGACCTGGTCATTGCTGGCCGTCGTGAGAAAGTAGACGAGTTC AAGCATAACATAAGACAGTGTTTTAGGATGAAAGACTTGGGCTCTCTATC GCGCGTGTTGGGAATAGAAGTACGACGTGACCGCCCTAATGGTACGATAA CCATCTCGCAGGGTAGCTACGTCCGCGAGGTACTAAAAAGATACGGTTTT GACCAGTGT
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Coding sequence (CDS) from alignment at H-paniculata_contig11272:3..761+

>mRNA_H-paniculata_contig11272.814.1 ID=mRNA_H-paniculata_contig11272.814.1|Name=mRNA_H-paniculata_contig11272.814.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=954bp|location=Sequence derived from alignment at H-paniculata_contig11272:3..761+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGACGTAGATGCGGCTTATTTGAACGCCCCGGTAGAAGAAAAGCTGTT
TGTTAAGCTACCCCCCAAGTTTTCTCCTTTCTCCCGAGACATACCGTTTG
TGCGCCGCCTGCGTAAAAGCCTGTACGACCTCAAGCAGAGCGGCCGAAAC
TGGAATAACTTTATTGAGGATTTTCTTGTTGGGATAGGACTCGACCATTC
CACTACCGACTCATGCTTGTACTTTTCTCGCGACGATGGGGGAGAAACAA
ACCTTCTGATGGCCGTCTATATTGACGACCTGGTCATTGCTGGCCGTCGT
GAGAAAGTAGACGAGTTCAAGCATAACATAAGACAGTGTTTTAGGATGAA
AGACTTGGGCTCTCTATCGCGCGTGTTGGGAATAGAAGTACGACGTGACC
GCCCTAATGGTACGATAACCATCTCGCAGGGTAGCTACGTCCGCGAGGTA
CTAAAAAGATACGGTTTTGACCAGTGTATGGACGTAGATGCGGCTTATTT
GAACGCCCCGGTAGAAGAAAAGCTGTTTGTTAAGCTACCCCCCAAGTTTT
CTCCTTTCTCCCGAGACATACCGTTTGTGCGCCGCCTGCGTAAAAGCCTG
TACGACCTCAAGCAGAGCGGCCGAAACTGGAATAACTTTATTGAGGATTT
TCTTGTTGGGATAGGACTCGACCATTCCACTACCGACTCATGCTTGTACT
TTTCTCGCGACGATGGGGGAGAAACAAACCTTCTGATGGCCGTCTATATT
GACGACCTGGTCATTGCTGGCCGTCGTGAGAAAGTAGACGAGTTCAAGCA
TAACATAAGACAGTGTTTTAGGATGAAAGACTTGGGCTCTCTATCGCGCG
TGTTGGGAATAGAAGTACGACGTGACCGCCCTAATGGTACGATAACCATC
TCGCAGGGTAGCTACGTCCGCGAGGTACTAAAAAGATACGGTTTTGACCA
GTGT
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