mRNA_H-paniculata_contig29986.8136.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig29986.8136.1 vs. uniprot
Match: A0A2N5VDA8_9BASI (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Puccinia coronata f. sp. avenae TaxID=200324 RepID=A0A2N5VDA8_9BASI) HSP 1 Score: 97.1 bits (240), Expect = 3.830e-21 Identity = 46/141 (32.62%), Postives = 77/141 (54.61%), Query Frame = 1
Query: 7 EMQGLIDNGVWTQVERPKNKLVVSTMIIYKRKIGENGKVEKYKCHLVAHGNRQIKGIHFQEALSPAPAAVITKMMLSLAVI*DW*LWHVDFEQAYLQAPIDQDIFVEIPVKYREFPGAVGRLDKAIYVLVQAGRCWSMNVS 429
E++ L + GVW P N ++ ++ +K G++++YK VA G QIKG HF + +P + +++L++ +W + DF AYL +PID++++V P PG +L KA+Y QAGRCW ++S
Sbjct: 103 ELRNLQELGVWEVELVPDNTRILGAQWVFAKKFNSKGEIQRYKARHVAKGYSQIKGKHFDKTFAPTATFISMRLILTIVACFNWPVHSFDFVAAYLNSPIDEEVWVTAPKGLDVLPGHACQLKKALYGTKQAGRCWWQHLS 243
BLAST of mRNA_H-paniculata_contig29986.8136.1 vs. uniprot
Match: A0A5N6LS40_9ASTR (Uncharacterized protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6LS40_9ASTR) HSP 1 Score: 98.6 bits (244), Expect = 3.840e-21 Identity = 49/140 (35.00%), Postives = 79/140 (56.43%), Query Frame = 1
Query: 7 EMQGLIDNGVWTQVERPKNKLVVSTMIIYKRKIGENGKVEKYKCHLVAHGNRQIKGIHFQEALSPAPAAVITKMMLSLAVI*DW*LWHVDFEQAYLQAPIDQDIFVEIPVKYRE--FPGAVGRLDKAIYVLVQAGRCWSM 420
EMQ + DN VW VE P V + I+KRK +G V YK LVA G Q +G+ + E SP +++L++A D+ +W +D + A+L + +D+++ P + + +P V +L+K+IY L QA RCW++
Sbjct: 768 EMQSMCDNQVWDLVELPPGSRAVGSKWIFKRKTDMHGNVHTYKARLVAKGFTQTQGVDYDETFSPVAMIKSIRILLAIAAYYDYEIWQMDVKTAFLNGHLSEDVYMVQPDGFIDPKYPSKVYKLNKSIYGLKQASRCWNL 907
BLAST of mRNA_H-paniculata_contig29986.8136.1 vs. uniprot
Match: A0A6S7HNY1_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7HNY1_PARCT) HSP 1 Score: 98.6 bits (244), Expect = 3.910e-21 Identity = 54/146 (36.99%), Postives = 84/146 (57.53%), Query Frame = 1
Query: 7 EMQGLIDNGVWTQVERPKNKLVVSTMIIYKRKIGENGKVEKYKCHLVAHGNRQIKGIHFQEALSPAPAAVITKMMLSLAVI*DW*LWHVDFEQAYLQAPIDQDIFVEIPVKY--REFPGAVGRLDKAIYVLVQAGRCWSMNVSTDL 438
E + L+ N W V PK K +V + ++K K +G VE++K LVA G Q +GI +QE SP + +L++A I DW + +D + A+LQ +D+ IF++ P Y +E P V +L+++IY L QA RCW+ + T L
Sbjct: 836 EYESLMKNDTWELVPPPKGKNIVGSRWVFKVKHTADGSVERFKARLVAQGYSQSQGIDYQEIFSPVVRYTSIRSLLAVANICDWEISQMDVKTAFLQGELDEVIFMKQPEGYVDQERPDHVCKLNRSIYGLKQAARCWNSAIDTFL 981
BLAST of mRNA_H-paniculata_contig29986.8136.1 vs. uniprot
Match: A0A5N6LW24_9ASTR (Integrase catalytic domain-containing protein n=2 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6LW24_9ASTR) HSP 1 Score: 98.2 bits (243), Expect = 5.200e-21 Identity = 49/140 (35.00%), Postives = 79/140 (56.43%), Query Frame = 1
Query: 7 EMQGLIDNGVWTQVERPKNKLVVSTMIIYKRKIGENGKVEKYKCHLVAHGNRQIKGIHFQEALSPAPAAVITKMMLSLAVI*DW*LWHVDFEQAYLQAPIDQDIFVEIPVKYRE--FPGAVGRLDKAIYVLVQAGRCWSM 420
EMQ + DN VW VE P V + I+KRK +G V YK LVA G Q +G+ + E SP +++L++A D+ +W +D + A+L + +D+++ P + + +P V +L+K+IY L QA RCW++
