prot_H-paniculata_contig29986.8136.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig29986.8136.1
Unique Nameprot_H-paniculata_contig29986.8136.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length81
Homology
BLAST of mRNA_H-paniculata_contig29986.8136.1 vs. uniprot
Match: A0A1X7TFD5_AMPQE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7TFD5_AMPQE)

HSP 1 Score: 58.9 bits (141), Expect = 1.470e-9
Identity = 28/51 (54.90%), Postives = 36/51 (70.59%), Query Frame = 0
Query:    2 QGLIDNGVWTQVERPKNKLVVSTMIIYKRKIGENGKVEKYKCHLVAHGNRQ 52
            + L +N VW  VE PK++ VV +  ++KRKIGENGKVE+YK  LVA G  Q
Sbjct:    6 ESLEENQVWDLVELPKDRRVVGSKWVFKRKIGENGKVERYKARLVAQGYSQ 56          
BLAST of mRNA_H-paniculata_contig29986.8136.1 vs. uniprot
Match: A0A2I0HGX5_PUNGR (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=2 Tax=Punica granatum TaxID=22663 RepID=A0A2I0HGX5_PUNGR)

HSP 1 Score: 57.4 bits (137), Expect = 3.080e-9
Identity = 25/59 (42.37%), Postives = 39/59 (66.10%), Query Frame = 0
Query:    6 DNGVWTQVERPKNKLVVSTMIIYKRKIGENGKVEKYKCHLVAHGNRQIKGIHFQEALSP 64
            +N VW  V+ P+  +++   +++KRKIG +GKVE YK  LVA G RQ + + ++E  SP
Sbjct:   10 ENQVWDLVDLPEGIVLIGNELVFKRKIGADGKVETYKARLVAKGYRQRQEVDYEETFSP 68          
BLAST of mRNA_H-paniculata_contig29986.8136.1 vs. uniprot
Match: UPI00092E9081 (uncharacterized protein LOC109363584 n=1 Tax=Lupinus angustifolius TaxID=3871 RepID=UPI00092E9081)

HSP 1 Score: 55.5 bits (132), Expect = 6.560e-8
Identity = 27/52 (51.92%), Postives = 34/52 (65.38%), Query Frame = 0
Query:    1 MQGLIDNGVWTQVERPKNKLVVSTMIIYKRKIGENGKVEKYKCHLVAHGNRQ 52
            M+ +  N VWT VE  K+   +  M +YK+KIGE+GKVE YK HLV  G RQ
Sbjct:   73 MESMKTNKVWTLVEASKDIKPIGCMWVYKKKIGEDGKVETYKAHLVDKGYRQ 124          
BLAST of mRNA_H-paniculata_contig29986.8136.1 vs. uniprot
Match: A0A2I0W3Q6_9ASPA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Dendrobium catenatum TaxID=906689 RepID=A0A2I0W3Q6_9ASPA)

HSP 1 Score: 57.8 bits (138), Expect = 6.930e-8
Identity = 28/75 (37.33%), Postives = 43/75 (57.33%), Query Frame = 0
Query:    4 LIDNGVWTQVERPKNKLVVSTMIIYKRKIGENGKVEKYKCHLVAHGNRQIKGIHFQEALSPAPAAVITKMMLSLA 78
            L   G W+ +  P NK+V+ +  I+K K   NG++++YK  LVA G +Q  GI+F E  SP       +++L LA
Sbjct:    8 LQQQGTWSLIPPPPNKIVIGSKWIFKLKTKPNGQIDRYKARLVAQGFKQEFGINFNETFSPVAKLPTIRILLLLA 82          
BLAST of mRNA_H-paniculata_contig29986.8136.1 vs. uniprot
Match: A0A6L2P5K6_TANCI (Integrase catalytic domain-containing protein n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A6L2P5K6_TANCI)

HSP 1 Score: 57.8 bits (138), Expect = 7.070e-8
Identity = 24/64 (37.50%), Postives = 39/64 (60.94%), Query Frame = 0
Query:    1 MQGLIDNGVWTQVERPKNKLVVSTMIIYKRKIGENGKVEKYKCHLVAHGNRQIKGIHFQEALSP 64
            ++ L +NG W  ++ P  K  +    IYKRK+  +G V++ K  LV  GNRQ+KG+ ++E  +P
Sbjct:  488 LRALEENGTWELIDLPSGKKAIRIHWIYKRKLKSDGYVDRKKARLVIQGNRQLKGVDYEETFAP 551          
BLAST of mRNA_H-paniculata_contig29986.8136.1 vs. uniprot
Match: A0A151T9B6_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151T9B6_CAJCA)

HSP 1 Score: 57.8 bits (138), Expect = 7.150e-8
Identity = 26/78 (33.33%), Postives = 42/78 (53.85%), Query Frame = 0
Query:    1 MQGLIDNGVWTQVERPKNKLVVSTMIIYKRKIGENGKVEKYKCHLVAHGNRQIKGIHFQEALSPAPAAVITKMMLSLA 78
            ++ +  NG W  ++RPK   VV    +YK K+ E GKV+K+K  LV  G  Q  GI + E  +P       +++++ A
Sbjct:  809 IEAIEKNGTWELIDRPKGAKVVGVKWVYKTKLNEKGKVDKFKARLVVKGYAQQYGIDYTEVFAPVACMETVRLVIAYA 886          
BLAST of mRNA_H-paniculata_contig29986.8136.1 vs. uniprot
Match: A0A2K3N6U7_TRIPR (Retrotransposon-related protein n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3N6U7_TRIPR)

HSP 1 Score: 56.6 bits (135), Expect = 1.760e-7
Identity = 28/78 (35.90%), Postives = 40/78 (51.28%), Query Frame = 0
Query:    1 MQGLIDNGVWTQVERPKNKLVVSTMIIYKRKIGENGKVEKYKCHLVAHGNRQIKGIHFQEALSPAPAAVITKMMLSLA 78
            ++ +  N  W   E P     +    IYK K+ E GKVEKYK  L+A G  Q  GI+F+E  +P       + +LS+A
Sbjct:   36 IESIESNDTWELTELPSGSKKIGVKWIYKTKLNEKGKVEKYKARLIAKGYSQQYGIYFKEVFAPVARRDTIRTVLSIA 113          
BLAST of mRNA_H-paniculata_contig29986.8136.1 vs. uniprot
Match: A0A6L2L857_TANCI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A6L2L857_TANCI)

HSP 1 Score: 56.6 bits (135), Expect = 1.820e-7
Identity = 26/78 (33.33%), Postives = 42/78 (53.85%), Query Frame = 0
Query:    1 MQGLIDNGVWTQVERPKNKLVVSTMIIYKRKIGENGKVEKYKCHLVAHGNRQIKGIHFQEALSPAPAAVITKMMLSLA 78
            ++ L +N  W   + P NK  +    IYK K+  +G VE+ K  LV  GNRQ+KG+ + E  +P    +    +L++A
Sbjct:  441 LRALEENETWELADLPPNKKAIGNHWIYKTKLKSDGSVERKKSKLVVQGNRQMKGVDYDETFAPVAKMMTVMSLLAVA 518          
BLAST of mRNA_H-paniculata_contig29986.8136.1 vs. uniprot
Match: A0A6A4ZHD7_9STRA (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4ZHD7_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 3.440e-7
Identity = 27/80 (33.75%), Postives = 43/80 (53.75%), Query Frame = 0
Query:    1 MQGLIDNGVWTQVERPKNKLVVSTMIIYKRKIGENGKVEKYKCHLVAHGNRQIKGIHFQEALSPAPAAVITKMMLSLAVI 80
            + G++ NG W  VERPK+  +VS   ++K K  + G V+K+K  LVA G  Q  G+ +    +P       +++  LA I
Sbjct:  899 LDGIVGNGTWEVVERPKHTNIVSHKWVFKVKYDQGGNVDKFKARLVARGFSQRYGVDYSNTYAPVIKQASVRLIYVLAAI 978          
BLAST of mRNA_H-paniculata_contig29986.8136.1 vs. uniprot
Match: A0A2I0X5Q4_9ASPA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Dendrobium catenatum TaxID=906689 RepID=A0A2I0X5Q4_9ASPA)

HSP 1 Score: 54.7 bits (130), Expect = 8.450e-7
Identity = 27/75 (36.00%), Postives = 43/75 (57.33%), Query Frame = 0
Query:    4 LIDNGVWTQVERPKNKLVVSTMIIYKRKIGENGKVEKYKCHLVAHGNRQIKGIHFQEALSPAPAAVITKMMLSLA 78
            L   G W+ V  P NK+V+ +  I+K K   +G++++YK  LVA G +Q  G++F E  SP       +++L LA
Sbjct:    8 LQQQGTWSLVPPPPNKIVLGSKWIFKLKTTPDGQIDRYKARLVAQGFKQEFGLNFNETFSPVAKLPTIRILLLLA 82          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig29986.8136.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1X7TFD5_AMPQE1.470e-954.90Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2I0HGX5_PUNGR3.080e-942.37Reverse transcriptase Ty1/copia-type domain-contai... [more]
UPI00092E90816.560e-851.92uncharacterized protein LOC109363584 n=1 Tax=Lupin... [more]
A0A2I0W3Q6_9ASPA6.930e-837.33Retrovirus-related Pol polyprotein from transposon... [more]
A0A6L2P5K6_TANCI7.070e-837.50Integrase catalytic domain-containing protein n=1 ... [more]
A0A151T9B6_CAJCA7.150e-833.33Retrovirus-related Pol polyprotein from transposon... [more]
A0A2K3N6U7_TRIPR1.760e-735.90Retrotransposon-related protein n=1 Tax=Trifolium ... [more]
A0A6L2L857_TANCI1.820e-733.33Retrovirus-related Pol polyprotein from transposon... [more]
A0A6A4ZHD7_9STRA3.440e-733.75Integrase catalytic domain-containing protein (Fra... [more]
A0A2I0X5Q4_9ASPA8.450e-736.00Retrovirus-related Pol polyprotein from transposon... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 9..79
e-value: 8.0E-11
score: 42.0

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig29986contigH-paniculata_contig29986:238..480 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig29986.8136.1mRNA_H-paniculata_contig29986.8136.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig29986 52..489 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig29986.8136.1 ID=prot_H-paniculata_contig29986.8136.1|Name=mRNA_H-paniculata_contig29986.8136.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=81bp
MQGLIDNGVWTQVERPKNKLVVSTMIIYKRKIGENGKVEKYKCHLVAHGN
RQIKGIHFQEALSPAPAAVITKMMLSLAVI*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2