Sbjct: 488 EMQSMRDNQVWDLVELPPGSRAVGSKWIFKRKTDMHGNVHTYKARLVAKGFTQTQGVDYDETFSPVAMIKSIRILLAIAAYYDYEIWQMDVKTAFLNGHLSEDVYMVQPEGFVDPKYPNKVCKLNKSIYGLKQASRCWNL 627
BLAST of mRNA_H-paniculata_contig29986.8136.1 vs. uniprot
Match: A0A5N6MMD4_9ASTR (Uncharacterized protein n=6 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6MMD4_9ASTR) HSP 1 Score: 97.8 bits (242), Expect = 7.260e-21 Identity = 49/140 (35.00%), Postives = 79/140 (56.43%), Query Frame = 1
Query: 7 EMQGLIDNGVWTQVERPKNKLVVSTMIIYKRKIGENGKVEKYKCHLVAHGNRQIKGIHFQEALSPAPAAVITKMMLSLAVI*DW*LWHVDFEQAYLQAPIDQDIFVEIPVKYRE--FPGAVGRLDKAIYVLVQAGRCWSM 420
EMQ + DN VW VE P V + I+KRK +G V YK LVA G Q +G+ + E SP +++L++A D+ +W +D + A+L + +D+++ P + + +P V +L+K+IY L QA RCW++
Sbjct: 821 EMQSMRDNQVWDLVELPPGSRAVGSKWIFKRKTDMHGNVHTYKARLVAKGFTQTQGVDYDETFSPVAMIKSIRVLLAIAAYYDYEIWQMDVKTAFLNGHLSEDVYMVQPDGFIDPKYPSKVCKLNKSIYGLKQASRCWNL 960
BLAST of mRNA_H-paniculata_contig29986.8136.1 vs. uniprot
Match: A0A8J6LFP5_TENMO (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Tenebrio molitor TaxID=7067 RepID=A0A8J6LFP5_TENMO) HSP 1 Score: 97.4 bits (241), Expect = 8.930e-21 Identity = 52/144 (36.11%), Postives = 81/144 (56.25%), Query Frame = 1
Query: 7 EMQGLIDNGVWTQVERPKNKLVVSTMIIYKRKIGENGKVEKYKCHLVAHGNRQIKGIHFQEALSPAPAAVITKMMLSLAVI*DW*LWHVDFEQAYLQAPIDQDIFVEIPVKYREFPGAVGRLDKAIYVLVQAGRCWSMNVSTDL 438
E+Q L N WT VE PKN+ + +YK K E+G V+KYK LVA G RQ+ G+ + E SP +M+L +AV L D + A+L ID+ ++++ P Y++ V +L++++Y L QA RCW+ ++ L
Sbjct: 155 EIQSLKQNQTWTLVEPPKNQQFIDNRWVYKIKRNEDGSVQKYKARLVARGFRQVAGVDYNETFSPVTKFDSIRMILCVAVSEKLILRQFDVKTAFLYGNIDEILYMQQPDGYQDGTKRVCKLNRSLYGLKQASRCWNQRFTSVL 298
BLAST of mRNA_H-paniculata_contig29986.8136.1 vs. uniprot
Match: UPI00053F92D1 (uncharacterized protein LOC104884908 n=1 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=UPI00053F92D1) HSP 1 Score: 95.9 bits (237), Expect = 3.370e-20 Identity = 47/145 (32.41%), Postives = 78/145 (53.79%), Query Frame = 1
Query: 7 EMQGLIDNGVWTQVERPKNKLVVSTMIIYKRKIGENGKVEKYKCHLVAHGNRQIKGIHFQEALSPAPAAVITKMMLSLAVI*DW*LWHVDFEQAYLQAPIDQDIFVEIPVKYREFP-GAVGRLDKAIYVLVQAGRCWSMNVSTDL 438
E+ L N W P K + +Y+ K +G +E+YK HLV GNRQ++G+ + E L+P V + L++A +W L +D A+L +D++++++ P ++ G V RL K++Y L QA RCW ++T L
Sbjct: 893 EIDALEANATWVLTPLPPGKHALGCKWVYRIKYHVDGSIERYKAHLVIFGNRQVEGVDYNETLTPVAKMVTVRAFLAIAAAKNWELHQMDVHNAFLHGDLDEELYMKPPPGFQHTTSGLVCRLQKSLYGLRQAPRCWFAKLATSL 1037
BLAST of mRNA_H-paniculata_contig29986.8136.1 vs. uniprot
Match: A0A5N6L9X5_9ASTR (Uncharacterized protein n=2 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6L9X5_9ASTR) HSP 1 Score: 95.1 bits (235), Expect = 6.090e-20 Identity = 48/140 (34.29%), Postives = 78/140 (55.71%), Query Frame = 1
Query: 7 EMQGLIDNGVWTQVERPKNKLVVSTMIIYKRKIGENGKVEKYKCHLVAHGNRQIKGIHFQEALSPAPAAVITKMMLSLAVI*DW*LWHVDFEQAYLQAPIDQDIFVEIPVKYRE--FPGAVGRLDKAIYVLVQAGRCWSM 420
EMQ + DN VW VE P + I+KRK +G V YK LVA G Q +G+ + E SP +++L++A D+ +W +D + A+L + +D+++ P + + +P V +L+K+IY L QA RCW++
Sbjct: 624 EMQSMRDNQVWDLVELPPGSRAGGSKWIFKRKTDMHGNVHTYKAQLVAKGFTQTQGVDYDETFSPVAMIKSIRILLAIAAYYDYEIWQMDVKTAFLNGHLSEDVYMVQPDGFIDPKYPSKVCKLNKSIYGLKQASRCWNL 763
BLAST of mRNA_H-paniculata_contig29986.8136.1 vs. uniprot
Match: A0A8J6LHG9_TENMO (Uncharacterized protein n=1 Tax=Tenebrio molitor TaxID=7067 RepID=A0A8J6LHG9_TENMO) HSP 1 Score: 94.7 bits (234), Expect = 8.860e-20 Identity = 51/144 (35.42%), Postives = 80/144 (55.56%), Query Frame = 1
Query: 7 EMQGLIDNGVWTQVERPKNKLVVSTMIIYKRKIGENGKVEKYKCHLVAHGNRQIKGIHFQEALSPAPAAVITKMMLSLAVI*DW*LWHVDFEQAYLQAPIDQDIFVEIPVKYREFPGAVGRLDKAIYVLVQAGRCWSMNVSTDL 438
E+Q L N WT VE PKN+ V+ +Y K E+G V+KYK LVA G RQ+ G+ + E SP +M+L +A L D + A+L ID+ ++++ P Y++ V +L++++Y L QA RCW+ ++ L
Sbjct: 220 EIQSLKQNQTWTLVEPPKNQQVIDNRWVYIIKRNEDGSVQKYKARLVARGFRQVAGVDYNETFSPVTKFDSIRMILCVAASEKLILRQFDVKTAFLYGNIDEILYMQQPDGYQDGTKRVCKLNRSLYGLKQASRCWNQRFTSVL 363
BLAST of mRNA_H-paniculata_contig29986.8136.1 vs. uniprot
Match: A0A6A4ZHD7_9STRA (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4ZHD7_9STRA) HSP 1 Score: 93.6 bits (231), Expect = 2.190e-19 Identity = 50/137 (36.50%), Postives = 75/137 (54.74%), Query Frame = 1
Query: 7 EMQGLIDNGVWTQVERPKNKLVVSTMIIYKRKIGENGKVEKYKCHLVAHGNRQIKGIHFQEALSPAPAAVITKMMLSLAVI*DW*LWHVDFEQAYLQAPIDQDIFVEIPVKYR-EFPGAVGRLDKAIYVLVQAGRCW 414
E+ G++ NG W VERPK+ +VS ++K K + G V+K+K LVA G Q G+ + +P +++ LA I + H+DF QAYL A D DI++E+P + + VG L K +Y L Q+G W
Sbjct: 898 ELDGIVGNGTWEVVERPKHTNIVSHKWVFKVKYDQGGNVDKFKARLVARGFSQRYGVDYSNTYAPVIKQASVRLIYVLAAIFKCEITHLDFPQAYLNAKTDFDIYIELPEGFDVDTKKYVGLLRKGLYGLKQSGMLW 1034 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig29986.8136.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig29986.8136.1 >prot_H-paniculata_contig29986.8136.1 ID=prot_H-paniculata_contig29986.8136.1|Name=mRNA_H-paniculata_contig29986.8136.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=81bp MQGLIDNGVWTQVERPKNKLVVSTMIIYKRKIGENGKVEKYKCHLVAHGNback to top mRNA from alignment at H-paniculata_contig29986:52..489- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig29986.8136.1 ID=mRNA_H-paniculata_contig29986.8136.1|Name=mRNA_H-paniculata_contig29986.8136.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=438bp|location=Sequence derived from alignment at H-paniculata_contig29986:52..489- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig29986:52..489- >mRNA_H-paniculata_contig29986.8136.1 ID=mRNA_H-paniculata_contig29986.8136.1|Name=mRNA_H-paniculata_contig29986.8136.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=486bp|location=Sequence derived from alignment at H-paniculata_contig29986:52..489- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |